Difference between revisions of "NONHSAT005924"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGTACATTTCAAGTTGGTCGCGGCTTGGGCTCCGCTTTGGGGAGGGGCAGCAGGTTTATTCACTGGATCTCTGAATACCCAGGCCCCCTCCACCATGGCCAGCCGGGGTGGGGGCCGGGGTCGTGGCCGGGGCCAGTTGACCTTCAACGTGGAGGCCGTGGGCATTGGGAAAGGGGATGCTTTGCCCCCACCCACCCTGCAGCCTTCTCCACTCTTCCCTATTGGCGGCGTCTACCCCGGGAGCTAAAGATCCGAGTGCGGAAGCTACAGAAGGAACGGATTACAATTCTGCTCCCCAAGAGGCCCCCTAAGACCACAGAAGATAAGGAGGAAACAATACAGAAACTAGAGGTGAGGAGGAAGTGTGCATAGAGACCTCCTGAGCCCTGGATCCATTCCCTCTCTCTTGGCCCATGTGTGCCTCAATTTTTCCCTTCTGTGAACTGAACCTGAGTTTCTATTCCTATTCATCCCCACATGAGACCCTGGAGAAGAAGGAAGAAGAAGTAACTTCagaggaggatgaggagaaagaagaagaagaagagaaggaagaggaggaagaagaagagtatgatgaagaagaacatgaagaGGAAACTGATTACATCATGTCATATTTTGACAATGGAGAGGACTTTGGTGGTGACAGTGATGACAATATGGACGAGGCTATATACTGAAGAAGGACTCTGGACCCTCGTGTCTTTCTTTAGGATACAGAGAGTAACTGTACCTATTATTTGTTTCTTCAG</dnaseq>| | sequence = <dnaseq>AGTACATTTCAAGTTGGTCGCGGCTTGGGCTCCGCTTTGGGGAGGGGCAGCAGGTTTATTCACTGGATCTCTGAATACCCAGGCCCCCTCCACCATGGCCAGCCGGGGTGGGGGCCGGGGTCGTGGCCGGGGCCAGTTGACCTTCAACGTGGAGGCCGTGGGCATTGGGAAAGGGGATGCTTTGCCCCCACCCACCCTGCAGCCTTCTCCACTCTTCCCTATTGGCGGCGTCTACCCCGGGAGCTAAAGATCCGAGTGCGGAAGCTACAGAAGGAACGGATTACAATTCTGCTCCCCAAGAGGCCCCCTAAGACCACAGAAGATAAGGAGGAAACAATACAGAAACTAGAGGTGAGGAGGAAGTGTGCATAGAGACCTCCTGAGCCCTGGATCCATTCCCTCTCTCTTGGCCCATGTGTGCCTCAATTTTTCCCTTCTGTGAACTGAACCTGAGTTTCTATTCCTATTCATCCCCACATGAGACCCTGGAGAAGAAGGAAGAAGAAGTAACTTCagaggaggatgaggagaaagaagaagaagaagagaaggaagaggaggaagaagaagagtatgatgaagaagaacatgaagaGGAAACTGATTACATCATGTCATATTTTGACAATGGAGAGGACTTTGGTGGTGACAGTGATGACAATATGGACGAGGCTATATACTGAAGAAGGACTCTGGACCCTCGTGTCTTTCTTTAGGATACAGAGAGTAACTGTACCTATTATTTGTTTCTTCAG</dnaseq>| | ||
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| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG002700]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 19:38, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT005924 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
755 nt |
| Genomic location |
chr1-:145456565..145470374 |
| Exon number |
5 |
| Exons |
145456565..145456723,145456991..145457309,145457548..145457604,145460097..145460263,145470322..145470374 |
| Genome context |
|
| Sequence |
000001 AGTACATTTC AAGTTGGTCG CGGCTTGGGC TCCGCTTTGG GGAGGGGCAG CAGGTTTATT CACTGGATCT CTGAATACCC 000080
000081 AGGCCCCCTC CACCATGGCC AGCCGGGGTG GGGGCCGGGG TCGTGGCCGG GGCCAGTTGA CCTTCAACGT GGAGGCCGTG 000160 000161 GGCATTGGGA AAGGGGATGC TTTGCCCCCA CCCACCCTGC AGCCTTCTCC ACTCTTCCCT ATTGGCGGCG TCTACCCCGG 000240 000241 GAGCTAAAGA TCCGAGTGCG GAAGCTACAG AAGGAACGGA TTACAATTCT GCTCCCCAAG AGGCCCCCTA AGACCACAGA 000320 000321 AGATAAGGAG GAAACAATAC AGAAACTAGA GGTGAGGAGG AAGTGTGCAT AGAGACCTCC TGAGCCCTGG ATCCATTCCC 000400 000401 TCTCTCTTGG CCCATGTGTG CCTCAATTTT TCCCTTCTGT GAACTGAACC TGAGTTTCTA TTCCTATTCA TCCCCACATG 000480 000481 AGACCCTGGA GAAGAAGGAA GAAGAAGTAA CTTCagagga ggatgaggag aaagaagaag aagaagagaa ggaagaggag 000560 000561 gaagaagaag agtatgatga agaagaacat gaagaGGAAA CTGATTACAT CATGTCATAT TTTGACAATG GAGAGGACTT 000640 000641 TGGTGGTGAC AGTGATGACA ATATGGACGA GGCTATATAC TGAAGAAGGA CTCTGGACCC TCGTGTCTTT CTTTAGGATA 000720 000721 CAGAGAGTAA CTGTACCTAT TATTTGTTTC TTCAG |
Predicted Small Protein
| Name | NONHSAT005924_smProtein_413:682 |
| Length | 90 |
| Molecular weight | 10656.8263 |
| Aromaticity | 0.123595505618 |
| Instability index | 104.755168539 |
| Isoelectric point | 3.63177490234 |
| Runs | 13 |
| Runs residual | 0.00286406697511 |
| Runs probability | 0.0316742081448 |
| Amino acid sequence | MCASIFPFCELNLSFYSYSSPHETLEKKEEEVTSEEDEEKEEEEEKEEEEEEEYDEEEHE EETDYIMSYFDNGEDFGGDSDDNMDEAIY |
| Secondary structure | LEEEEEEEEEELLEEEELLLLLHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHLLHHHHH HHHHHHHHHLLLLLLLLLLLLHHHHHHLL |
| PRMN | - |
| PiMo | - |
