Difference between revisions of "NONHSAT006824"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGCTGAGTCCTGAGCAGCAGCCCAGCGCAGCCACCGAGACACCATGAGAGCCCTCACACTCCTCGCCCTATTGGCCCTGGCCGCACTTTGCATCGCTGGCCAGGCAGGTGAGTGCCCCCACCTCCCCTCAGGCCGCATTGCAGTGGGGGCTGAGAGGAGGAAGCACCATGGCCCACCTCTTCTCACCCCTTTGGCTGGCAGTCCCTTTGCAGTCTAACCACCTTGTTGCAGGCTCAATCCATTTGCCCCAGCTCTGCCCTTGCAGAGGGAGAGGAGGGAAGAGCAAGCTGCCCGAGACGCAGGGGAAGGAGGATGAGGGCCCTGGGGATGAGCTGGGGTGAACCAGGCTCCCTTTCCTTTGCAGGTGCGAAGCCCAGCGGTGCAGAGTCCAGCAAAGGTGCAGCCTTTGTGTCCAAGCAGGAGGGCAGCGAGGTAGTGAAGAGACCCAGGCGCTACCTGTATCAATGGCTGGGGTGAGAGAAAAGGCAGAGCTGGGCCAAGGCCCTGCCTCTCCGGGATGGTCTGTGGGGGAGCTGCAGCAGGGAGTGGCCTCTCTGGGTTGTGGTGGGGGTACAGGCAGCCTGCCCTGGTGGGCACCCTGGAGCCCCATGTGTAGGGAGAGGAGGGATGGGCATTTTGCACGGGGGCTGATGCCACCACGTCGGGTGTCTCAGAGCCCCAGTCCCCTACCCGGATCCCCTGGAGCCCAGGAGGGAGGTGTGTGAGCTCAATCCGGACTGTGACGAGTTGGCTGACCACATCGGCTTTCAGGAGGCCTATCGGCGCTTCTACGGCCCGGTCTAGGGTGTCGCTCTGCTGGCCTGGCCGGCAACCCCAGTTCTGCTCCTCTCCAGGCACCCTTCTTTCCTCTTCCCCTTGCCCTTGCCCTGACCTCCCAGCCCTATGGATGTGGGGTCCCCATCATCCCAGC</dnaseq>| | sequence = <dnaseq>AGCTGAGTCCTGAGCAGCAGCCCAGCGCAGCCACCGAGACACCATGAGAGCCCTCACACTCCTCGCCCTATTGGCCCTGGCCGCACTTTGCATCGCTGGCCAGGCAGGTGAGTGCCCCCACCTCCCCTCAGGCCGCATTGCAGTGGGGGCTGAGAGGAGGAAGCACCATGGCCCACCTCTTCTCACCCCTTTGGCTGGCAGTCCCTTTGCAGTCTAACCACCTTGTTGCAGGCTCAATCCATTTGCCCCAGCTCTGCCCTTGCAGAGGGAGAGGAGGGAAGAGCAAGCTGCCCGAGACGCAGGGGAAGGAGGATGAGGGCCCTGGGGATGAGCTGGGGTGAACCAGGCTCCCTTTCCTTTGCAGGTGCGAAGCCCAGCGGTGCAGAGTCCAGCAAAGGTGCAGCCTTTGTGTCCAAGCAGGAGGGCAGCGAGGTAGTGAAGAGACCCAGGCGCTACCTGTATCAATGGCTGGGGTGAGAGAAAAGGCAGAGCTGGGCCAAGGCCCTGCCTCTCCGGGATGGTCTGTGGGGGAGCTGCAGCAGGGAGTGGCCTCTCTGGGTTGTGGTGGGGGTACAGGCAGCCTGCCCTGGTGGGCACCCTGGAGCCCCATGTGTAGGGAGAGGAGGGATGGGCATTTTGCACGGGGGCTGATGCCACCACGTCGGGTGTCTCAGAGCCCCAGTCCCCTACCCGGATCCCCTGGAGCCCAGGAGGGAGGTGTGTGAGCTCAATCCGGACTGTGACGAGTTGGCTGACCACATCGGCTTTCAGGAGGCCTATCGGCGCTTCTACGGCCCGGTCTAGGGTGTCGCTCTGCTGGCCTGGCCGGCAACCCCAGTTCTGCTCCTCTCCAGGCACCCTTCTTTCCTCTTCCCCTTGCCCTTGCCCTGACCTCCCAGCCCTATGGATGTGGGGTCCCCATCATCCCAGC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG003111]][[Category:Transcripts]] |
Latest revision as of 19:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT006824 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
931 nt |
| Genomic location |
chr1+:156211980..156213080 |
| Exon number |
2 |
| Exons |
156211980..156212382,156212553..156213080 |
| Genome context |
|
| Sequence |
000001 AGCTGAGTCC TGAGCAGCAG CCCAGCGCAG CCACCGAGAC ACCATGAGAG CCCTCACACT CCTCGCCCTA TTGGCCCTGG 000080
000081 CCGCACTTTG CATCGCTGGC CAGGCAGGTG AGTGCCCCCA CCTCCCCTCA GGCCGCATTG CAGTGGGGGC TGAGAGGAGG 000160 000161 AAGCACCATG GCCCACCTCT TCTCACCCCT TTGGCTGGCA GTCCCTTTGC AGTCTAACCA CCTTGTTGCA GGCTCAATCC 000240 000241 ATTTGCCCCA GCTCTGCCCT TGCAGAGGGA GAGGAGGGAA GAGCAAGCTG CCCGAGACGC AGGGGAAGGA GGATGAGGGC 000320 000321 CCTGGGGATG AGCTGGGGTG AACCAGGCTC CCTTTCCTTT GCAGGTGCGA AGCCCAGCGG TGCAGAGTCC AGCAAAGGTG 000400 000401 CAGCCTTTGT GTCCAAGCAG GAGGGCAGCG AGGTAGTGAA GAGACCCAGG CGCTACCTGT ATCAATGGCT GGGGTGAGAG 000480 000481 AAAAGGCAGA GCTGGGCCAA GGCCCTGCCT CTCCGGGATG GTCTGTGGGG GAGCTGCAGC AGGGAGTGGC CTCTCTGGGT 000560 000561 TGTGGTGGGG GTACAGGCAG CCTGCCCTGG TGGGCACCCT GGAGCCCCAT GTGTAGGGAG AGGAGGGATG GGCATTTTGC 000640 000641 ACGGGGGCTG ATGCCACCAC GTCGGGTGTC TCAGAGCCCC AGTCCCCTAC CCGGATCCCC TGGAGCCCAG GAGGGAGGTG 000720 000721 TGTGAGCTCA ATCCGGACTG TGACGAGTTG GCTGACCACA TCGGCTTTCA GGAGGCCTAT CGGCGCTTCT ACGGCCCGGT 000800 000801 CTAGGGTGTC GCTCTGCTGG CCTGGCCGGC AACCCCAGTT CTGCTCCTCT CCAGGCACCC TTCTTTCCTC TTCCCCTTGC 000880 000881 CCTTGCCCTG ACCTCCCAGC CCTATGGATG TGGGGTCCCC ATCATCCCAG C |
Predicted Small Protein
| Name | NONHSAT006824_smProtein_464:724 |
| Length | 87 |
| Molecular weight | 8864.9022 |
| Aromaticity | 0.0581395348837 |
| Instability index | 78.9011627907 |
| Isoelectric point | 8.93658447266 |
| Runs | 11 |
| Runs residual | 0.0117146824019 |
| Runs probability | 0.0460968990381 |
| Amino acid sequence | MAGVREKAELGQGPASPGWSVGELQQGVASLGCGGGTGSLPWWAPWSPMCRERRDGHFAR GLMPPRRVSQSPSPLPGSPGAQEGGV |
| Secondary structure | LLLLHHHHHLLLLLLLLLLLHHHHHHLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLEEL LLLLLLEELLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
