Difference between revisions of "NONHSAT007242"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>ctttccttataaggacaccggtaatataggattagtacccaccctaatgacctcattttaatttgattttctctgtaaagaccttatctccaaataaggtcccaccctaaggtactgggggttaggacttgagcataaaaaatttaaggacacaatccaactcataacaCTTCTTAATTAACTCAAAGCAGAAACCATGAAGAAAAAGTTCTCCTCTTATTTGGGGAATGGATTTCAGAAGAGACCAGAAGATGTTCTCGTGTTCTCACCACAGGGAAGGCAGAAGCACAGAGCCCCACAGGCTAAGAAAATGAGAGCATTGGCAACCCGTATGGCCCAAGACACATGCAAAAGCAAGTCCCAGGTGCCTCCTTCACATGATGCTGGCCTCAAAGACCCCATGAAGAGCAAAAAGCAGCCACTCTCTCAAAATAACAGAACTGCCTGCTTCATAAAAGAGCAACCACAAGCCCAAGAGAAAGATTCTGTGAATCCATCTAAGGACGTAGACCCCAGCAAGGGCATCTCTGTTCCATGCCAAAATCAAGAGGTTTCCACCAACACCATAGAACAAGGTCCTAGTTCC</dnaseq>| | sequence = <dnaseq>ctttccttataaggacaccggtaatataggattagtacccaccctaatgacctcattttaatttgattttctctgtaaagaccttatctccaaataaggtcccaccctaaggtactgggggttaggacttgagcataaaaaatttaaggacacaatccaactcataacaCTTCTTAATTAACTCAAAGCAGAAACCATGAAGAAAAAGTTCTCCTCTTATTTGGGGAATGGATTTCAGAAGAGACCAGAAGATGTTCTCGTGTTCTCACCACAGGGAAGGCAGAAGCACAGAGCCCCACAGGCTAAGAAAATGAGAGCATTGGCAACCCGTATGGCCCAAGACACATGCAAAAGCAAGTCCCAGGTGCCTCCTTCACATGATGCTGGCCTCAAAGACCCCATGAAGAGCAAAAAGCAGCCACTCTCTCAAAATAACAGAACTGCCTGCTTCATAAAAGAGCAACCACAAGCCCAAGAGAAAGATTCTGTGAATCCATCTAAGGACGTAGACCCCAGCAAGGGCATCTCTGTTCCATGCCAAAATCAAGAGGTTTCCACCAACACCATAGAACAAGGTCCTAGTTCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG003300]][[Category:Transcripts]] |
Latest revision as of 19:44, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT007242 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
586 nt |
| Genomic location |
chr1-:162824879..162825736 |
| Exon number |
2 |
| Exons |
162824879..162825149,162825422..162825736 |
| Genome context |
|
| Sequence |
000001 ctttccttat aaggacaccg gtaatatagg attagtaccc accctaatga cctcatttta atttgatttt ctctgtaaag 000080
000081 accttatctc caaataaggt cccaccctaa ggtactgggg gttaggactt gagcataaaa aatttaagga cacaatccaa 000160 000161 ctcataacaC TTCTTAATTA ACTCAAAGCA GAAACCATGA AGAAAAAGTT CTCCTCTTAT TTGGGGAATG GATTTCAGAA 000240 000241 GAGACCAGAA GATGTTCTCG TGTTCTCACC ACAGGGAAGG CAGAAGCACA GAGCCCCACA GGCTAAGAAA ATGAGAGCAT 000320 000321 TGGCAACCCG TATGGCCCAA GACACATGCA AAAGCAAGTC CCAGGTGCCT CCTTCACATG ATGCTGGCCT CAAAGACCCC 000400 000401 ATGAAGAGCA AAAAGCAGCC ACTCTCTCAA AATAACAGAA CTGCCTGCTT CATAAAAGAG CAACCACAAG CCCAAGAGAA 000480 000481 AGATTCTGTG AATCCATCTA AGGACGTAGA CCCCAGCAAG GGCATCTCTG TTCCATGCCA AAATCAAGAG GTTTCCACCA 000560 000561 ACACCATAGA ACAAGGTCCT AGTTCC |
Predicted Small Protein
| Name | NONHSAT007242_smProtein_227:313 |
| Length | 29 |
| Molecular weight | 3528.9664 |
| Aromaticity | 0.0714285714286 |
| Instability index | 87.0214285714 |
| Isoelectric point | 10.7501831055 |
| Runs | 5 |
| Runs residual | 0.0246478873239 |
| Runs probability | 0.0023670729553 |
| Amino acid sequence | MDFRRDQKMFSCSHHREGRSTEPHRLRK |
| Secondary structure | LLLHHHLLLEELLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
