Difference between revisions of "NONHSAT008884"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>GCAATCATAAAATAACTTTATTGGTCAGGTTAGCCACCACTCATGCTTTTCCTGTAATAAGGATCCTTTATAAAGGCATGATGGTGTTCACATGCAGATGCTTTCTGAAGAGCCCTGGGGCAGGGGGCAGCCTTGCCCCTCACATCGGAGCTCCTTTGTTGAAATGAGCTGGTTTGGCTTTTGTGGATTCCAGGTCTGGAGCCAAGAACGTAGTCCAAAGATCCCCTCTTCCCTTCTCAGGGAAGGTGCTTCAAAGCATACACAGTATCAGGGATGTGATGGCATCTGGGCAGAGCCTATACTTGGGCTAACTCTCCTCCAACAGTCCTTGCCCCTGACTGCCCAGATGGCTTTGTCCCAACCTTGCCCAAAGGGCAGGTGGGTTAAGCCCCAGGCAACATTACCTTTTGAAATGGGAAGAATTAAGTGCTCCCCAGCCAAACTATAAAGCAAAAGCCACCTTCACTAATGAGGATATAGCTCAGAGATGTGAAAGCAGAGGGTTGTATGCCCAGCACAGGCAAGATTTGGCTGCCTGGCCTGGGCTTCACGGACCCCAGCCAGAGCTGGTACTTTTTAACTATGGCCTTAGGACAAACCAGGTGAAACAGATTAACCACATCCTCCTTCTTTGGGCTAGCAAGTCCAGGGCTGCCTGGAGTCTGTCTCTACCATCAGGATATAGAATCTTCCTGCTTGGATAAAAGGAGAGGACAAACTGTGTTTCTCATACTTTAAAAACCATGTGGCCGCTACCTTTGTGGATAAAAACCCAGGTAGGATGCTGTTTGGAATGCAGAAAGTGCTGGGCAAGAATGGAACTACTGGGGCTGCTTTCTCAACTCAGCCAATTTGAGGTGTGTTTGGCCCATTGCAGATGCTGATGGTAAGCAAAGTCTGGCCTTTCCTCTTCTGAAGTCTTATCCACCTTCAAAGAGCTACCCAGCTGCCAAAATATAGCCCTATACATTGATCTAAAAGTGACTCCTGGTGTCCTTTCACCCTCAGACACAGTGTGGGTTGTCTCCACAGGTTGCTGGGCAGATGCTCACATGCCTTGGGGTCTCCTGACTCTGCTTAAGGCACAGAAGAGGCATCTGTGGAGGAAAGTGGAGTGGGTGAAGTGGATTTCAGAAGAGGCAGCTGGGCAAGAGGTATATTTTGAGAAGCAACAAATGGGAGCCCAGAGTAACTGCACGACCAGCCCAGCACAGAGGGAGAGCTGTCAAGTGCTGCTCACAGACAGCCAGGGATTGTTAGAAAAGTATGGTTATATACTATTGCCCATGCCACTTTTGAAGTTCCATGACCTCAGATCATTGGGAAGAACTTAAGAGCCGTGAGATTTATGGGGTTGGAACATCCAGGGATCCTTCCATCTACCACCACTTCTGTCCCTGGAAAAGAGTGAGCTTCTGCCTATGTCCTCAGCAGAAGGCTGCCTGTCCCTGATCGCCCCCCCTAACCCCACCTACAGGAAAGAAGACTACAGAGGGTGCCCGTGGACTTCTGTCACATGGTCCATCCTGGACCTTCCAGCAAAAGCCAAACCAAACCATCAAGCCAAATGCCACGGGGGCTCTCCGCCCAGTACCCGGTGCCAGGGCTGCTCAGATCTCGATGAGGCTGGCAAGGCGCAGGCAGAGGGGCGCGTCGGCAGGCATGGCGCTGCGCTTGATCTCGTTCCCGTCCAGGCGCAGCACCTGCAGCTTGGAGAAGTTCACGACGTCCACCACGGTGCAGAAGCTGCTGATGGAGAAC</dnaseq>| | sequence = <dnaseq>GCAATCATAAAATAACTTTATTGGTCAGGTTAGCCACCACTCATGCTTTTCCTGTAATAAGGATCCTTTATAAAGGCATGATGGTGTTCACATGCAGATGCTTTCTGAAGAGCCCTGGGGCAGGGGGCAGCCTTGCCCCTCACATCGGAGCTCCTTTGTTGAAATGAGCTGGTTTGGCTTTTGTGGATTCCAGGTCTGGAGCCAAGAACGTAGTCCAAAGATCCCCTCTTCCCTTCTCAGGGAAGGTGCTTCAAAGCATACACAGTATCAGGGATGTGATGGCATCTGGGCAGAGCCTATACTTGGGCTAACTCTCCTCCAACAGTCCTTGCCCCTGACTGCCCAGATGGCTTTGTCCCAACCTTGCCCAAAGGGCAGGTGGGTTAAGCCCCAGGCAACATTACCTTTTGAAATGGGAAGAATTAAGTGCTCCCCAGCCAAACTATAAAGCAAAAGCCACCTTCACTAATGAGGATATAGCTCAGAGATGTGAAAGCAGAGGGTTGTATGCCCAGCACAGGCAAGATTTGGCTGCCTGGCCTGGGCTTCACGGACCCCAGCCAGAGCTGGTACTTTTTAACTATGGCCTTAGGACAAACCAGGTGAAACAGATTAACCACATCCTCCTTCTTTGGGCTAGCAAGTCCAGGGCTGCCTGGAGTCTGTCTCTACCATCAGGATATAGAATCTTCCTGCTTGGATAAAAGGAGAGGACAAACTGTGTTTCTCATACTTTAAAAACCATGTGGCCGCTACCTTTGTGGATAAAAACCCAGGTAGGATGCTGTTTGGAATGCAGAAAGTGCTGGGCAAGAATGGAACTACTGGGGCTGCTTTCTCAACTCAGCCAATTTGAGGTGTGTTTGGCCCATTGCAGATGCTGATGGTAAGCAAAGTCTGGCCTTTCCTCTTCTGAAGTCTTATCCACCTTCAAAGAGCTACCCAGCTGCCAAAATATAGCCCTATACATTGATCTAAAAGTGACTCCTGGTGTCCTTTCACCCTCAGACACAGTGTGGGTTGTCTCCACAGGTTGCTGGGCAGATGCTCACATGCCTTGGGGTCTCCTGACTCTGCTTAAGGCACAGAAGAGGCATCTGTGGAGGAAAGTGGAGTGGGTGAAGTGGATTTCAGAAGAGGCAGCTGGGCAAGAGGTATATTTTGAGAAGCAACAAATGGGAGCCCAGAGTAACTGCACGACCAGCCCAGCACAGAGGGAGAGCTGTCAAGTGCTGCTCACAGACAGCCAGGGATTGTTAGAAAAGTATGGTTATATACTATTGCCCATGCCACTTTTGAAGTTCCATGACCTCAGATCATTGGGAAGAACTTAAGAGCCGTGAGATTTATGGGGTTGGAACATCCAGGGATCCTTCCATCTACCACCACTTCTGTCCCTGGAAAAGAGTGAGCTTCTGCCTATGTCCTCAGCAGAAGGCTGCCTGTCCCTGATCGCCCCCCCTAACCCCACCTACAGGAAAGAAGACTACAGAGGGTGCCCGTGGACTTCTGTCACATGGTCCATCCTGGACCTTCCAGCAAAAGCCAAACCAAACCATCAAGCCAAATGCCACGGGGGCTCTCCGCCCAGTACCCGGTGCCAGGGCTGCTCAGATCTCGATGAGGCTGGCAAGGCGCAGGCAGAGGGGCGCGTCGGCAGGCATGGCGCTGCGCTTGATCTCGTTCCCGTCCAGGCGCAGCACCTGCAGCTTGGAGAAGTTCACGACGTCCACCACGGTGCAGAAGCTGCTGATGGAGAAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG003993]][[Category:Transcripts]] |
Latest revision as of 19:51, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT008884 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1761 nt |
Genomic location |
chr1+:203309757..203311621 |
Exon number |
2 |
Exons |
203309757..203310734,203310839..203311621 |
Genome context |
|
Sequence |
000001 GCAATCATAA AATAACTTTA TTGGTCAGGT TAGCCACCAC TCATGCTTTT CCTGTAATAA GGATCCTTTA TAAAGGCATG 000080
000081 ATGGTGTTCA CATGCAGATG CTTTCTGAAG AGCCCTGGGG CAGGGGGCAG CCTTGCCCCT CACATCGGAG CTCCTTTGTT 000160 000161 GAAATGAGCT GGTTTGGCTT TTGTGGATTC CAGGTCTGGA GCCAAGAACG TAGTCCAAAG ATCCCCTCTT CCCTTCTCAG 000240 000241 GGAAGGTGCT TCAAAGCATA CACAGTATCA GGGATGTGAT GGCATCTGGG CAGAGCCTAT ACTTGGGCTA ACTCTCCTCC 000320 000321 AACAGTCCTT GCCCCTGACT GCCCAGATGG CTTTGTCCCA ACCTTGCCCA AAGGGCAGGT GGGTTAAGCC CCAGGCAACA 000400 000401 TTACCTTTTG AAATGGGAAG AATTAAGTGC TCCCCAGCCA AACTATAAAG CAAAAGCCAC CTTCACTAAT GAGGATATAG 000480 000481 CTCAGAGATG TGAAAGCAGA GGGTTGTATG CCCAGCACAG GCAAGATTTG GCTGCCTGGC CTGGGCTTCA CGGACCCCAG 000560 000561 CCAGAGCTGG TACTTTTTAA CTATGGCCTT AGGACAAACC AGGTGAAACA GATTAACCAC ATCCTCCTTC TTTGGGCTAG 000640 000641 CAAGTCCAGG GCTGCCTGGA GTCTGTCTCT ACCATCAGGA TATAGAATCT TCCTGCTTGG ATAAAAGGAG AGGACAAACT 000720 000721 GTGTTTCTCA TACTTTAAAA ACCATGTGGC CGCTACCTTT GTGGATAAAA ACCCAGGTAG GATGCTGTTT GGAATGCAGA 000800 000801 AAGTGCTGGG CAAGAATGGA ACTACTGGGG CTGCTTTCTC AACTCAGCCA ATTTGAGGTG TGTTTGGCCC ATTGCAGATG 000880 000881 CTGATGGTAA GCAAAGTCTG GCCTTTCCTC TTCTGAAGTC TTATCCACCT TCAAAGAGCT ACCCAGCTGC CAAAATATAG 000960 000961 CCCTATACAT TGATCTAAAA GTGACTCCTG GTGTCCTTTC ACCCTCAGAC ACAGTGTGGG TTGTCTCCAC AGGTTGCTGG 001040 001041 GCAGATGCTC ACATGCCTTG GGGTCTCCTG ACTCTGCTTA AGGCACAGAA GAGGCATCTG TGGAGGAAAG TGGAGTGGGT 001120 001121 GAAGTGGATT TCAGAAGAGG CAGCTGGGCA AGAGGTATAT TTTGAGAAGC AACAAATGGG AGCCCAGAGT AACTGCACGA 001200 001201 CCAGCCCAGC ACAGAGGGAG AGCTGTCAAG TGCTGCTCAC AGACAGCCAG GGATTGTTAG AAAAGTATGG TTATATACTA 001280 001281 TTGCCCATGC CACTTTTGAA GTTCCATGAC CTCAGATCAT TGGGAAGAAC TTAAGAGCCG TGAGATTTAT GGGGTTGGAA 001360 001361 CATCCAGGGA TCCTTCCATC TACCACCACT TCTGTCCCTG GAAAAGAGTG AGCTTCTGCC TATGTCCTCA GCAGAAGGCT 001440 001441 GCCTGTCCCT GATCGCCCCC CCTAACCCCA CCTACAGGAA AGAAGACTAC AGAGGGTGCC CGTGGACTTC TGTCACATGG 001520 001521 TCCATCCTGG ACCTTCCAGC AAAAGCCAAA CCAAACCATC AAGCCAAATG CCACGGGGGC TCTCCGCCCA GTACCCGGTG 001600 001601 CCAGGGCTGC TCAGATCTCG ATGAGGCTGG CAAGGCGCAG GCAGAGGGGC GCGTCGGCAG GCATGGCGCT GCGCTTGATC 001680 001681 TCGTTCCCGT CCAGGCGCAG CACCTGCAGC TTGGAGAAGT TCACGACGTC CACCACGGTG CAGAAGCTGC TGATGGAGAA 001760 001761 C |
Predicted Small Protein
Name | NONHSAT008884_smProtein_1052:1333 |
Length | 94 |
Molecular weight | 10806.4627 |
Aromaticity | 0.0967741935484 |
Instability index | 62.1129032258 |
Isoelectric point | 9.03106689453 |
Runs | 13 |
Runs residual | 0.00886101154918 |
Runs probability | 0.0331077684019 |
Amino acid sequence | MPWGLLTLLKAQKRHLWRKVEWVKWISEEAAGQEVYFEKQQMGAQSNCTTSPAQRESCQV LLTDSQGLLEKYGYILLPMPLLKFHDLRSLGRT |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEHHHHHLLLLLLLLLLHHHHHHHHH EEELLHHHHHHLLEEEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |