Difference between revisions of "NONHSAT012532"

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sequence = <dnaseq>TTTTGTACAAATGGGATCTCACTATGTTGCCTATGCTGGTCTTGAACACCTAGGCCCAACGATCCTCCAGCCTCGCCTTCTAAAGTGTTGGGATTCCAAGAGTGAGCCATGGTGTCTGGCCTCAAAAATCTTTAATACCTTTATAGAGTTGTGCAATCATCACCACAATCCAGTTTTGAGACATTTCCATTACTCCAAAAAGATCATTCATGCCATTTGCAGTTAACCACCACTCCCATCTCCAACCTCAGCTACTGTTGATCTTGCTGTTTGCACAGATTTGCCTTTATGGGAAGTTTCATATAAAAAGAATCAAACAATATGTGGCCTTTTGCATCTGGCTTCTTTCACTTAATGCTTTTGAGGCGTATGCATGTTGTAGTGAGTATCAGGTGTACGTCATGTATACGCAGGAATATCTGTCCCTTTGCTGTCGGGGAGGACGCCATCGCATGGAGGTCCTGCATTTTGTTTTTCTGTTTCTCAGTTGACGGTCATGTGGATTGTTTACAGGTCTGGGCTATTATGAATAATGCCACTATGAACATCTGTGTCCAGGTTTCTGAGTGGACACACACGGCTAATTTTATAATAAAAAAAACAAAACCAAAGGACCAAAATGAATTCTGGAACTGTTTCTGGAATACGTTTCCTTTTACCAAAATGGGAATTCTAATAGCAGGGCAGGAAATGTAAAGTAGGAGAGAAAGAAGTGGGCTCACAGCAGCCTTTCCCCTCCTCGGATTTGGGAACAAAGAGGCAGGATTGTCCCACTCTAGAAGTGGCTCATATTCGCACAGTTCATCCAAAGCTACAGAACACGCTCAACATCCCATCTGCCCCGCGGCACCTCTGATATCGATCTCAATCCAAACACCCACCCCTCTCTTGAGTCTCTTAGTTCAAGGACAGCAAATTCAGGACATCGCACTTCCCTGCCCCTGATGCATTTAGTGAGAGCGGGGGTTTGAGTTTGGATGACTGTGGAGAAAAGCCCCAAGCACCAGTGTCAATTCCTGGGCTGAGACTTTAAGGTTTAGCAATTCAAGTGTTTCAGCTAGGTCCCTTCCCAGTGTACAAAGGTCAAAGTTTGCAGTTATGGAAGGAAAAGGATCAGAAAAAACCATGGAAAATAGGATCTGGTTCTATAAGCAGGAAAGAGATGCAGGAAACAATTTAGAGGAAAAGAGGCAAAAAGTATACTGGCTCTCCAAGCTGGGGTGTCTTATTCACCAAGAAGTGGCGAGAAGCAGACAGACAGCACGTTTTGTCGGGGGACAGTGGTTTTTGTTTTTTTGTGTTTTTTTTGAGACAGAGTCTCACTGTATTGCCCAGGCTGGAGTGTAGTGGTGCAATCTCGG</dnaseq>|
 
sequence = <dnaseq>TTTTGTACAAATGGGATCTCACTATGTTGCCTATGCTGGTCTTGAACACCTAGGCCCAACGATCCTCCAGCCTCGCCTTCTAAAGTGTTGGGATTCCAAGAGTGAGCCATGGTGTCTGGCCTCAAAAATCTTTAATACCTTTATAGAGTTGTGCAATCATCACCACAATCCAGTTTTGAGACATTTCCATTACTCCAAAAAGATCATTCATGCCATTTGCAGTTAACCACCACTCCCATCTCCAACCTCAGCTACTGTTGATCTTGCTGTTTGCACAGATTTGCCTTTATGGGAAGTTTCATATAAAAAGAATCAAACAATATGTGGCCTTTTGCATCTGGCTTCTTTCACTTAATGCTTTTGAGGCGTATGCATGTTGTAGTGAGTATCAGGTGTACGTCATGTATACGCAGGAATATCTGTCCCTTTGCTGTCGGGGAGGACGCCATCGCATGGAGGTCCTGCATTTTGTTTTTCTGTTTCTCAGTTGACGGTCATGTGGATTGTTTACAGGTCTGGGCTATTATGAATAATGCCACTATGAACATCTGTGTCCAGGTTTCTGAGTGGACACACACGGCTAATTTTATAATAAAAAAAACAAAACCAAAGGACCAAAATGAATTCTGGAACTGTTTCTGGAATACGTTTCCTTTTACCAAAATGGGAATTCTAATAGCAGGGCAGGAAATGTAAAGTAGGAGAGAAAGAAGTGGGCTCACAGCAGCCTTTCCCCTCCTCGGATTTGGGAACAAAGAGGCAGGATTGTCCCACTCTAGAAGTGGCTCATATTCGCACAGTTCATCCAAAGCTACAGAACACGCTCAACATCCCATCTGCCCCGCGGCACCTCTGATATCGATCTCAATCCAAACACCCACCCCTCTCTTGAGTCTCTTAGTTCAAGGACAGCAAATTCAGGACATCGCACTTCCCTGCCCCTGATGCATTTAGTGAGAGCGGGGGTTTGAGTTTGGATGACTGTGGAGAAAAGCCCCAAGCACCAGTGTCAATTCCTGGGCTGAGACTTTAAGGTTTAGCAATTCAAGTGTTTCAGCTAGGTCCCTTCCCAGTGTACAAAGGTCAAAGTTTGCAGTTATGGAAGGAAAAGGATCAGAAAAAACCATGGAAAATAGGATCTGGTTCTATAAGCAGGAAAGAGATGCAGGAAACAATTTAGAGGAAAAGAGGCAAAAAGTATACTGGCTCTCCAAGCTGGGGTGTCTTATTCACCAAGAAGTGGCGAGAAGCAGACAGACAGCACGTTTTGTCGGGGGACAGTGGTTTTTGTTTTTTTGTGTTTTTTTTGAGACAGAGTCTCACTGTATTGCCCAGGCTGGAGTGTAGTGGTGCAATCTCGG</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG005502]][[Category:Transcripts]]

Latest revision as of 20:06, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT012532

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1361 nt

Genomic location

chr10+:29743271..29744631

Exon number

1

Exons

29743271..29744631

Genome context

Sequence
000001 TTTTGTACAA ATGGGATCTC ACTATGTTGC CTATGCTGGT CTTGAACACC TAGGCCCAAC GATCCTCCAG CCTCGCCTTC 000080
000081 TAAAGTGTTG GGATTCCAAG AGTGAGCCAT GGTGTCTGGC CTCAAAAATC TTTAATACCT TTATAGAGTT GTGCAATCAT 000160
000161 CACCACAATC CAGTTTTGAG ACATTTCCAT TACTCCAAAA AGATCATTCA TGCCATTTGC AGTTAACCAC CACTCCCATC 000240
000241 TCCAACCTCA GCTACTGTTG ATCTTGCTGT TTGCACAGAT TTGCCTTTAT GGGAAGTTTC ATATAAAAAG AATCAAACAA 000320
000321 TATGTGGCCT TTTGCATCTG GCTTCTTTCA CTTAATGCTT TTGAGGCGTA TGCATGTTGT AGTGAGTATC AGGTGTACGT 000400
000401 CATGTATACG CAGGAATATC TGTCCCTTTG CTGTCGGGGA GGACGCCATC GCATGGAGGT CCTGCATTTT GTTTTTCTGT 000480
000481 TTCTCAGTTG ACGGTCATGT GGATTGTTTA CAGGTCTGGG CTATTATGAA TAATGCCACT ATGAACATCT GTGTCCAGGT 000560
000561 TTCTGAGTGG ACACACACGG CTAATTTTAT AATAAAAAAA ACAAAACCAA AGGACCAAAA TGAATTCTGG AACTGTTTCT 000640
000641 GGAATACGTT TCCTTTTACC AAAATGGGAA TTCTAATAGC AGGGCAGGAA ATGTAAAGTA GGAGAGAAAG AAGTGGGCTC 000720
000721 ACAGCAGCCT TTCCCCTCCT CGGATTTGGG AACAAAGAGG CAGGATTGTC CCACTCTAGA AGTGGCTCAT ATTCGCACAG 000800
000801 TTCATCCAAA GCTACAGAAC ACGCTCAACA TCCCATCTGC CCCGCGGCAC CTCTGATATC GATCTCAATC CAAACACCCA 000880
000881 CCCCTCTCTT GAGTCTCTTA GTTCAAGGAC AGCAAATTCA GGACATCGCA CTTCCCTGCC CCTGATGCAT TTAGTGAGAG 000960
000961 CGGGGGTTTG AGTTTGGATG ACTGTGGAGA AAAGCCCCAA GCACCAGTGT CAATTCCTGG GCTGAGACTT TAAGGTTTAG 001040
001041 CAATTCAAGT GTTTCAGCTA GGTCCCTTCC CAGTGTACAA AGGTCAAAGT TTGCAGTTAT GGAAGGAAAA GGATCAGAAA 001120
001121 AAACCATGGA AAATAGGATC TGGTTCTATA AGCAGGAAAG AGATGCAGGA AACAATTTAG AGGAAAAGAG GCAAAAAGTA 001200
001201 TACTGGCTCT CCAAGCTGGG GTGTCTTATT CACCAAGAAG TGGCGAGAAG CAGACAGACA GCACGTTTTG TCGGGGGACA 001280
001281 GTGGTTTTTG TTTTTTTGTG TTTTTTTTGA GACAGAGTCT CACTGTATTG CCCAGGCTGG AGTGTAGTGG TGCAATCTCG 001360
001361 G
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Predicted Small Protein

Name NONHSAT012532_smProtein_209:490
Length 94
Molecular weight 11068.0854
Aromaticity 0.172043010753
Instability index 48.0978494624
Isoelectric point 8.58551025391
Runs 12
Runs residual 0.00189167662286
Runs probability 0.0227654124713
Amino acid sequence MPFAVNHHSHLQPQLLLILLFAQICLYGKFHIKRIKQYVAFCIWLLSLNAFEAYACCSEY
QVYVMYTQEYLSLCCRGGRHRMEVLHFVFLFLS
Secondary structure LLEEELLLLLHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHL
LEEEEHHHHHHHHHHLLLLHHHHHHHHHHHHLL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToooooo
ooooooooooooooooooooooooooooooooo