Difference between revisions of "NONHSAT012532"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTTGTACAAATGGGATCTCACTATGTTGCCTATGCTGGTCTTGAACACCTAGGCCCAACGATCCTCCAGCCTCGCCTTCTAAAGTGTTGGGATTCCAAGAGTGAGCCATGGTGTCTGGCCTCAAAAATCTTTAATACCTTTATAGAGTTGTGCAATCATCACCACAATCCAGTTTTGAGACATTTCCATTACTCCAAAAAGATCATTCATGCCATTTGCAGTTAACCACCACTCCCATCTCCAACCTCAGCTACTGTTGATCTTGCTGTTTGCACAGATTTGCCTTTATGGGAAGTTTCATATAAAAAGAATCAAACAATATGTGGCCTTTTGCATCTGGCTTCTTTCACTTAATGCTTTTGAGGCGTATGCATGTTGTAGTGAGTATCAGGTGTACGTCATGTATACGCAGGAATATCTGTCCCTTTGCTGTCGGGGAGGACGCCATCGCATGGAGGTCCTGCATTTTGTTTTTCTGTTTCTCAGTTGACGGTCATGTGGATTGTTTACAGGTCTGGGCTATTATGAATAATGCCACTATGAACATCTGTGTCCAGGTTTCTGAGTGGACACACACGGCTAATTTTATAATAAAAAAAACAAAACCAAAGGACCAAAATGAATTCTGGAACTGTTTCTGGAATACGTTTCCTTTTACCAAAATGGGAATTCTAATAGCAGGGCAGGAAATGTAAAGTAGGAGAGAAAGAAGTGGGCTCACAGCAGCCTTTCCCCTCCTCGGATTTGGGAACAAAGAGGCAGGATTGTCCCACTCTAGAAGTGGCTCATATTCGCACAGTTCATCCAAAGCTACAGAACACGCTCAACATCCCATCTGCCCCGCGGCACCTCTGATATCGATCTCAATCCAAACACCCACCCCTCTCTTGAGTCTCTTAGTTCAAGGACAGCAAATTCAGGACATCGCACTTCCCTGCCCCTGATGCATTTAGTGAGAGCGGGGGTTTGAGTTTGGATGACTGTGGAGAAAAGCCCCAAGCACCAGTGTCAATTCCTGGGCTGAGACTTTAAGGTTTAGCAATTCAAGTGTTTCAGCTAGGTCCCTTCCCAGTGTACAAAGGTCAAAGTTTGCAGTTATGGAAGGAAAAGGATCAGAAAAAACCATGGAAAATAGGATCTGGTTCTATAAGCAGGAAAGAGATGCAGGAAACAATTTAGAGGAAAAGAGGCAAAAAGTATACTGGCTCTCCAAGCTGGGGTGTCTTATTCACCAAGAAGTGGCGAGAAGCAGACAGACAGCACGTTTTGTCGGGGGACAGTGGTTTTTGTTTTTTTGTGTTTTTTTTGAGACAGAGTCTCACTGTATTGCCCAGGCTGGAGTGTAGTGGTGCAATCTCGG</dnaseq>| | sequence = <dnaseq>TTTTGTACAAATGGGATCTCACTATGTTGCCTATGCTGGTCTTGAACACCTAGGCCCAACGATCCTCCAGCCTCGCCTTCTAAAGTGTTGGGATTCCAAGAGTGAGCCATGGTGTCTGGCCTCAAAAATCTTTAATACCTTTATAGAGTTGTGCAATCATCACCACAATCCAGTTTTGAGACATTTCCATTACTCCAAAAAGATCATTCATGCCATTTGCAGTTAACCACCACTCCCATCTCCAACCTCAGCTACTGTTGATCTTGCTGTTTGCACAGATTTGCCTTTATGGGAAGTTTCATATAAAAAGAATCAAACAATATGTGGCCTTTTGCATCTGGCTTCTTTCACTTAATGCTTTTGAGGCGTATGCATGTTGTAGTGAGTATCAGGTGTACGTCATGTATACGCAGGAATATCTGTCCCTTTGCTGTCGGGGAGGACGCCATCGCATGGAGGTCCTGCATTTTGTTTTTCTGTTTCTCAGTTGACGGTCATGTGGATTGTTTACAGGTCTGGGCTATTATGAATAATGCCACTATGAACATCTGTGTCCAGGTTTCTGAGTGGACACACACGGCTAATTTTATAATAAAAAAAACAAAACCAAAGGACCAAAATGAATTCTGGAACTGTTTCTGGAATACGTTTCCTTTTACCAAAATGGGAATTCTAATAGCAGGGCAGGAAATGTAAAGTAGGAGAGAAAGAAGTGGGCTCACAGCAGCCTTTCCCCTCCTCGGATTTGGGAACAAAGAGGCAGGATTGTCCCACTCTAGAAGTGGCTCATATTCGCACAGTTCATCCAAAGCTACAGAACACGCTCAACATCCCATCTGCCCCGCGGCACCTCTGATATCGATCTCAATCCAAACACCCACCCCTCTCTTGAGTCTCTTAGTTCAAGGACAGCAAATTCAGGACATCGCACTTCCCTGCCCCTGATGCATTTAGTGAGAGCGGGGGTTTGAGTTTGGATGACTGTGGAGAAAAGCCCCAAGCACCAGTGTCAATTCCTGGGCTGAGACTTTAAGGTTTAGCAATTCAAGTGTTTCAGCTAGGTCCCTTCCCAGTGTACAAAGGTCAAAGTTTGCAGTTATGGAAGGAAAAGGATCAGAAAAAACCATGGAAAATAGGATCTGGTTCTATAAGCAGGAAAGAGATGCAGGAAACAATTTAGAGGAAAAGAGGCAAAAAGTATACTGGCTCTCCAAGCTGGGGTGTCTTATTCACCAAGAAGTGGCGAGAAGCAGACAGACAGCACGTTTTGTCGGGGGACAGTGGTTTTTGTTTTTTTGTGTTTTTTTTGAGACAGAGTCTCACTGTATTGCCCAGGCTGGAGTGTAGTGGTGCAATCTCGG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG005502]][[Category:Transcripts]] |
Latest revision as of 20:06, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT012532 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1361 nt |
Genomic location |
chr10+:29743271..29744631 |
Exon number |
1 |
Exons |
29743271..29744631 |
Genome context |
|
Sequence |
000001 TTTTGTACAA ATGGGATCTC ACTATGTTGC CTATGCTGGT CTTGAACACC TAGGCCCAAC GATCCTCCAG CCTCGCCTTC 000080
000081 TAAAGTGTTG GGATTCCAAG AGTGAGCCAT GGTGTCTGGC CTCAAAAATC TTTAATACCT TTATAGAGTT GTGCAATCAT 000160 000161 CACCACAATC CAGTTTTGAG ACATTTCCAT TACTCCAAAA AGATCATTCA TGCCATTTGC AGTTAACCAC CACTCCCATC 000240 000241 TCCAACCTCA GCTACTGTTG ATCTTGCTGT TTGCACAGAT TTGCCTTTAT GGGAAGTTTC ATATAAAAAG AATCAAACAA 000320 000321 TATGTGGCCT TTTGCATCTG GCTTCTTTCA CTTAATGCTT TTGAGGCGTA TGCATGTTGT AGTGAGTATC AGGTGTACGT 000400 000401 CATGTATACG CAGGAATATC TGTCCCTTTG CTGTCGGGGA GGACGCCATC GCATGGAGGT CCTGCATTTT GTTTTTCTGT 000480 000481 TTCTCAGTTG ACGGTCATGT GGATTGTTTA CAGGTCTGGG CTATTATGAA TAATGCCACT ATGAACATCT GTGTCCAGGT 000560 000561 TTCTGAGTGG ACACACACGG CTAATTTTAT AATAAAAAAA ACAAAACCAA AGGACCAAAA TGAATTCTGG AACTGTTTCT 000640 000641 GGAATACGTT TCCTTTTACC AAAATGGGAA TTCTAATAGC AGGGCAGGAA ATGTAAAGTA GGAGAGAAAG AAGTGGGCTC 000720 000721 ACAGCAGCCT TTCCCCTCCT CGGATTTGGG AACAAAGAGG CAGGATTGTC CCACTCTAGA AGTGGCTCAT ATTCGCACAG 000800 000801 TTCATCCAAA GCTACAGAAC ACGCTCAACA TCCCATCTGC CCCGCGGCAC CTCTGATATC GATCTCAATC CAAACACCCA 000880 000881 CCCCTCTCTT GAGTCTCTTA GTTCAAGGAC AGCAAATTCA GGACATCGCA CTTCCCTGCC CCTGATGCAT TTAGTGAGAG 000960 000961 CGGGGGTTTG AGTTTGGATG ACTGTGGAGA AAAGCCCCAA GCACCAGTGT CAATTCCTGG GCTGAGACTT TAAGGTTTAG 001040 001041 CAATTCAAGT GTTTCAGCTA GGTCCCTTCC CAGTGTACAA AGGTCAAAGT TTGCAGTTAT GGAAGGAAAA GGATCAGAAA 001120 001121 AAACCATGGA AAATAGGATC TGGTTCTATA AGCAGGAAAG AGATGCAGGA AACAATTTAG AGGAAAAGAG GCAAAAAGTA 001200 001201 TACTGGCTCT CCAAGCTGGG GTGTCTTATT CACCAAGAAG TGGCGAGAAG CAGACAGACA GCACGTTTTG TCGGGGGACA 001280 001281 GTGGTTTTTG TTTTTTTGTG TTTTTTTTGA GACAGAGTCT CACTGTATTG CCCAGGCTGG AGTGTAGTGG TGCAATCTCG 001360 001361 G |
Predicted Small Protein
Name | NONHSAT012532_smProtein_209:490 |
Length | 94 |
Molecular weight | 11068.0854 |
Aromaticity | 0.172043010753 |
Instability index | 48.0978494624 |
Isoelectric point | 8.58551025391 |
Runs | 12 |
Runs residual | 0.00189167662286 |
Runs probability | 0.0227654124713 |
Amino acid sequence | MPFAVNHHSHLQPQLLLILLFAQICLYGKFHIKRIKQYVAFCIWLLSLNAFEAYACCSEY QVYVMYTQEYLSLCCRGGRHRMEVLHFVFLFLS |
Secondary structure | LLEEELLLLLHHHHHHHHHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHL LEEEEHHHHHHHHHHLLLLHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTToooooo ooooooooooooooooooooooooooooooooo |