Difference between revisions of "NONHSAT018780"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GAAAGATCATTCATGTATATTCTAAAATTACCACAGTCATAAAAAGTCTTGGACTTTCATGAGGAAATAGCATAGCTAGATATGAAAAAATATAGAAAATCTTCATCAATGGAACTATTCTTGGGGTAGACACTAATCATATGAAAAGACAAATGCTCATTCCCTAAGATAGCCTGAATCTCATTTAAAATGTAGAAAACCCCTTTTTAGTAAAGAGACATCTTCTACAGTAACCACTGAGAAGAAGTGGAAGTTTTTCATCTCCTTTTTTTATTCAAAAAGAAAAAGAATTTCTCAATTTCTGAACCACAGTTCACTTTAGTTAACCCCTTTGATTGCCTAATAATGCCAAAAATGATTTCTCTGTTAATTGGCTTCACATTTTTGCTCTATGCTGAAGTAGTATTGGGAACTGCAGTGTAGCTTCCATCTCTGTTTGGAGGTACACTGATCTGATCTGATACTAGAGAAGATAAAAAATGAATTAGCAAATTGTGAACACAATGAAATGACTGACGTAGGTGTAGATTCCAACATTTTTCTGAAGGTGTCTTGACCAAAAAAAAAAAAAAAAAAGGCACGTGTGAAACCTTTCCATTCTGTTCTTGATGGCTTGGCTTTAATGGCATATGATTATGTCCACACTTATTCTTTCAGCTTTCTTAAAGAGAATATTCAGTTTTAAAGATCATAGCCACTTGTTTTGAGATTTATGTATTAGCTTCGGAGATCAGAACATAAGAATTTGGGGTATGCAAGTCAACTCCCTCACTTTCTTTTAAAAATCCTGGGAAATCCATTATACCTTCTGTGCCTGATTTTCTTCCTTTGCAAGTGGGTTGCTTGGCGTCCAGCTCAGCCACTAATGCAAGTCACCACAACAGGTACGTCTTCAAATACCATCTCAGCAGGCTGGGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATGATGAAGATTTTATCTCCAGCACCAGTAAGAATAATCAATTACAGTACAGCCATTTATGCAAGGCTTATTGATTAATCTGAGTGATACCAAATTGTATCTCTCTTGAGAAGTAGTTAATGTGAAAAATGGGTGAACCTATGATCATACCTTAGTTATATCTTGATGAGATTATGGAAGAAGAAATAGAATGTTTTGAGAAGTGGGGAAAATATCTCACAAAATTTCTCTTGTCTCATGTTCTTCCTGTTTTATTTATCTATGGGATCTACTGCTACAGATTGTCTTTGAATGATCAGGCTTTATCAGAGAATGACATTAAAACAGTAcaaaaaa</dnaseq>| | sequence = <dnaseq>GAAAGATCATTCATGTATATTCTAAAATTACCACAGTCATAAAAAGTCTTGGACTTTCATGAGGAAATAGCATAGCTAGATATGAAAAAATATAGAAAATCTTCATCAATGGAACTATTCTTGGGGTAGACACTAATCATATGAAAAGACAAATGCTCATTCCCTAAGATAGCCTGAATCTCATTTAAAATGTAGAAAACCCCTTTTTAGTAAAGAGACATCTTCTACAGTAACCACTGAGAAGAAGTGGAAGTTTTTCATCTCCTTTTTTTATTCAAAAAGAAAAAGAATTTCTCAATTTCTGAACCACAGTTCACTTTAGTTAACCCCTTTGATTGCCTAATAATGCCAAAAATGATTTCTCTGTTAATTGGCTTCACATTTTTGCTCTATGCTGAAGTAGTATTGGGAACTGCAGTGTAGCTTCCATCTCTGTTTGGAGGTACACTGATCTGATCTGATACTAGAGAAGATAAAAAATGAATTAGCAAATTGTGAACACAATGAAATGACTGACGTAGGTGTAGATTCCAACATTTTTCTGAAGGTGTCTTGACCAAAAAAAAAAAAAAAAAAGGCACGTGTGAAACCTTTCCATTCTGTTCTTGATGGCTTGGCTTTAATGGCATATGATTATGTCCACACTTATTCTTTCAGCTTTCTTAAAGAGAATATTCAGTTTTAAAGATCATAGCCACTTGTTTTGAGATTTATGTATTAGCTTCGGAGATCAGAACATAAGAATTTGGGGTATGCAAGTCAACTCCCTCACTTTCTTTTAAAAATCCTGGGAAATCCATTATACCTTCTGTGCCTGATTTTCTTCCTTTGCAAGTGGGTTGCTTGGCGTCCAGCTCAGCCACTAATGCAAGTCACCACAACAGGTACGTCTTCAAATACCATCTCAGCAGGCTGGGAGCCAAATGAAGAAAATGAAGATGAAAGAGACAGACACCTCAGTTTTTCTGGATCAGGCATTGATGATGATGAAGATTTTATCTCCAGCACCAGTAAGAATAATCAATTACAGTACAGCCATTTATGCAAGGCTTATTGATTAATCTGAGTGATACCAAATTGTATCTCTCTTGAGAAGTAGTTAATGTGAAAAATGGGTGAACCTATGATCATACCTTAGTTATATCTTGATGAGATTATGGAAGAAGAAATAGAATGTTTTGAGAAGTGGGGAAAATATCTCACAAAATTTCTCTTGTCTCATGTTCTTCCTGTTTTATTTATCTATGGGATCTACTGCTACAGATTGTCTTTGAATGATCAGGCTTTATCAGAGAATGACATTAAAACAGTAcaaaaaa</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG008051]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 20:30, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT018780 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
1319 nt |
| Genomic location |
chr11+:35218709..35220102 |
| Exon number |
2 |
| Exons |
35218709..35219340,35219416..35220102 |
| Genome context |
|
| Sequence |
000001 GAAAGATCAT TCATGTATAT TCTAAAATTA CCACAGTCAT AAAAAGTCTT GGACTTTCAT GAGGAAATAG CATAGCTAGA 000080
000081 TATGAAAAAA TATAGAAAAT CTTCATCAAT GGAACTATTC TTGGGGTAGA CACTAATCAT ATGAAAAGAC AAATGCTCAT 000160 000161 TCCCTAAGAT AGCCTGAATC TCATTTAAAA TGTAGAAAAC CCCTTTTTAG TAAAGAGACA TCTTCTACAG TAACCACTGA 000240 000241 GAAGAAGTGG AAGTTTTTCA TCTCCTTTTT TTATTCAAAA AGAAAAAGAA TTTCTCAATT TCTGAACCAC AGTTCACTTT 000320 000321 AGTTAACCCC TTTGATTGCC TAATAATGCC AAAAATGATT TCTCTGTTAA TTGGCTTCAC ATTTTTGCTC TATGCTGAAG 000400 000401 TAGTATTGGG AACTGCAGTG TAGCTTCCAT CTCTGTTTGG AGGTACACTG ATCTGATCTG ATACTAGAGA AGATAAAAAA 000480 000481 TGAATTAGCA AATTGTGAAC ACAATGAAAT GACTGACGTA GGTGTAGATT CCAACATTTT TCTGAAGGTG TCTTGACCAA 000560 000561 AAAAAAAAAA AAAAAAGGCA CGTGTGAAAC CTTTCCATTC TGTTCTTGAT GGCTTGGCTT TAATGGCATA TGATTATGTC 000640 000641 CACACTTATT CTTTCAGCTT TCTTAAAGAG AATATTCAGT TTTAAAGATC ATAGCCACTT GTTTTGAGAT TTATGTATTA 000720 000721 GCTTCGGAGA TCAGAACATA AGAATTTGGG GTATGCAAGT CAACTCCCTC ACTTTCTTTT AAAAATCCTG GGAAATCCAT 000800 000801 TATACCTTCT GTGCCTGATT TTCTTCCTTT GCAAGTGGGT TGCTTGGCGT CCAGCTCAGC CACTAATGCA AGTCACCACA 000880 000881 ACAGGTACGT CTTCAAATAC CATCTCAGCA GGCTGGGAGC CAAATGAAGA AAATGAAGAT GAAAGAGACA GACACCTCAG 000960 000961 TTTTTCTGGA TCAGGCATTG ATGATGATGA AGATTTTATC TCCAGCACCA GTAAGAATAA TCAATTACAG TACAGCCATT 001040 001041 TATGCAAGGC TTATTGATTA ATCTGAGTGA TACCAAATTG TATCTCTCTT GAGAAGTAGT TAATGTGAAA AATGGGTGAA 001120 001121 CCTATGATCA TACCTTAGTT ATATCTTGAT GAGATTATGG AAGAAGAAAT AGAATGTTTT GAGAAGTGGG GAAAATATCT 001200 001201 CACAAAATTT CTCTTGTCTC ATGTTCTTCC TGTTTTATTT ATCTATGGGA TCTACTGCTA CAGATTGTCT TTGAATGATC 001280 001281 AGGCTTTATC AGAGAATGAC ATTAAAACAG TAcaaaaaa |
Predicted Small Protein
| Name | NONHSAT018780_smProtein_923:1060 |
| Length | 46 |
| Molecular weight | 5208.3184 |
| Aromaticity | 0.0666666666667 |
| Instability index | 49.9066666667 |
| Isoelectric point | 9.60040283203 |
| Runs | 7 |
| Runs residual | 0.00669191919192 |
| Runs probability | 0.0719837484544 |
| Amino acid sequence | MKKMKMKETDTSVFLDQALMMMKILSPAPVRIINYSTAIYARLID |
| Secondary structure | LLLLLLLLLLLHHHHHHHHHHHHHLLLLLEEEELLLHHHHHHHLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooo |
