Difference between revisions of "NONHSAT021253"

Latest revision as of 20:32, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT021253
Source	NONCODE4.0
Same with	,
Classification	sense
Length	1917 nt
Genomic location	chr11-:47491883..47574688
Exon number	2
Exons	47491883..47493654,47574544..47574688
Genome context
Sequence	000001 TGGGGTGTTC TGCTCTggcg gcagcggcag cggcggcggg acgcggaggc tcccccggga ttcggcctca gcagcgaggc 000080 000081 ggcggcggcg gctgcggagg cgcaggcagc aactgaggca gcggcagGCT CAGGTGCAGC CGCTGGCACA GCTTGCCCTG 000160 000161 AAGACTCGGC TACTGCCTTC TGTGGGAGTT TCGCTTCGTA CAGAGGACAA GTTTGTGCTT TGGTTTCCAG TGTTTTACTT 000240 000241 TGGAGTTTAG GTGCCATATC CTGAGGTTTt ttttgttttt gtttttgttt CTCCTTTATT TAAAGTTTGC TGTGTTTGTA 000320 000321 ACCAGTGTGT GTTGAGAAGG ACCAACACCA AACCACCCTG GGGAAGGGGG ACAGGGAAAC ATTTAACACA GACGATGATC 000400 000401 AGGATTTGCC CCAAACCACC CCAAGAGAGA GGACTGAGTG GAACAAAAAA GTGACCCCCA GAACCTCTCT TAGTGTGAGG 000480 000481 GTGGGTAGAA TGAGAACTGA CACCTGGGAG CTGTGGGGAG CAGAGCGGCT TTGGGGAAGA GTGGAGTGAC TAGACACCTA 000560 000561 ATGCCCTGGC AGCTGGAGAC TCAAACTCCT GTACAGCTAC CTTCTGGGAA ATAGTTTTTG ACACCTATTT TTCAGATTCT 000640 000641 TGTCCGGAAT TTCTGCTGCT CTTTTCAAAA AAGGGCATTA ACAATTCTCT GGAAATAAAG CACCTGTTAG CCTGACATAT 000720 000721 GCAAAAAGCA GGGCGGCATC ACCCATTACG AGCTCCCCCA GCCAGCAGTC AGTATTGGAT TGGCCTTGCC TGGCTGGTGG 000800 000801 CAGTTTGGGA GAAACAGCCA AAGAGGTTAG TTTATTTCAA CACCAAATTA GACCATGGCC CATTTCCAAC GGGTCTCTTT 000880 000881 AAAGGCCTCT ATGGAATACA TTGCCTGGTT TCCTTCTTTG CAGTTCACCA CAGCAAGGAA TGTCACCTCC ATCCCAAGCC 000960 000961 ACCATTTTCT CATGAAGGCA AATCCAAGAA GGGCTTGCAG TTCTTGCTGA AGGGGGTACC ATTTGTGGGC AGAGTGATCA 001040 001041 ATACCATCTA GTTGGGGGAG GAGGAGCTTA TTTCTTGGTG TACTTGAATC AGAAGGTCCC TGCAAGCCAG TATGCTTCAT 001120 001121 TTGCCAGTGG CCAGAAATTC TCCCTTGCCT CCTTGATTGA GGTGTCCCAG ATGTAGTATT CCCACAGGGG TCTGGCAGGC 001200 001201 CCCTCCTGTA ACCACTCCAG TCACATTTTC TGCTCTTGAG GCAGAGGTGA CATCAGGACG TTTACAGCCT CCACATGAAT 001280 001281 TGAGTGTTCA TTTACCTCAG TATTACCGTG TTCATTTTTG TCCTCGTGCT ACAGTTAGCT CCCTGCCGCC TCTTGCAGGT 001360 001361 CTTACTTCAG CTCTTGCCTG TGACCCACAC AGCTTCTGGG CTCTGCCTCT GCTCTAAGAA GTGCTGTGGG GGTAGAGAAC 001440 001441 CAGGAAGGAC ATGCTGTTGG GAATGTACAC CTGGGCAGAG GTGGCCCTGT TAAGATGTGA CTGTAGCCAC AGCCAGGGAT 001520 001521 GGGATCCCTG GGTCTCTGGA ATCTGAAACC TCAACAAATA CCAGTCTTGA CCCCTAGCAG CAGAGATAAG AATAAAGGGG 001600 001601 TTGGTTTGCT ATTAAGTCAG ATGGGGGCTC TCTCCTTGTC ATGCTGTCCC TGTGGGTAAC AGACAGGGAT TGACCATCTT 001680 001681 ACTGTTGTAC AGGTAGCTGG TGGTGTTGGA TTATCCCATT GAAGCTGGGA CAGCTGTTCC TTTCTCATAG TGATAACTTG 001760 001761 GGTCTGTTGT CCTCTAAGGA ACGTGAAACA TACACTTCTT AAGCTGAACC ACGTAAACTT GAAATTCTGC GCACTGGGAG 001840 001841 AAATGTGTCC TGTGTTTCAA AGGATAAAAC TGTTCTAAAG GCTTCCAGGG TCATGATGGG ATTTTTTAAA TAAATGC

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Predicted Small Protein

Name	`NONHSAT021253_smProtein_854:1009`
Length	`52`
Molecular weight	`5856.7661`
Aromaticity	`0.117647058824`
Instability index	`49.2333333333`
Isoelectric point	`10.3101196289`
Runs	`9`
Runs residual	`0.0222286934576`
Runs probability	`0.0266737325561`
Amino acid sequence	`MAHFQRVSLKASMEYIAWFPSLQFTTARNVTSIPSHHFLMKANPRRACSSC`
Secondary structure	`LLLLEEELHHHHHHHHHHLLLLLLLLLLLLLLLLLHHHHHLLLLHHHLLLL`
PRMN	`-`
PiMo	`-`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>TGGGGTGTTCTGCTCTggcggcagcggcagcggcggcgggacgcggaggctcccccgggattcggcctcagcagcgaggcggcggcggcggctgcggaggcgcaggcagcaactgaggcagcggcagGCTCAGGTGCAGCCGCTGGCACAGCTTGCCCTGAAGACTCGGCTACTGCCTTCTGTGGGAGTTTCGCTTCGTACAGAGGACAAGTTTGTGCTTTGGTTTCCAGTGTTTTACTTTGGAGTTTAGGTGCCATATCCTGAGGTTTtttttgtttttgtttttgtttCTCCTTTATTTAAAGTTTGCTGTGTTTGTAACCAGTGTGTGTTGAGAAGGACCAACACCAAACCACCCTGGGGAAGGGGGACAGGGAAACATTTAACACAGACGATGATCAGGATTTGCCCCAAACCACCCCAAGAGAGAGGACTGAGTGGAACAAAAAAGTGACCCCCAGAACCTCTCTTAGTGTGAGGGTGGGTAGAATGAGAACTGACACCTGGGAGCTGTGGGGAGCAGAGCGGCTTTGGGGAAGAGTGGAGTGACTAGACACCTAATGCCCTGGCAGCTGGAGACTCAAACTCCTGTACAGCTACCTTCTGGGAAATAGTTTTTGACACCTATTTTTCAGATTCTTGTCCGGAATTTCTGCTGCTCTTTTCAAAAAAGGGCATTAACAATTCTCTGGAAATAAAGCACCTGTTAGCCTGACATATGCAAAAAGCAGGGCGGCATCACCCATTACGAGCTCCCCCAGCCAGCAGTCAGTATTGGATTGGCCTTGCCTGGCTGGTGGCAGTTTGGGAGAAACAGCCAAAGAGGTTAGTTTATTTCAACACCAAATTAGACCATGGCCCATTTCCAACGGGTCTCTTTAAAGGCCTCTATGGAATACATTGCCTGGTTTCCTTCTTTGCAGTTCACCACAGCAAGGAATGTCACCTCCATCCCAAGCCACCATTTTCTCATGAAGGCAAATCCAAGAAGGGCTTGCAGTTCTTGCTGAAGGGGGTACCATTTGTGGGCAGAGTGATCAATACCATCTAGTTGGGGGAGGAGGAGCTTATTTCTTGGTGTACTTGAATCAGAAGGTCCCTGCAAGCCAGTATGCTTCATTTGCCAGTGGCCAGAAATTCTCCCTTGCCTCCTTGATTGAGGTGTCCCAGATGTAGTATTCCCACAGGGGTCTGGCAGGCCCCTCCTGTAACCACTCCAGTCACATTTTCTGCTCTTGAGGCAGAGGTGACATCAGGACGTTTACAGCCTCCACATGAATTGAGTGTTCATTTACCTCAGTATTACCGTGTTCATTTTTGTCCTCGTGCTACAGTTAGCTCCCTGCCGCCTCTTGCAGGTCTTACTTCAGCTCTTGCCTGTGACCCACACAGCTTCTGGGCTCTGCCTCTGCTCTAAGAAGTGCTGTGGGGGTAGAGAACCAGGAAGGACATGCTGTTGGGAATGTACACCTGGGCAGAGGTGGCCCTGTTAAGATGTGACTGTAGCCACAGCCAGGGATGGGATCCCTGGGTCTCTGGAATCTGAAACCTCAACAAATACCAGTCTTGACCCCTAGCAGCAGAGATAAGAATAAAGGGGTTGGTTTGCTATTAAGTCAGATGGGGGCTCTCTCCTTGTCATGCTGTCCCTGTGGGTAACAGACAGGGATTGACCATCTTACTGTTGTACAGGTAGCTGGTGGTGTTGGATTATCCCATTGAAGCTGGGACAGCTGTTCCTTTCTCATAGTGATAACTTGGGTCTGTTGTCCTCTAAGGAACGTGAAACATACACTTCTTAAGCTGAACCACGTAAACTTGAAATTCTGCGCACTGGGAGAAATGTGTCCTGTGTTTCAAAGGATAAAACTGTTCTAAAGGCTTCCAGGGTCATGATGGGATTTTTTAAATAAATGC</dnaseq>|
 }}
-[[Category:Sense]]
+[[Category:Sense]][[Category:NONHSAG008243]][[Category:Transcripts]]