Difference between revisions of "NONHSAT023862"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AAACAGTACTACTATCATTTCTTGGGAGGAGCTTGAAGAAGTAAAATAAGTGTTTAGTAGAATGGATATTCACAATAGTGGGTAAGTCCGTGACTATGAACTTCAAGACCTATTTAAGGTTAAGCAAGCCTTCCTATGCCTGGCTACAAGGTATAAGAGAAAATTCTAGCAGTTGCTGACAACAACCAAGATGGCAAAATCAGTTTGAAAAATTTGTGTTACTGATGCAATAATTAAAAAGGAAAGACTGTAGTCTTATACATGAAGCATCTTATACCCATGAACCTCAATGATGGCAGTATCTTCAAGTTACTTGCAGATCTCATCCTTCTTTGCAAAATGATCAATTTATTTGAACCAGATACAACTGATGAAAGAGCCATTAATAAAAAGCTCGCCGCTTTCACTCTTTCTGAAAATTTAAACCTAACCCAAAGTCTGTCTCGACCATTAGTTGTACAGTGGTCAACATCAGTGCACAGAATCTCAAAGAAGGAAAACCTCACTTGGTCTTAGGACTTCTCTGGCAGATCATCTAAGTTGGTCTTTTTGATGATATTGAGATTTCtaggaatgaagctctgattgcattgctaaatgaaggtgaggaactagagatgctgatgtagctttctcctgaggaattactgctgtaatgggTGAATCATCATCTGGCTGATGCAGGATGGTGTACCATCAACAACTTCAGCCAAGGCAGTAAGGATTCAAGAGCCTATTTTCATCTGCTTACACAAATTGACCCTAAAGGTGACTGGGAATATGGACTTTTCAGTCCATCTTCAGGATTTCATAAGAAAAATGATTTGAAGTGTGCTGGACTTATGCTTCAAGAAGTAGATAAACTTGGCTGCAGTTTGTTACTCCTGCAGATGTGGTTTCAGGCCATCCTAAACTTAATTTAGCTTTCATAGTTAATCTGTTTAATATCTATCCATGCCTACACAAGTTAGATAATAATGACATCAATATAAACTTATTGGAGGGAGAGAGCAAAGAAGAGAGGACATTTCAGAACTGGTGCATTCCTTAGGAATCAACCCATATATTAATCATTTGTAGTTACCTTGCAGATGCTTTAGCAATCTTTCAGCTCTATGATACAATCTGAGTGTCAGTCAACTGGAGCCATGTCAACAAACCTCCTTATCCTGCCCTTGGAGGGAACATAAACATTGATAACTAACTATACAGTGGAACTTGGGAAGAATAAGGCCAAATTCTTCTTCGTTGGCATTGCTGGGCAGGACCTAAATGAAGGGAATTCAACATTTATTCTGGCATTGGTTATGGCAGCTGATGAGAGGGTACACACTGAATATGAACAAAACCAAATTCTCCTTCGTTGGCATTGCTTGGCAGGACCTAAATGAAGAGAATTCAACATTTATTCTGGCATTGGTTATGGCAGCTGATGAGAAGGTACACATTGAATATGTTATCAGATCTTGGAAAGGTTGAAAGTGCACTTTTAAAAGTACAAATAAAAATACTTTTATTTCCAGCTTCAAGATATGCCACTTCAGTTGGTTGTGAGATCAGTGCCCAGATATATGCATTGCGTGTTGACCTTGTGGAAGCGAAACCAAAAATGGTTATGTCAGTGTTTTCTTGTTTAATGGGAAAAGGACTGAACAGAATAAAA</dnaseq>| | sequence = <dnaseq>AAACAGTACTACTATCATTTCTTGGGAGGAGCTTGAAGAAGTAAAATAAGTGTTTAGTAGAATGGATATTCACAATAGTGGGTAAGTCCGTGACTATGAACTTCAAGACCTATTTAAGGTTAAGCAAGCCTTCCTATGCCTGGCTACAAGGTATAAGAGAAAATTCTAGCAGTTGCTGACAACAACCAAGATGGCAAAATCAGTTTGAAAAATTTGTGTTACTGATGCAATAATTAAAAAGGAAAGACTGTAGTCTTATACATGAAGCATCTTATACCCATGAACCTCAATGATGGCAGTATCTTCAAGTTACTTGCAGATCTCATCCTTCTTTGCAAAATGATCAATTTATTTGAACCAGATACAACTGATGAAAGAGCCATTAATAAAAAGCTCGCCGCTTTCACTCTTTCTGAAAATTTAAACCTAACCCAAAGTCTGTCTCGACCATTAGTTGTACAGTGGTCAACATCAGTGCACAGAATCTCAAAGAAGGAAAACCTCACTTGGTCTTAGGACTTCTCTGGCAGATCATCTAAGTTGGTCTTTTTGATGATATTGAGATTTCtaggaatgaagctctgattgcattgctaaatgaaggtgaggaactagagatgctgatgtagctttctcctgaggaattactgctgtaatgggTGAATCATCATCTGGCTGATGCAGGATGGTGTACCATCAACAACTTCAGCCAAGGCAGTAAGGATTCAAGAGCCTATTTTCATCTGCTTACACAAATTGACCCTAAAGGTGACTGGGAATATGGACTTTTCAGTCCATCTTCAGGATTTCATAAGAAAAATGATTTGAAGTGTGCTGGACTTATGCTTCAAGAAGTAGATAAACTTGGCTGCAGTTTGTTACTCCTGCAGATGTGGTTTCAGGCCATCCTAAACTTAATTTAGCTTTCATAGTTAATCTGTTTAATATCTATCCATGCCTACACAAGTTAGATAATAATGACATCAATATAAACTTATTGGAGGGAGAGAGCAAAGAAGAGAGGACATTTCAGAACTGGTGCATTCCTTAGGAATCAACCCATATATTAATCATTTGTAGTTACCTTGCAGATGCTTTAGCAATCTTTCAGCTCTATGATACAATCTGAGTGTCAGTCAACTGGAGCCATGTCAACAAACCTCCTTATCCTGCCCTTGGAGGGAACATAAACATTGATAACTAACTATACAGTGGAACTTGGGAAGAATAAGGCCAAATTCTTCTTCGTTGGCATTGCTGGGCAGGACCTAAATGAAGGGAATTCAACATTTATTCTGGCATTGGTTATGGCAGCTGATGAGAGGGTACACACTGAATATGAACAAAACCAAATTCTCCTTCGTTGGCATTGCTTGGCAGGACCTAAATGAAGAGAATTCAACATTTATTCTGGCATTGGTTATGGCAGCTGATGAGAAGGTACACATTGAATATGTTATCAGATCTTGGAAAGGTTGAAAGTGCACTTTTAAAAGTACAAATAAAAATACTTTTATTTCCAGCTTCAAGATATGCCACTTCAGTTGGTTGTGAGATCAGTGCCCAGATATATGCATTGCGTGTTGACCTTGTGGAAGCGAAACCAAAAATGGTTATGTCAGTGTTTTCTTGTTTAATGGGAAAAGGACTGAACAGAATAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG009463]][[Category:Transcripts]] |
Latest revision as of 20:43, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT023862 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1663 nt |
Genomic location |
chr11-:101636666..101640692 |
Exon number |
2 |
Exons |
101636666..101637899,101640264..101640692 |
Genome context |
|
Sequence |
000001 AAACAGTACT ACTATCATTT CTTGGGAGGA GCTTGAAGAA GTAAAATAAG TGTTTAGTAG AATGGATATT CACAATAGTG 000080
000081 GGTAAGTCCG TGACTATGAA CTTCAAGACC TATTTAAGGT TAAGCAAGCC TTCCTATGCC TGGCTACAAG GTATAAGAGA 000160 000161 AAATTCTAGC AGTTGCTGAC AACAACCAAG ATGGCAAAAT CAGTTTGAAA AATTTGTGTT ACTGATGCAA TAATTAAAAA 000240 000241 GGAAAGACTG TAGTCTTATA CATGAAGCAT CTTATACCCA TGAACCTCAA TGATGGCAGT ATCTTCAAGT TACTTGCAGA 000320 000321 TCTCATCCTT CTTTGCAAAA TGATCAATTT ATTTGAACCA GATACAACTG ATGAAAGAGC CATTAATAAA AAGCTCGCCG 000400 000401 CTTTCACTCT TTCTGAAAAT TTAAACCTAA CCCAAAGTCT GTCTCGACCA TTAGTTGTAC AGTGGTCAAC ATCAGTGCAC 000480 000481 AGAATCTCAA AGAAGGAAAA CCTCACTTGG TCTTAGGACT TCTCTGGCAG ATCATCTAAG TTGGTCTTTT TGATGATATT 000560 000561 GAGATTTCta ggaatgaagc tctgattgca ttgctaaatg aaggtgagga actagagatg ctgatgtagc tttctcctga 000640 000641 ggaattactg ctgtaatggg TGAATCATCA TCTGGCTGAT GCAGGATGGT GTACCATCAA CAACTTCAGC CAAGGCAGTA 000720 000721 AGGATTCAAG AGCCTATTTT CATCTGCTTA CACAAATTGA CCCTAAAGGT GACTGGGAAT ATGGACTTTT CAGTCCATCT 000800 000801 TCAGGATTTC ATAAGAAAAA TGATTTGAAG TGTGCTGGAC TTATGCTTCA AGAAGTAGAT AAACTTGGCT GCAGTTTGTT 000880 000881 ACTCCTGCAG ATGTGGTTTC AGGCCATCCT AAACTTAATT TAGCTTTCAT AGTTAATCTG TTTAATATCT ATCCATGCCT 000960 000961 ACACAAGTTA GATAATAATG ACATCAATAT AAACTTATTG GAGGGAGAGA GCAAAGAAGA GAGGACATTT CAGAACTGGT 001040 001041 GCATTCCTTA GGAATCAACC CATATATTAA TCATTTGTAG TTACCTTGCA GATGCTTTAG CAATCTTTCA GCTCTATGAT 001120 001121 ACAATCTGAG TGTCAGTCAA CTGGAGCCAT GTCAACAAAC CTCCTTATCC TGCCCTTGGA GGGAACATAA ACATTGATAA 001200 001201 CTAACTATAC AGTGGAACTT GGGAAGAATA AGGCCAAATT CTTCTTCGTT GGCATTGCTG GGCAGGACCT AAATGAAGGG 001280 001281 AATTCAACAT TTATTCTGGC ATTGGTTATG GCAGCTGATG AGAGGGTACA CACTGAATAT GAACAAAACC AAATTCTCCT 001360 001361 TCGTTGGCAT TGCTTGGCAG GACCTAAATG AAGAGAATTC AACATTTATT CTGGCATTGG TTATGGCAGC TGATGAGAAG 001440 001441 GTACACATTG AATATGTTAT CAGATCTTGG AAAGGTTGAA AGTGCACTTT TAAAAGTACA AATAAAAATA CTTTTATTTC 001520 001521 CAGCTTCAAG ATATGCCACT TCAGTTGGTT GTGAGATCAG TGCCCAGATA TATGCATTGC GTGTTGACCT TGTGGAAGCG 001600 001601 AAACCAAAAA TGGTTATGTC AGTGTTTTCT TGTTTAATGG GAAAAGGACT GAACAGAATA AAA |
Predicted Small Protein
Name | NONHSAT023862_smProtein_1532:1636 |
Length | 35 |
Molecular weight | 4190.1462 |
Aromaticity | 0.117647058824 |
Instability index | 91.0823529412 |
Isoelectric point | 9.89398193359 |
Runs | 6 |
Runs residual | 0.00967982129561 |
Runs probability | 0.00930342106813 |
Amino acid sequence | MPLQLVVRSVPRYMHCVLTLWKRNQKWLCQCFLV |
Secondary structure | LLEEEEEELLLHHHHHHHHHHHHHHHHHHHHEEL |
PRMN | - |
PiMo | - |