Difference between revisions of "NONHSAT023916"

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sequence = <dnaseq>GATGGATATTATGCCAAATTGCAATGCCAGACTTTACAATGTAAAATGGAAATGTTATATATATATTTTCTAGCTACCATTTCAGAGCATTTGGAAGCTGAATTACTTTCTTATTGAAAATGACTTAAGTCTTTAATTGACTTATAAGTGTGTGTGTATTTATATGTTCATATTTCCCCCCCTCTAGAACTGGGTAGATAAAGCTGAAAAACAGGCTCTTCTCTCTGAAACACTTGACCTATCAGAACTTTTCCATCCAGACACATTTCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAGTGGGTCGTTCTGTGGATAGCCTTAAATTTGTAGCCTCATGGAAAGGTCGACTGCAAGAAGCAAAGCTACAAATTAAGATCAGTGGCTTGTTACTAGAAGGATGTAGTTTTGATGGAAATCAACTTTCTGAAAATCAGCTTGATTCTCCCAGCGTGTCATCAGTGCTCCCTTGTTTTATGGGCTGGATTCCACAGGATGCATGTGGTCCATATTCTCCGGATGAGTGCATCTCTTTGCCTGTTTACACAAGTGCTGAAAGGGATCGTGTGGTTACCAATATTGATGTTCCATGTGGGGGCAACCAAGACCAGTGGATTCAGTGTGGAGCAGCTCTATTCCTAAAAAATCAGTAGAATCTAATGACAACAAAAGCCATCTTCACAAAAGGGAACATTGATTCTTTAAGCTTTAAATCAAACATGTGGTCAGTCTACATTTGAAATGTTAGTTCAAAATATTAACATATAGTTATGTTGTTGATGTCACTGAAATTTTAATGTGTAAAAGCAGCACTGTGCATCTTTTAAAGTAATAAAT</dnaseq>|
 
sequence = <dnaseq>GATGGATATTATGCCAAATTGCAATGCCAGACTTTACAATGTAAAATGGAAATGTTATATATATATTTTCTAGCTACCATTTCAGAGCATTTGGAAGCTGAATTACTTTCTTATTGAAAATGACTTAAGTCTTTAATTGACTTATAAGTGTGTGTGTATTTATATGTTCATATTTCCCCCCCTCTAGAACTGGGTAGATAAAGCTGAAAAACAGGCTCTTCTCTCTGAAACACTTGACCTATCAGAACTTTTCCATCCAGACACATTTCTTAATGCTCTTCGCCAGGAAACTGCAAGGGCAGTGGGTCGTTCTGTGGATAGCCTTAAATTTGTAGCCTCATGGAAAGGTCGACTGCAAGAAGCAAAGCTACAAATTAAGATCAGTGGCTTGTTACTAGAAGGATGTAGTTTTGATGGAAATCAACTTTCTGAAAATCAGCTTGATTCTCCCAGCGTGTCATCAGTGCTCCCTTGTTTTATGGGCTGGATTCCACAGGATGCATGTGGTCCATATTCTCCGGATGAGTGCATCTCTTTGCCTGTTTACACAAGTGCTGAAAGGGATCGTGTGGTTACCAATATTGATGTTCCATGTGGGGGCAACCAAGACCAGTGGATTCAGTGTGGAGCAGCTCTATTCCTAAAAAATCAGTAGAATCTAATGACAACAAAAGCCATCTTCACAAAAGGGAACATTGATTCTTTAAGCTTTAAATCAAACATGTGGTCAGTCTACATTTGAAATGTTAGTTCAAAATATTAACATATAGTTATGTTGTTGATGTCACTGAAATTTTAATGTGTAAAAGCAGCACTGTGCATCTTTTAAAGTAATAAAT</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG009497]][[Category:Transcripts]]

Latest revision as of 20:43, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT023916

Source

NONCODE4.0

Same with

,

Classification

sense

Length

839 nt

Genomic location

chr11+:103325727..103350165

Exon number

4

Exons

103325727..103326023,103327003..103327084,103339317..103339433,103349823..103350165

Genome context

Sequence
000001 GATGGATATT ATGCCAAATT GCAATGCCAG ACTTTACAAT GTAAAATGGA AATGTTATAT ATATATTTTC TAGCTACCAT 000080
000081 TTCAGAGCAT TTGGAAGCTG AATTACTTTC TTATTGAAAA TGACTTAAGT CTTTAATTGA CTTATAAGTG TGTGTGTATT 000160
000161 TATATGTTCA TATTTCCCCC CCTCTAGAAC TGGGTAGATA AAGCTGAAAA ACAGGCTCTT CTCTCTGAAA CACTTGACCT 000240
000241 ATCAGAACTT TTCCATCCAG ACACATTTCT TAATGCTCTT CGCCAGGAAA CTGCAAGGGC AGTGGGTCGT TCTGTGGATA 000320
000321 GCCTTAAATT TGTAGCCTCA TGGAAAGGTC GACTGCAAGA AGCAAAGCTA CAAATTAAGA TCAGTGGCTT GTTACTAGAA 000400
000401 GGATGTAGTT TTGATGGAAA TCAACTTTCT GAAAATCAGC TTGATTCTCC CAGCGTGTCA TCAGTGCTCC CTTGTTTTAT 000480
000481 GGGCTGGATT CCACAGGATG CATGTGGTCC ATATTCTCCG GATGAGTGCA TCTCTTTGCC TGTTTACACA AGTGCTGAAA 000560
000561 GGGATCGTGT GGTTACCAAT ATTGATGTTC CATGTGGGGG CAACCAAGAC CAGTGGATTC AGTGTGGAGC AGCTCTATTC 000640
000641 CTAAAAAATC AGTAGAATCT AATGACAACA AAAGCCATCT TCACAAAAGG GAACATTGAT TCTTTAAGCT TTAAATCAAA 000720
000721 CATGTGGTCA GTCTACATTT GAAATGTTAG TTCAAAATAT TAACATATAG TTATGTTGTT GATGTCACTG AAATTTTAAT 000800
000801 GTGTAAAAGC AGCACTGTGC ATCTTTTAAA GTAATAAAT
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Predicted Small Protein

Name NONHSAT023916_smProtein_413:643
Length 77
Molecular weight 8613.3468
Aromaticity 0.105263157895
Instability index 53.2526315789
Isoelectric point 9.05816650391
Runs 8
Runs residual 0.036146400484
Runs probability 0.0435545839957
Amino acid sequence MEINFLKISLILPACHQCSLVLWAGFHRMHVVHILRMSASLCLFTQVLKGIVWLPILMFH
VGATKTSGFSVEQLYS
Secondary structure LEEEEEEEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
LLLLLLLLLEEEEEEL
PRMN LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHH
HLLLLLLLLLLLLLLL
PiMo oooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTTTT
Tooooooooooooooo