Difference between revisions of "NONHSAT030969"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>ATAGAGCCCAGTTCCTGTTTTTTTGTTCGTTTTTTTTTTTTTTTTTTTTTTAGCCGCCTTCATTTGGATACTGGGGACTTCTTTTCCACTTCTTCTTCTTCTTCTATTTTATTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGAGCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCTCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTTACCATGTTGGCCAGAGTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGAGCTCAGCCTCCACTTCTTATTTTGATTCTTTTCTGTTTTGATGGTGAGAGGAAAGGGTGATTTACCCAATACTGTCACAGAAAAATGAAACTGTGACTGGTTTTCACAATGTATGTAGCTGATCTCATGTTCTCCTATTATTATGTTTCTGACAGTGATAAAATATCACTCTCCCTCCCTGGGGCATTAGAGGAGTCCTCACCCACCCACCTCCTACACAAGTATCTTTTAGGGACAGTGGCTCACCATTGTGGACTTTTTGAGTGTCCACCTGATATTACAAGTTGCATTGACCAGAACACAGATTTTGCTCTTCTGTGTCAATACCCATTTCTTTTCTGAAGGTCAGAAGTTGGTTAAGGGTTTGGGGGACCAGCTAGACACTCTTCTTAGTCCCATGGAGCTGACTGGAAGTTCCATGAGGGGAGGAAATTGATGTCAAAGTGTCATTTTAAAGCTTAAGCTGAAAGTTTATTTTTTAAATTCTCATTCATTCATTTAGCATATATTGATTGAGCATCTACAATGTGCCAGTTGTAGAATTCCATCTCAGAAGAGACTTGACTTGTGGATGGTGGAGGGGCAGTCCTGCTCGGAAGCAGATGATGTGAAATGTTCCTTTCCAGTCTGGTTCACGATGTTTAACAGATTTGTCAGGTCACCACTGTGACCCCAAGCTTTGCTGGCAGATTGTTATATAGTATTTACTGAGAGCCCTGCTATCTGGTAAAGGCAGTTAAAAAGCCTGCAATCTCGACTCATTTCCAGCATGAACAGACTGGTCCTTGCTGCTTTACACAATAATCAAAGCTACCTTTTATGGCGTGCTCGCCACTCCCAAGCACTGGGCGAAGTGCTTTACCCGTCTTCCCCTCCGCGATGCCTCATGCCCACTTTAGCAGATAGTACTGTTAGCATTCCCATTTTACAGTGGAGGAAGCTGAGGCTCAGAGAGGTTAAGCAACTTGGCTGAAGGCCACACCACCAGCGAAGTGCCTGAGCCAAGATTTGGACTCGAGTCCATGGGACCCCCACGCTCGTGAGCTGACTGCTCTGCTCCACTGGGTCCCTTCATGAGGTCGTCCCACAGCACTGCTAGTTCCAGGGCGAGTGCCAGCACATGGCCCCACTGGGAGCCGGGGCCTGACTTAGGTCTACTGGAAAAAGTGTCACCTTTGGGGACACTCAAGGACAGGCTGGTTGGTTTCGTTGTGGATTTTATATACTCATGCCCTAACCCTGTGTTCCTGGTTTCTATAAGGCCCCGGGGAAGGTGCAAGGAATTTGCAAATAGGGCCTGTATGACTTATTTCCTAGGACACGGGAAGCTTTTCTTACCTCCTTTCTACCCTCTTCTCCAACCTGAACTCCCAAGTTTCTTCTCCTGAAGGTCTTTGCACTATAAGCGCCAAGGAGCCCGTGTGCGTGGCAGGGGCGGCTGGGAGGGTATCTGGAGAACCTTAGTGAGGCCTCTGGCCTAGCCAGAGAGGCAATAAGCTTGGGGACGTTCCGTTCTGGGTTCTGACGTTGTTGGTTCTGACGTCGTTGTGCTCTTTTGTAAGAGGAATTTCATACCTTGGAGACGCTTTGTACATATTTGTAATGACTTTATTAAAAAACTGATTGTGCACTTCT</dnaseq>|
 
sequence = <dnaseq>ATAGAGCCCAGTTCCTGTTTTTTTGTTCGTTTTTTTTTTTTTTTTTTTTTTAGCCGCCTTCATTTGGATACTGGGGACTTCTTTTCCACTTCTTCTTCTTCTTCTATTTTATTTTGAGACAGAGTCTCACTCTGTCACCCAGGCTGGAGTGCAGTGGTGCGAGCTCAGCTCACTGCAACCTCCACCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCACCACCACGCTCGGCTAATTTTTGTATTTTTAGTGGAGATGGGGTTTTACCATGTTGGCCAGAGTGGTTTTGAACTCCTGGCCTCAAGTGATCCACCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGAGCTCAGCCTCCACTTCTTATTTTGATTCTTTTCTGTTTTGATGGTGAGAGGAAAGGGTGATTTACCCAATACTGTCACAGAAAAATGAAACTGTGACTGGTTTTCACAATGTATGTAGCTGATCTCATGTTCTCCTATTATTATGTTTCTGACAGTGATAAAATATCACTCTCCCTCCCTGGGGCATTAGAGGAGTCCTCACCCACCCACCTCCTACACAAGTATCTTTTAGGGACAGTGGCTCACCATTGTGGACTTTTTGAGTGTCCACCTGATATTACAAGTTGCATTGACCAGAACACAGATTTTGCTCTTCTGTGTCAATACCCATTTCTTTTCTGAAGGTCAGAAGTTGGTTAAGGGTTTGGGGGACCAGCTAGACACTCTTCTTAGTCCCATGGAGCTGACTGGAAGTTCCATGAGGGGAGGAAATTGATGTCAAAGTGTCATTTTAAAGCTTAAGCTGAAAGTTTATTTTTTAAATTCTCATTCATTCATTTAGCATATATTGATTGAGCATCTACAATGTGCCAGTTGTAGAATTCCATCTCAGAAGAGACTTGACTTGTGGATGGTGGAGGGGCAGTCCTGCTCGGAAGCAGATGATGTGAAATGTTCCTTTCCAGTCTGGTTCACGATGTTTAACAGATTTGTCAGGTCACCACTGTGACCCCAAGCTTTGCTGGCAGATTGTTATATAGTATTTACTGAGAGCCCTGCTATCTGGTAAAGGCAGTTAAAAAGCCTGCAATCTCGACTCATTTCCAGCATGAACAGACTGGTCCTTGCTGCTTTACACAATAATCAAAGCTACCTTTTATGGCGTGCTCGCCACTCCCAAGCACTGGGCGAAGTGCTTTACCCGTCTTCCCCTCCGCGATGCCTCATGCCCACTTTAGCAGATAGTACTGTTAGCATTCCCATTTTACAGTGGAGGAAGCTGAGGCTCAGAGAGGTTAAGCAACTTGGCTGAAGGCCACACCACCAGCGAAGTGCCTGAGCCAAGATTTGGACTCGAGTCCATGGGACCCCCACGCTCGTGAGCTGACTGCTCTGCTCCACTGGGTCCCTTCATGAGGTCGTCCCACAGCACTGCTAGTTCCAGGGCGAGTGCCAGCACATGGCCCCACTGGGAGCCGGGGCCTGACTTAGGTCTACTGGAAAAAGTGTCACCTTTGGGGACACTCAAGGACAGGCTGGTTGGTTTCGTTGTGGATTTTATATACTCATGCCCTAACCCTGTGTTCCTGGTTTCTATAAGGCCCCGGGGAAGGTGCAAGGAATTTGCAAATAGGGCCTGTATGACTTATTTCCTAGGACACGGGAAGCTTTTCTTACCTCCTTTCTACCCTCTTCTCCAACCTGAACTCCCAAGTTTCTTCTCCTGAAGGTCTTTGCACTATAAGCGCCAAGGAGCCCGTGTGCGTGGCAGGGGCGGCTGGGAGGGTATCTGGAGAACCTTAGTGAGGCCTCTGGCCTAGCCAGAGAGGCAATAAGCTTGGGGACGTTCCGTTCTGGGTTCTGACGTTGTTGGTTCTGACGTCGTTGTGCTCTTTTGTAAGAGGAATTTCATACCTTGGAGACGCTTTGTACATATTTGTAATGACTTTATTAAAAAACTGATTGTGCACTTCT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG012433]][[Category:Transcripts]]

Latest revision as of 21:12, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT030969

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2024 nt

Genomic location

chr12-:117293950..117295968

Exon number

1

Exons

117293950..117295968

Genome context

Sequence
000001 ATAGAGCCCA GTTCCTGTTT TTTTGTTCGT TTTTTTTTTT TTTTTTTTTT TAGCCGCCTT CATTTGGATA CTGGGGACTT 000080
000081 CTTTTCCACT TCTTCTTCTT CTTCTATTTT ATTTTGAGAC AGAGTCTCAC TCTGTCACCC AGGCTGGAGT GCAGTGGTGC 000160
000161 GAGCTCAGCT CACTGCAACC TCCACCTCCC AGGTTCAAGC GATTCTCCTG CCTCAGCCTC CTGAGTAGCT GGGATTACAG 000240
000241 GCACCCACCA CCACGCTCGG CTAATTTTTG TATTTTTAGT GGAGATGGGG TTTTACCATG TTGGCCAGAG TGGTTTTGAA 000320
000321 CTCCTGGCCT CAAGTGATCC ACCTGCCTTG GCCTCCCAAA GTGCTGGGAT TACAGGCATG AGCCACCGAG CTCAGCCTCC 000400
000401 ACTTCTTATT TTGATTCTTT TCTGTTTTGA TGGTGAGAGG AAAGGGTGAT TTACCCAATA CTGTCACAGA AAAATGAAAC 000480
000481 TGTGACTGGT TTTCACAATG TATGTAGCTG ATCTCATGTT CTCCTATTAT TATGTTTCTG ACAGTGATAA AATATCACTC 000560
000561 TCCCTCCCTG GGGCATTAGA GGAGTCCTCA CCCACCCACC TCCTACACAA GTATCTTTTA GGGACAGTGG CTCACCATTG 000640
000641 TGGACTTTTT GAGTGTCCAC CTGATATTAC AAGTTGCATT GACCAGAACA CAGATTTTGC TCTTCTGTGT CAATACCCAT 000720
000721 TTCTTTTCTG AAGGTCAGAA GTTGGTTAAG GGTTTGGGGG ACCAGCTAGA CACTCTTCTT AGTCCCATGG AGCTGACTGG 000800
000801 AAGTTCCATG AGGGGAGGAA ATTGATGTCA AAGTGTCATT TTAAAGCTTA AGCTGAAAGT TTATTTTTTA AATTCTCATT 000880
000881 CATTCATTTA GCATATATTG ATTGAGCATC TACAATGTGC CAGTTGTAGA ATTCCATCTC AGAAGAGACT TGACTTGTGG 000960
000961 ATGGTGGAGG GGCAGTCCTG CTCGGAAGCA GATGATGTGA AATGTTCCTT TCCAGTCTGG TTCACGATGT TTAACAGATT 001040
001041 TGTCAGGTCA CCACTGTGAC CCCAAGCTTT GCTGGCAGAT TGTTATATAG TATTTACTGA GAGCCCTGCT ATCTGGTAAA 001120
001121 GGCAGTTAAA AAGCCTGCAA TCTCGACTCA TTTCCAGCAT GAACAGACTG GTCCTTGCTG CTTTACACAA TAATCAAAGC 001200
001201 TACCTTTTAT GGCGTGCTCG CCACTCCCAA GCACTGGGCG AAGTGCTTTA CCCGTCTTCC CCTCCGCGAT GCCTCATGCC 001280
001281 CACTTTAGCA GATAGTACTG TTAGCATTCC CATTTTACAG TGGAGGAAGC TGAGGCTCAG AGAGGTTAAG CAACTTGGCT 001360
001361 GAAGGCCACA CCACCAGCGA AGTGCCTGAG CCAAGATTTG GACTCGAGTC CATGGGACCC CCACGCTCGT GAGCTGACTG 001440
001441 CTCTGCTCCA CTGGGTCCCT TCATGAGGTC GTCCCACAGC ACTGCTAGTT CCAGGGCGAG TGCCAGCACA TGGCCCCACT 001520
001521 GGGAGCCGGG GCCTGACTTA GGTCTACTGG AAAAAGTGTC ACCTTTGGGG ACACTCAAGG ACAGGCTGGT TGGTTTCGTT 001600
001601 GTGGATTTTA TATACTCATG CCCTAACCCT GTGTTCCTGG TTTCTATAAG GCCCCGGGGA AGGTGCAAGG AATTTGCAAA 001680
001681 TAGGGCCTGT ATGACTTATT TCCTAGGACA CGGGAAGCTT TTCTTACCTC CTTTCTACCC TCTTCTCCAA CCTGAACTCC 001760
001761 CAAGTTTCTT CTCCTGAAGG TCTTTGCACT ATAAGCGCCA AGGAGCCCGT GTGCGTGGCA GGGGCGGCTG GGAGGGTATC 001840
001841 TGGAGAACCT TAGTGAGGCC TCTGGCCTAG CCAGAGAGGC AATAAGCTTG GGGACGTTCC GTTCTGGGTT CTGACGTTGT 001920
001921 TGGTTCTGAC GTCGTTGTGC TCTTTTGTAA GAGGAATTTC ATACCTTGGA GACGCTTTGT ACATATTTGT AATGACTTTA 002000
002001 TTAAAAAACT GATTGTGCAC TTCT
[back to top]

Predicted Small Protein

Name NONHSAT030969_smProtein_497:730
Length 78
Molecular weight 8697.8488
Aromaticity 0.142857142857
Instability index 46.5831168831
Isoelectric point 4.49066162109
Runs 11
Runs residual 0.00677583286279
Runs probability 0.0418653948066
Amino acid sequence MYVADLMFSYYYVSDSDKISLSLPGALEESSPTHLLHKYLLGTVAHHCGLFECPPDITSC
IDQNTDFALLCQYPFLF
Secondary structure LEEHHHHEEEEEEELLLEEEELLLLLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLL
LLLLLLHHHHHHLLLLL
PRMN -
PiMo -