Difference between revisions of "NONHSAT033544"

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sequence = <dnaseq>TAAGAGTAGGCAGGGACCAGTCCTACTTTCTGGCCGAGAAAACTGTACAGAAAGTAGACATTCAACTACCTCACGCAGGCTCATGGCTAAAACCAGTTTCACCAAGGGAAGATACAAGGAATTCTTCAGTCTGGGATAAAATGCACCGTCCAAATCTGGGGACACCAAGACAAGATTCCAGGAAAGCCGTGAGAAAGAGATCTAGTCCAGGCAGATTCAGAGTAGTAACTGGCTGAAAGACACTTTGCGTCCCTAAACTAATTCCTCGTCTGCAAACAGATACAACAATGACTCCTGCCTCTCAAAATGTGTGAAGCTCTAACGAGATAGCCGTAAAAGAACTTTAAGAGGCGCACGGAGCGGGATAGGCTCAAGTTACTTAAACTATACTTGTGTTAGGAGGAGCGCAAGTGGGAGACTCGCGAACATTACCTTGACTAGCCACACTCCTGTGTTCTGTTTGGCGCCGGTCAAGTCGAGTTCCCCGCGCTCGGCCATGGGTCTGCAGCCGGTGGAGGCGTGCGGGATGCAGCAGCGACCCCAGGAGCCGCAGGGCTGAGGAGCGGGCGTCCGGAACAAAGGACAAGCCGCGCTGAGAGGCGAAGAGCCGGCGTTCCTTACCTGCCAGAACACTGGGAACCGAGGAAAAGAGGAACACGCCGCCAGGAGCCGGGACTGCGCCTGCGCACTGCTACAATAAAGTTCAATCCTCCTGCTTCAACTGGGCcctctcaatttcatctcttt</dnaseq>|
 
sequence = <dnaseq>TAAGAGTAGGCAGGGACCAGTCCTACTTTCTGGCCGAGAAAACTGTACAGAAAGTAGACATTCAACTACCTCACGCAGGCTCATGGCTAAAACCAGTTTCACCAAGGGAAGATACAAGGAATTCTTCAGTCTGGGATAAAATGCACCGTCCAAATCTGGGGACACCAAGACAAGATTCCAGGAAAGCCGTGAGAAAGAGATCTAGTCCAGGCAGATTCAGAGTAGTAACTGGCTGAAAGACACTTTGCGTCCCTAAACTAATTCCTCGTCTGCAAACAGATACAACAATGACTCCTGCCTCTCAAAATGTGTGAAGCTCTAACGAGATAGCCGTAAAAGAACTTTAAGAGGCGCACGGAGCGGGATAGGCTCAAGTTACTTAAACTATACTTGTGTTAGGAGGAGCGCAAGTGGGAGACTCGCGAACATTACCTTGACTAGCCACACTCCTGTGTTCTGTTTGGCGCCGGTCAAGTCGAGTTCCCCGCGCTCGGCCATGGGTCTGCAGCCGGTGGAGGCGTGCGGGATGCAGCAGCGACCCCAGGAGCCGCAGGGCTGAGGAGCGGGCGTCCGGAACAAAGGACAAGCCGCGCTGAGAGGCGAAGAGCCGGCGTTCCTTACCTGCCAGAACACTGGGAACCGAGGAAAAGAGGAACACGCCGCCAGGAGCCGGGACTGCGCCTGCGCACTGCTACAATAAAGTTCAATCCTCCTGCTTCAACTGGGCcctctcaatttcatctcttt</dnaseq>|
 
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[[Category:Antisense]]
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[[Category:Antisense]][[Category:NONHSAG013404]][[Category:Transcripts]]

Latest revision as of 21:22, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT033544

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

747 nt

Genomic location

chr13-:45694000..45695288

Exon number

2

Exons

45694000..45694051,45694594..45695288

Genome context

Sequence
000001 TAAGAGTAGG CAGGGACCAG TCCTACTTTC TGGCCGAGAA AACTGTACAG AAAGTAGACA TTCAACTACC TCACGCAGGC 000080
000081 TCATGGCTAA AACCAGTTTC ACCAAGGGAA GATACAAGGA ATTCTTCAGT CTGGGATAAA ATGCACCGTC CAAATCTGGG 000160
000161 GACACCAAGA CAAGATTCCA GGAAAGCCGT GAGAAAGAGA TCTAGTCCAG GCAGATTCAG AGTAGTAACT GGCTGAAAGA 000240
000241 CACTTTGCGT CCCTAAACTA ATTCCTCGTC TGCAAACAGA TACAACAATG ACTCCTGCCT CTCAAAATGT GTGAAGCTCT 000320
000321 AACGAGATAG CCGTAAAAGA ACTTTAAGAG GCGCACGGAG CGGGATAGGC TCAAGTTACT TAAACTATAC TTGTGTTAGG 000400
000401 AGGAGCGCAA GTGGGAGACT CGCGAACATT ACCTTGACTA GCCACACTCC TGTGTTCTGT TTGGCGCCGG TCAAGTCGAG 000480
000481 TTCCCCGCGC TCGGCCATGG GTCTGCAGCC GGTGGAGGCG TGCGGGATGC AGCAGCGACC CCAGGAGCCG CAGGGCTGAG 000560
000561 GAGCGGGCGT CCGGAACAAA GGACAAGCCG CGCTGAGAGG CGAAGAGCCG GCGTTCCTTA CCTGCCAGAA CACTGGGAAC 000640
000641 CGAGGAAAAG AGGAACACGC CGCCAGGAGC CGGGACTGCG CCTGCGCACT GCTACAATAA AGTTCAATCC TCCTGCTTCA 000720
000721 ACTGGGCcct ctcaatttca tctcttt
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Predicted Small Protein

Name NONHSAT033544_smProtein_140:235
Length 32
Molecular weight 3548.0558
Aromaticity 0.0322580645161
Instability index 93.6483870968
Isoelectric point 12.4003295898
Runs 6
Runs residual 0.00772849462366
Runs probability 0.0272919978802
Amino acid sequence MHRPNLGTPRQDSRKAVRKRSSPGRFRVVTG
Secondary structure LLLLLLLLLLLLLHHHHEELLLLLLEEEELL
PRMN -
PiMo -