Difference between revisions of "NONHSAT033913"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>AGCGGCGTCCGCGCGCGCGGGGCGGCCGCGGCGGTGAGCCTGCGCGTCAGGGCCGCTGGCCTCTCCTTGGCTGTTGGAGAGCCATAGAATACCTGTTTCAGAGCTGAAGGGGACCTGAGCCCATGATAATCCATTACCTCGTGAGAAAGCGGAAAAACTGACTTCAGCTTGCCCAGATGGCGCAGAGAATGGGTTTCCCGTAACCCCGCCTGTGTCTTTCCTTCAGCCTCGTCCCAAATGCCGTGGGAGGGAAGGCACTCTCTGTCAAGCTGCTGTCACCTTACCTGAAGTAAGGAGTCCACGCCTGCATGTCCGAGGAAAACAGTTTTCTCAAACACATTAGTTGAAAAACTGAAGACGCTACCTAAAATACAAGCTGAGTTAGAGACAGCCCTTGTAAGACTAGGTAGGTATTTACAGGGCCTCTCCCACTAGCTTTGTTTTTCCAGAGTTTGTTCTTTATCCGGAAATTCTTAATTTGCCTACTGATCATTTAAAGAAAGGGTTCTATTAACATTGACACAGAAGAGACACTTTGTGGCACTTTTTAAAAATCTGAGTCTCGTGACTTGGTATAACTTCTGAAACTTACTGTTAATTTATAGCAGAGCTATTTGAGTAATATGCTCTTCTATGAGTATGAACAATAGAAGAAGTGTGATTTTTAAAGTGATTTGGACTACAAAATAAGAGCATGGAATATAGGCTTTACAGCCAGTACTTGCTGAGGATGTACTGTGTATTAGGTGTGGTGCATATAAAAAATAAATAAAATGTGGTCCCTGTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>AGCGGCGTCCGCGCGCGCGGGGCGGCCGCGGCGGTGAGCCTGCGCGTCAGGGCCGCTGGCCTCTCCTTGGCTGTTGGAGAGCCATAGAATACCTGTTTCAGAGCTGAAGGGGACCTGAGCCCATGATAATCCATTACCTCGTGAGAAAGCGGAAAAACTGACTTCAGCTTGCCCAGATGGCGCAGAGAATGGGTTTCCCGTAACCCCGCCTGTGTCTTTCCTTCAGCCTCGTCCCAAATGCCGTGGGAGGGAAGGCACTCTCTGTCAAGCTGCTGTCACCTTACCTGAAGTAAGGAGTCCACGCCTGCATGTCCGAGGAAAACAGTTTTCTCAAACACATTAGTTGAAAAACTGAAGACGCTACCTAAAATACAAGCTGAGTTAGAGACAGCCCTTGTAAGACTAGGTAGGTATTTACAGGGCCTCTCCCACTAGCTTTGTTTTTCCAGAGTTTGTTCTTTATCCGGAAATTCTTAATTTGCCTACTGATCATTTAAAGAAAGGGTTCTATTAACATTGACACAGAAGAGACACTTTGTGGCACTTTTTAAAAATCTGAGTCTCGTGACTTGGTATAACTTCTGAAACTTACTGTTAATTTATAGCAGAGCTATTTGAGTAATATGCTCTTCTATGAGTATGAACAATAGAAGAAGTGTGATTTTTAAAGTGATTTGGACTACAAAATAAGAGCATGGAATATAGGCTTTACAGCCAGTACTTGCTGAGGATGTACTGTGTATTAGGTGTGGTGCATATAAAAAATAAATAAAATGTGGTCCCTGTCTTCAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG013555]][[Category:Transcripts]] |
Latest revision as of 21:24, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT033913 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
815 nt |
Genomic location |
chr13+:52027477..52028966 |
Exon number |
2 |
Exons |
52027477..52027554,52028139..52028966 |
Genome context |
|
Sequence |
000001 AGCGGCGTCC GCGCGCGCGG GGCGGCCGCG GCGGTGAGCC TGCGCGTCAG GGCCGCTGGC CTCTCCTTGG CTGTTGGAGA 000080
000081 GCCATAGAAT ACCTGTTTCA GAGCTGAAGG GGACCTGAGC CCATGATAAT CCATTACCTC GTGAGAAAGC GGAAAAACTG 000160 000161 ACTTCAGCTT GCCCAGATGG CGCAGAGAAT GGGTTTCCCG TAACCCCGCC TGTGTCTTTC CTTCAGCCTC GTCCCAAATG 000240 000241 CCGTGGGAGG GAAGGCACTC TCTGTCAAGC TGCTGTCACC TTACCTGAAG TAAGGAGTCC ACGCCTGCAT GTCCGAGGAA 000320 000321 AACAGTTTTC TCAAACACAT TAGTTGAAAA ACTGAAGACG CTACCTAAAA TACAAGCTGA GTTAGAGACA GCCCTTGTAA 000400 000401 GACTAGGTAG GTATTTACAG GGCCTCTCCC ACTAGCTTTG TTTTTCCAGA GTTTGTTCTT TATCCGGAAA TTCTTAATTT 000480 000481 GCCTACTGAT CATTTAAAGA AAGGGTTCTA TTAACATTGA CACAGAAGAG ACACTTTGTG GCACTTTTTA AAAATCTGAG 000560 000561 TCTCGTGACT TGGTATAACT TCTGAAACTT ACTGTTAATT TATAGCAGAG CTATTTGAGT AATATGCTCT TCTATGAGTA 000640 000641 TGAACAATAG AAGAAGTGTG ATTTTTAAAG TGATTTGGAC TACAAAATAA GAGCATGGAA TATAGGCTTT ACAGCCAGTA 000720 000721 CTTGCTGAGG ATGTACTGTG TATTAGGTGT GGTGCATATA AAAAATAAAT AAAATGTGGT CCCTGTCTTC AAAAAAAAAA 000800 000801 AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT033913_smProtein_122:160 |
Length | 13 |
Molecular weight | 1570.9462 |
Aromaticity | 0.0833333333333 |
Instability index | 83.2333333333 |
Isoelectric point | 11.0969848633 |
Runs | 4 |
Runs residual | 0.0166666666667 |
Runs probability | 0.00865571453805 |
Amino acid sequence | MIIHYLVRKRKN |
Secondary structure | LEEEHHHHLLLL |
PRMN | - |
PiMo | - |