Difference between revisions of "NONHSAT038089"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ACACAGTGAGGCAGTCTTCTATTTTCTTCAGGTAATCTTTACTCACACTGGAGTTAGAATTATATGGGTTACTAGGCAAATCTCTGGACTGTAAAATGTGTGTTAGCCATGGAAGCAAGATTTAATATTATAATAAAAGTTGCTCCAAGAAGAGGGCTTAACACTAAAAGGAAGACGTAGTTCTCCTACTCTGAAGACGGCAGGTTCTTTAGACACTGGGCCAGGGAAGCATTATCTTTATCCCCGAGGGTTCACCTCCATGTTAGTCTGTTCCTGAGTCTTGCTTTCCATTCTGAGCTGCCATTGTCTCTTCCTGAAGGATGTGTGGGTTGCTGTTTGTTCCCAGGAAGACTGAGGTTTCATCCTTGATGTTAATCCTTTTGCAAAGTTAATGGTTTGCCTCTTTATCCCTTTACTTAGAGTGTTTCTTTTGAAGTTCCCCATCACAAAGTTTGTATTGCTGTTTCTCAGTGTTTGAAATCTTGTTAGGTACCAATGAGATCACAATTTGGCTCTGCTCTGTAAAAAGCACTCATTTCATGTTTCACAGACCTCTAAAAAGGTTTGTGTATAAGAAGAAGAAGTAGGAGAAACAAAATAAGGAGGAGAAGAAGTAAAATAATTTGAGAAGGAATATGAAGGTAATATAGAAATAAATTTTGTTTTCAATATTAGGCTTTATTTTTAGAGCAGTTTTAGATTCACAGAGAACTTCTGTATATAACCACTTGCCTCTAGATTAAGCTAAATTTGAGTTTATACTGATTTCTCCAAAGCCAATCTATGATTGCTTGGATAATGCTTATCTCCTTCCCTTGCTTTATCTGTAAATTCCTATTCCAACAGTGAGAAGTTTGGCTCTCACCATCCACTGTTCCTTTATTTAATTGTTCAATTCCAGGGCATATATGCAGTAGTTTCAAAGTTGGTAACTAGTGCTTGCCAGGAGGCTACTTTACCAAATAGAGTACAGTGCTTACAGGCAGTTTCTTTTGCCCTTACTCTTACAGACTTTACTCATTTACAAAGTTACTCAGCTCAGCATCTTCCTCTCCTCACCATCTTCGGTGAGATTGTTTCAATAATCTACTAGAGACACAGGTGTAATTTCACCATTATTTGCCATACAATGAAATGTTCCTGTTGCGCATGTGTTATTTTGGAATCCCTGGACCTTCTAAATGTTTCTTTTTTCTTACCTTTTAATTTTAAAGTTTACCCCCTTATGCTTTAAAGTTACATGGGTTTTGGGTCAAATGGTATTTCTAGTTC</dnaseq>| | sequence = <dnaseq>ACACAGTGAGGCAGTCTTCTATTTTCTTCAGGTAATCTTTACTCACACTGGAGTTAGAATTATATGGGTTACTAGGCAAATCTCTGGACTGTAAAATGTGTGTTAGCCATGGAAGCAAGATTTAATATTATAATAAAAGTTGCTCCAAGAAGAGGGCTTAACACTAAAAGGAAGACGTAGTTCTCCTACTCTGAAGACGGCAGGTTCTTTAGACACTGGGCCAGGGAAGCATTATCTTTATCCCCGAGGGTTCACCTCCATGTTAGTCTGTTCCTGAGTCTTGCTTTCCATTCTGAGCTGCCATTGTCTCTTCCTGAAGGATGTGTGGGTTGCTGTTTGTTCCCAGGAAGACTGAGGTTTCATCCTTGATGTTAATCCTTTTGCAAAGTTAATGGTTTGCCTCTTTATCCCTTTACTTAGAGTGTTTCTTTTGAAGTTCCCCATCACAAAGTTTGTATTGCTGTTTCTCAGTGTTTGAAATCTTGTTAGGTACCAATGAGATCACAATTTGGCTCTGCTCTGTAAAAAGCACTCATTTCATGTTTCACAGACCTCTAAAAAGGTTTGTGTATAAGAAGAAGAAGTAGGAGAAACAAAATAAGGAGGAGAAGAAGTAAAATAATTTGAGAAGGAATATGAAGGTAATATAGAAATAAATTTTGTTTTCAATATTAGGCTTTATTTTTAGAGCAGTTTTAGATTCACAGAGAACTTCTGTATATAACCACTTGCCTCTAGATTAAGCTAAATTTGAGTTTATACTGATTTCTCCAAAGCCAATCTATGATTGCTTGGATAATGCTTATCTCCTTCCCTTGCTTTATCTGTAAATTCCTATTCCAACAGTGAGAAGTTTGGCTCTCACCATCCACTGTTCCTTTATTTAATTGTTCAATTCCAGGGCATATATGCAGTAGTTTCAAAGTTGGTAACTAGTGCTTGCCAGGAGGCTACTTTACCAAATAGAGTACAGTGCTTACAGGCAGTTTCTTTTGCCCTTACTCTTACAGACTTTACTCATTTACAAAGTTACTCAGCTCAGCATCTTCCTCTCCTCACCATCTTCGGTGAGATTGTTTCAATAATCTACTAGAGACACAGGTGTAATTTCACCATTATTTGCCATACAATGAAATGTTCCTGTTGCGCATGTGTTATTTTGGAATCCCTGGACCTTCTAAATGTTTCTTTTTTCTTACCTTTTAATTTTAAAGTTTACCCCCTTATGCTTTAAAGTTACATGGGTTTTGGGTCAAATGGTATTTCTAGTTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG015610]][[Category:Transcripts]] |
Latest revision as of 21:43, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT038089 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1272 nt |
| Genomic location |
chr14+:83115921..83117971 |
| Exon number |
2 |
| Exons |
83115921..83116488,83117268..83117971 |
| Genome context |
|
| Sequence |
000001 ACACAGTGAG GCAGTCTTCT ATTTTCTTCA GGTAATCTTT ACTCACACTG GAGTTAGAAT TATATGGGTT ACTAGGCAAA 000080
000081 TCTCTGGACT GTAAAATGTG TGTTAGCCAT GGAAGCAAGA TTTAATATTA TAATAAAAGT TGCTCCAAGA AGAGGGCTTA 000160 000161 ACACTAAAAG GAAGACGTAG TTCTCCTACT CTGAAGACGG CAGGTTCTTT AGACACTGGG CCAGGGAAGC ATTATCTTTA 000240 000241 TCCCCGAGGG TTCACCTCCA TGTTAGTCTG TTCCTGAGTC TTGCTTTCCA TTCTGAGCTG CCATTGTCTC TTCCTGAAGG 000320 000321 ATGTGTGGGT TGCTGTTTGT TCCCAGGAAG ACTGAGGTTT CATCCTTGAT GTTAATCCTT TTGCAAAGTT AATGGTTTGC 000400 000401 CTCTTTATCC CTTTACTTAG AGTGTTTCTT TTGAAGTTCC CCATCACAAA GTTTGTATTG CTGTTTCTCA GTGTTTGAAA 000480 000481 TCTTGTTAGG TACCAATGAG ATCACAATTT GGCTCTGCTC TGTAAAAAGC ACTCATTTCA TGTTTCACAG ACCTCTAAAA 000560 000561 AGGTTTGTGT ATAAGAAGAA GAAGTAGGAG AAACAAAATA AGGAGGAGAA GAAGTAAAAT AATTTGAGAA GGAATATGAA 000640 000641 GGTAATATAG AAATAAATTT TGTTTTCAAT ATTAGGCTTT ATTTTTAGAG CAGTTTTAGA TTCACAGAGA ACTTCTGTAT 000720 000721 ATAACCACTT GCCTCTAGAT TAAGCTAAAT TTGAGTTTAT ACTGATTTCT CCAAAGCCAA TCTATGATTG CTTGGATAAT 000800 000801 GCTTATCTCC TTCCCTTGCT TTATCTGTAA ATTCCTATTC CAACAGTGAG AAGTTTGGCT CTCACCATCC ACTGTTCCTT 000880 000881 TATTTAATTG TTCAATTCCA GGGCATATAT GCAGTAGTTT CAAAGTTGGT AACTAGTGCT TGCCAGGAGG CTACTTTACC 000960 000961 AAATAGAGTA CAGTGCTTAC AGGCAGTTTC TTTTGCCCTT ACTCTTACAG ACTTTACTCA TTTACAAAGT TACTCAGCTC 001040 001041 AGCATCTTCC TCTCCTCACC ATCTTCGGTG AGATTGTTTC AATAATCTAC TAGAGACACA GGTGTAATTT CACCATTATT 001120 001121 TGCCATACAA TGAAATGTTC CTGTTGCGCA TGTGTTATTT TGGAATCCCT GGACCTTCTA AATGTTTCTT TTTTCTTACC 001200 001201 TTTTAATTTT AAAGTTTACC CCCTTATGCT TTAAAGTTAC ATGGGTTTTG GGTCAAATGG TATTTCTAGT TC |
Predicted Small Protein
| Name | NONHSAT038089_smProtein_320:391 |
| Length | 24 |
| Molecular weight | 2579.1927 |
| Aromaticity | 0.0434782608696 |
| Instability index | 73.0608695652 |
| Isoelectric point | 7.97601318359 |
| Runs | 5 |
| Runs residual | 0.0103519668737 |
| Runs probability | 0.0265147500442 |
| Amino acid sequence | MCGLLFVPRKTEVSSLMLILLQS |
| Secondary structure | LLEEEELLLLLLHHHHHHHHHHL |
| PRMN | - |
| PiMo | - |
