Difference between revisions of "NONHSAT039672"

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sequence = <dnaseq>CCTGTGAGCTGTCTAGTGACTTGTGCTGTCCTTCTGTCATGCTGTCTTATCATTTCCCCATTCACTCCATTACTGGGCAACAACTGCAGAAGAAATTGTTGAGGACATGCTTCTCGAGCGCCACACATCCATCTGCCTTTCCCGCCCTGCACTGGTATCAATTTGCCTGCTTCTTCCTTTTCCTAGTGTCTCACAAAATAAATTTCTTCTGTAGTTGCCATTCCTTGGAGACCCTCTTGCTTCTTTCTCTGTCAAGAAGGGGAAAGAGGCAAAGAGAGAAGAGGGAACAGTAGGCGATGGAGAATGACAGTCCATTGTTGCAGCACAGAATATGGGGCCACCAAAGGTAGTGGTGGACTACCGTCATTTTAACTCCATTTGCTTAGCAGTGCTTCTGTTACTTCATTTTGGGGGACATAGTCGGGTGAGGTGGCTGTGGTAgagctggaagccagggtgttgggttctattcccagtttggctactactagtagtgtgaccttgggcaagtctacttaaagacatctctaagcctcagtttcctcatctgtaaaactagggtttgcattgaatgatgactttttcagctGTCTGCTTTTTGTCTTAAATGATATTAATGTTCTACCGTAATACTAAGTAAAATTAAAATGGGGGGTTGGGGAGGTGGTTTTGTTTTAATATGTCAGTAAAGGCTGTTAAATGGTTGAATCCTTTCTAACAGTTTGCAATGTGAACTTCTAAGCTGCTTTCTCTGTTTTAAGGGCTGCACAAAGATGTTCAGGGATAACTCGGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGCAGAATGTGGCAAAGCTTTTGTTGAGAGTTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGGTAGAGCCAGTTCCCTCTCTTCCCCACACTGCCTTGCCTGTCTGAACACTGCAAGTGTAGGTGGTGTGGTGATGAGGCAGGAGGCGCCAGCCCAGAGACTCAGGGTCTTATTACTCCTTGGTGAGAAACAAAACTTCTCCTGGGGAGTCGCTTAGAAGGGTTGCCGGGGCTCTGGACATCCTTGTCTATACTCTGTGGTACTGGGTACGCAATGTATTGGTGTTGATGGAGTACACTTTATGGCAGGAGGAGAACAGGATTGAAGAGCATACCTAAAACTCAATTTCTACTTCATTCATTACAGGATTGAAGTAATTTATTTTTGGTAGTTAATAGTATAATTACTAACTGATAAAGTTTCTAGAGTGTAAGTATAGGTAATACTTTAGCCCATAAATAAGTGAAAGAACTAGCAGTGCAGCTAGTAAATCTAACGTGGTTCTTTTTTGACAACTGACACCAGAACCCTTAATCATTTGTATTTTACTGTTGGAAATGTTTACAGCAGCACTAGGACTCTAGCCTGCATTTAGGAAGACTTGCCATTTTGCCAAGTGTTTTAAACAGTTCGTGAGGGCTCTCCTTGGGTTTTCGGGGTTGTCCAACCTGCCTGCTGATTCTAGACTATATCCACAAAGTTCACCCAGGGCAGGAATGAAAAGTGTTTGGTAAAATAAATAGGCTGTTCTCTAGCAAAGCAGTGAGCTCCTGACTCCCAGGGTCTGGTCAGAGTTGCTGAGTGGGTTGATCTCTGGTCTTTCCTTGACAGTGCACGTTCGAAGGCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGCCCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCAAAAACAACCAGTGAAAAGAAGAGAGAAGACCCTTCTCGACCACGGGAAGCATCTTCCAGAAGTGTGATTGGGAATAAATATGCCTCTCCTTTGTATATTATTTCTAGGAAGAATTTTAAAAATGAATCCTACACACCTAAGGGACATGTTTTGATAAAGTAGTAAAAATTAAAAAAAAAAAACTTTACTAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAAAACACAGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACAATTCATGAACTTCGCATCAAAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAATATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTGTACACTTTTTTGGGGATATGCTTAGTAATGCTACGTGTGATTTTTCTGGAGGTTGATAACTTTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATTTTCCTGTAAAAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATTCTTTGATGTTAACACATTTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATCAAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCATTTTAGTCACTTTTTTTTTCCAAAAAAATACTGCCAGATGCTGATGTTCAGTGTAATTTCTTTGCCTGTTCAGTTACAGAAAGTGGTGCTCAGTTGTAGAATGTATTGTACCTTTTAACACCTGATGTGTACATCCCATGTAACAGAAAGGGCAACAATAAAATAGCAATCCTAAAGCAA</dnaseq>|
 
sequence = <dnaseq>CCTGTGAGCTGTCTAGTGACTTGTGCTGTCCTTCTGTCATGCTGTCTTATCATTTCCCCATTCACTCCATTACTGGGCAACAACTGCAGAAGAAATTGTTGAGGACATGCTTCTCGAGCGCCACACATCCATCTGCCTTTCCCGCCCTGCACTGGTATCAATTTGCCTGCTTCTTCCTTTTCCTAGTGTCTCACAAAATAAATTTCTTCTGTAGTTGCCATTCCTTGGAGACCCTCTTGCTTCTTTCTCTGTCAAGAAGGGGAAAGAGGCAAAGAGAGAAGAGGGAACAGTAGGCGATGGAGAATGACAGTCCATTGTTGCAGCACAGAATATGGGGCCACCAAAGGTAGTGGTGGACTACCGTCATTTTAACTCCATTTGCTTAGCAGTGCTTCTGTTACTTCATTTTGGGGGACATAGTCGGGTGAGGTGGCTGTGGTAgagctggaagccagggtgttgggttctattcccagtttggctactactagtagtgtgaccttgggcaagtctacttaaagacatctctaagcctcagtttcctcatctgtaaaactagggtttgcattgaatgatgactttttcagctGTCTGCTTTTTGTCTTAAATGATATTAATGTTCTACCGTAATACTAAGTAAAATTAAAATGGGGGGTTGGGGAGGTGGTTTTGTTTTAATATGTCAGTAAAGGCTGTTAAATGGTTGAATCCTTTCTAACAGTTTGCAATGTGAACTTCTAAGCTGCTTTCTCTGTTTTAAGGGCTGCACAAAGATGTTCAGGGATAACTCGGCCATGAGAAAACATCTGCACACCCACGGTCCCAGAGTCCACGTCTGTGCAGAATGTGGCAAAGCTTTTGTTGAGAGTTCAAAACTAAAACGACACCAACTGGTTCATACTGGAGAGAAGCCCTTTCAGGTAGAGCCAGTTCCCTCTCTTCCCCACACTGCCTTGCCTGTCTGAACACTGCAAGTGTAGGTGGTGTGGTGATGAGGCAGGAGGCGCCAGCCCAGAGACTCAGGGTCTTATTACTCCTTGGTGAGAAACAAAACTTCTCCTGGGGAGTCGCTTAGAAGGGTTGCCGGGGCTCTGGACATCCTTGTCTATACTCTGTGGTACTGGGTACGCAATGTATTGGTGTTGATGGAGTACACTTTATGGCAGGAGGAGAACAGGATTGAAGAGCATACCTAAAACTCAATTTCTACTTCATTCATTACAGGATTGAAGTAATTTATTTTTGGTAGTTAATAGTATAATTACTAACTGATAAAGTTTCTAGAGTGTAAGTATAGGTAATACTTTAGCCCATAAATAAGTGAAAGAACTAGCAGTGCAGCTAGTAAATCTAACGTGGTTCTTTTTTGACAACTGACACCAGAACCCTTAATCATTTGTATTTTACTGTTGGAAATGTTTACAGCAGCACTAGGACTCTAGCCTGCATTTAGGAAGACTTGCCATTTTGCCAAGTGTTTTAAACAGTTCGTGAGGGCTCTCCTTGGGTTTTCGGGGTTGTCCAACCTGCCTGCTGATTCTAGACTATATCCACAAAGTTCACCCAGGGCAGGAATGAAAAGTGTTTGGTAAAATAAATAGGCTGTTCTCTAGCAAAGCAGTGAGCTCCTGACTCCCAGGGTCTGGTCAGAGTTGCTGAGTGGGTTGATCTCTGGTCTTTCCTTGACAGTGCACGTTCGAAGGCTGTGGGAAACGCTTTTCACTGGACTTCAATTTGCGCACACATGTGCGAATCCATACCGGAGACAGGCCCTATGTGTGCCCCTTCGATGGTTGTAATAAGAAGTTTGCTCAGTCAACTAACCTGAAATCTCACATCTTAACACATGCTAAGGCCAAAAACAACCAGTGAAAAGAAGAGAGAAGACCCTTCTCGACCACGGGAAGCATCTTCCAGAAGTGTGATTGGGAATAAATATGCCTCTCCTTTGTATATTATTTCTAGGAAGAATTTTAAAAATGAATCCTACACACCTAAGGGACATGTTTTGATAAAGTAGTAAAAATTAAAAAAAAAAAACTTTACTAAGATGACATTGCTAAGATGCTCTATCTTGCTCTGTAATCTCGTTTCAAAAACACAGTGTTTTTGTAAAGTGTGGTCCCAACAGGAGGACAATTCATGAACTTCGCATCAAAAGACAATTCTTTATACAACAGTGCTAAAAATGGGACTTCTTTTCACATTCTTATAAATATGAAGCTCACCTGTTGCTTACAATTTTTTTAATTTTGTATTTTCCAAGTGTGCATATTGTACACTTTTTTGGGGATATGCTTAGTAATGCTACGTGTGATTTTTCTGGAGGTTGATAACTTTGCTTGCAGTAGATTTTCTTTAAAAGAATGGGCAGTTACATGCATACTTCAAAAGTATTTTCCTGTAAAAAAAAAAAAGTTATATAGGTTTTGTTTGCTATCTTAATTTTGGTTGTATTCTTTGATGTTAACACATTTTGTATAATTGTATCGTATAGCTGTATTGAATCATGTAGTATCAAATATTAGATGTGATTTAATAGTGTTAATCAATTTAAACCCATTTTAGTCACTTTTTTTTTCCAAAAAAATACTGCCAGATGCTGATGTTCAGTGTAATTTCTTTGCCTGTTCAGTTACAGAAAGTGGTGCTCAGTTGTAGAATGTATTGTACCTTTTAACACCTGATGTGTACATCCCATGTAACAGAAAGGGCAACAATAAAATAGCAATCCTAAAGCAA</dnaseq>|
 
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[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG015896]][[Category:Transcripts]]

Latest revision as of 21:46, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT039672

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2742 nt

Genomic location

chr14+:100742066..100744807

Exon number

1

Exons

100742066..100744807

Genome context

Sequence
000001 CCTGTGAGCT GTCTAGTGAC TTGTGCTGTC CTTCTGTCAT GCTGTCTTAT CATTTCCCCA TTCACTCCAT TACTGGGCAA 000080
000081 CAACTGCAGA AGAAATTGTT GAGGACATGC TTCTCGAGCG CCACACATCC ATCTGCCTTT CCCGCCCTGC ACTGGTATCA 000160
000161 ATTTGCCTGC TTCTTCCTTT TCCTAGTGTC TCACAAAATA AATTTCTTCT GTAGTTGCCA TTCCTTGGAG ACCCTCTTGC 000240
000241 TTCTTTCTCT GTCAAGAAGG GGAAAGAGGC AAAGAGAGAA GAGGGAACAG TAGGCGATGG AGAATGACAG TCCATTGTTG 000320
000321 CAGCACAGAA TATGGGGCCA CCAAAGGTAG TGGTGGACTA CCGTCATTTT AACTCCATTT GCTTAGCAGT GCTTCTGTTA 000400
000401 CTTCATTTTG GGGGACATAG TCGGGTGAGG TGGCTGTGGT Agagctggaa gccagggtgt tgggttctat tcccagtttg 000480
000481 gctactacta gtagtgtgac cttgggcaag tctacttaaa gacatctcta agcctcagtt tcctcatctg taaaactagg 000560
000561 gtttgcattg aatgatgact ttttcagctG TCTGCTTTTT GTCTTAAATG ATATTAATGT TCTACCGTAA TACTAAGTAA 000640
000641 AATTAAAATG GGGGGTTGGG GAGGTGGTTT TGTTTTAATA TGTCAGTAAA GGCTGTTAAA TGGTTGAATC CTTTCTAACA 000720
000721 GTTTGCAATG TGAACTTCTA AGCTGCTTTC TCTGTTTTAA GGGCTGCACA AAGATGTTCA GGGATAACTC GGCCATGAGA 000800
000801 AAACATCTGC ACACCCACGG TCCCAGAGTC CACGTCTGTG CAGAATGTGG CAAAGCTTTT GTTGAGAGTT CAAAACTAAA 000880
000881 ACGACACCAA CTGGTTCATA CTGGAGAGAA GCCCTTTCAG GTAGAGCCAG TTCCCTCTCT TCCCCACACT GCCTTGCCTG 000960
000961 TCTGAACACT GCAAGTGTAG GTGGTGTGGT GATGAGGCAG GAGGCGCCAG CCCAGAGACT CAGGGTCTTA TTACTCCTTG 001040
001041 GTGAGAAACA AAACTTCTCC TGGGGAGTCG CTTAGAAGGG TTGCCGGGGC TCTGGACATC CTTGTCTATA CTCTGTGGTA 001120
001121 CTGGGTACGC AATGTATTGG TGTTGATGGA GTACACTTTA TGGCAGGAGG AGAACAGGAT TGAAGAGCAT ACCTAAAACT 001200
001201 CAATTTCTAC TTCATTCATT ACAGGATTGA AGTAATTTAT TTTTGGTAGT TAATAGTATA ATTACTAACT GATAAAGTTT 001280
001281 CTAGAGTGTA AGTATAGGTA ATACTTTAGC CCATAAATAA GTGAAAGAAC TAGCAGTGCA GCTAGTAAAT CTAACGTGGT 001360
001361 TCTTTTTTGA CAACTGACAC CAGAACCCTT AATCATTTGT ATTTTACTGT TGGAAATGTT TACAGCAGCA CTAGGACTCT 001440
001441 AGCCTGCATT TAGGAAGACT TGCCATTTTG CCAAGTGTTT TAAACAGTTC GTGAGGGCTC TCCTTGGGTT TTCGGGGTTG 001520
001521 TCCAACCTGC CTGCTGATTC TAGACTATAT CCACAAAGTT CACCCAGGGC AGGAATGAAA AGTGTTTGGT AAAATAAATA 001600
001601 GGCTGTTCTC TAGCAAAGCA GTGAGCTCCT GACTCCCAGG GTCTGGTCAG AGTTGCTGAG TGGGTTGATC TCTGGTCTTT 001680
001681 CCTTGACAGT GCACGTTCGA AGGCTGTGGG AAACGCTTTT CACTGGACTT CAATTTGCGC ACACATGTGC GAATCCATAC 001760
001761 CGGAGACAGG CCCTATGTGT GCCCCTTCGA TGGTTGTAAT AAGAAGTTTG CTCAGTCAAC TAACCTGAAA TCTCACATCT 001840
001841 TAACACATGC TAAGGCCAAA AACAACCAGT GAAAAGAAGA GAGAAGACCC TTCTCGACCA CGGGAAGCAT CTTCCAGAAG 001920
001921 TGTGATTGGG AATAAATATG CCTCTCCTTT GTATATTATT TCTAGGAAGA ATTTTAAAAA TGAATCCTAC ACACCTAAGG 002000
002001 GACATGTTTT GATAAAGTAG TAAAAATTAA AAAAAAAAAA CTTTACTAAG ATGACATTGC TAAGATGCTC TATCTTGCTC 002080
002081 TGTAATCTCG TTTCAAAAAC ACAGTGTTTT TGTAAAGTGT GGTCCCAACA GGAGGACAAT TCATGAACTT CGCATCAAAA 002160
002161 GACAATTCTT TATACAACAG TGCTAAAAAT GGGACTTCTT TTCACATTCT TATAAATATG AAGCTCACCT GTTGCTTACA 002240
002241 ATTTTTTTAA TTTTGTATTT TCCAAGTGTG CATATTGTAC ACTTTTTTGG GGATATGCTT AGTAATGCTA CGTGTGATTT 002320
002321 TTCTGGAGGT TGATAACTTT GCTTGCAGTA GATTTTCTTT AAAAGAATGG GCAGTTACAT GCATACTTCA AAAGTATTTT 002400
002401 CCTGTAAAAA AAAAAAAGTT ATATAGGTTT TGTTTGCTAT CTTAATTTTG GTTGTATTCT TTGATGTTAA CACATTTTGT 002480
002481 ATAATTGTAT CGTATAGCTG TATTGAATCA TGTAGTATCA AATATTAGAT GTGATTTAAT AGTGTTAATC AATTTAAACC 002560
002561 CATTTTAGTC ACTTTTTTTT TCCAAAAAAA TACTGCCAGA TGCTGATGTT CAGTGTAATT TCTTTGCCTG TTCAGTTACA 002640
002641 GAAAGTGGTG CTCAGTTGTA GAATGTATTG TACCTTTTAA CACCTGATGT GTACATCCCA TGTAACAGAA AGGGCAACAA 002720
002721 TAAAATAGCA ATCCTAAAGC AA
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Predicted Small Protein

Name NONHSAT039672_smProtein_38:292
Length 85
Molecular weight 9944.5357
Aromaticity 0.142857142857
Instability index 60.3607142857
Isoelectric point 9.96075439453
Runs 11
Runs residual 0.0030330603579
Runs probability 0.0669653610829
Amino acid sequence MLSYHFPIHSITGQQLQKKLLRTCFSSATHPSAFPALHWYQFACFFLFLVSHKINFFCSC
HSLETLLLLSLSRRGKRQREKREQ
Secondary structure LLLEELLLLLLLHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHHHHHHHHLLLLLLLLL
LHHHHHHHHHHHHHLHHHHHHHLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL
LLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii
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