Difference between revisions of "NONHSAT053005"

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sequence = <dnaseq>TGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACATTTGGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACAGCCGGAACTATAGGTGGGAGCAAAGAATTAGCCTTTCCGCTGCCTACCTCTTTTTTCCTGAAACTCCACTGGCAGTCAGCTCCTGCTAGCAGCTCCAGGCCCTCTCCTACAGGAAGACTTCCTGGATTAATCTGCTAATCTTCAGCTCATCCACCTGTTTAATAGGCAAAACCTACAGAACTAGTCCACACTGAGTGGACCTCTGGGGCTCCCAGCTGCCGATTGACCTGAACCCCAGAGTGAACTCGTGTTGCTTTGTGGCTTCAGGAAACCTTGGAACATCTCTGTGCTGTTTTTTCATTTGTGCTCAATCATTCCTGAGGCCTCCTCCTCCTGCTGCAATTTGACAAGACTTGACCAAATCATTAACTCCCAGTTAATGGGATAAAATGAGTTTGAATCTGGGATTCTGGTCATTAACCCCATGTCACCATCTGCTCCAGCAGTTTGATGGCAGGGCTAGGTGAATTCTAATCACCCAACACTTGTTAAACTGCTGATTCCTGCTTCCCCACCTCTGCTGACTCAGCATCTCTGGGGTGGGGCCTGCAAAGGCTCTCTTCCTTGACGGGGTTATTGAGGGCAGCTCTAGGAACCCACCCAGGACCAGACCTGATGAGGAGTTCCTCCTATGCATCAGGTATGCTGGGTCGGTTTGCGGAGTTTCATAACTTGCATTTTCCTCTGCCTGGAGAGTTCCTTGCAGCTGGCTTCTTCTGTGTCACGGCCCCACAGAGATCTTGGCTGGTCTCCCTATCTCCACCCTCCACCATGCTCACTATTCCATTACAAGTTTCCTTTTCTACCCAGTACTAATCATTTTCTGCAATTCATCTCATTTCCTTGTGAACTATCTGTTGGTCCTACCAGAATGTAAGTCTCCACCTGGGGGCAGAGACCCTGCCTGGCTTGTTAGAAGCCATATCCCCAGGATTGAAGCATATGAGAGATGCTCAGAAATACAAGAATTCATGAACAA</dnaseq>|
 
sequence = <dnaseq>TGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACATTTGGGCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTCTGATCCTGGATTTGTCAGATGGAAGTACAGCCGGAACTATAGGTGGGAGCAAAGAATTAGCCTTTCCGCTGCCTACCTCTTTTTTCCTGAAACTCCACTGGCAGTCAGCTCCTGCTAGCAGCTCCAGGCCCTCTCCTACAGGAAGACTTCCTGGATTAATCTGCTAATCTTCAGCTCATCCACCTGTTTAATAGGCAAAACCTACAGAACTAGTCCACACTGAGTGGACCTCTGGGGCTCCCAGCTGCCGATTGACCTGAACCCCAGAGTGAACTCGTGTTGCTTTGTGGCTTCAGGAAACCTTGGAACATCTCTGTGCTGTTTTTTCATTTGTGCTCAATCATTCCTGAGGCCTCCTCCTCCTGCTGCAATTTGACAAGACTTGACCAAATCATTAACTCCCAGTTAATGGGATAAAATGAGTTTGAATCTGGGATTCTGGTCATTAACCCCATGTCACCATCTGCTCCAGCAGTTTGATGGCAGGGCTAGGTGAATTCTAATCACCCAACACTTGTTAAACTGCTGATTCCTGCTTCCCCACCTCTGCTGACTCAGCATCTCTGGGGTGGGGCCTGCAAAGGCTCTCTTCCTTGACGGGGTTATTGAGGGCAGCTCTAGGAACCCACCCAGGACCAGACCTGATGAGGAGTTCCTCCTATGCATCAGGTATGCTGGGTCGGTTTGCGGAGTTTCATAACTTGCATTTTCCTCTGCCTGGAGAGTTCCTTGCAGCTGGCTTCTTCTGTGTCACGGCCCCACAGAGATCTTGGCTGGTCTCCCTATCTCCACCCTCCACCATGCTCACTATTCCATTACAAGTTTCCTTTTCTACCCAGTACTAATCATTTTCTGCAATTCATCTCATTTCCTTGTGAACTATCTGTTGGTCCTACCAGAATGTAAGTCTCCACCTGGGGGCAGAGACCCTGCCTGGCTTGTTAGAAGCCATATCCCCAGGATTGAAGCATATGAGAGATGCTCAGAAATACAAGAATTCATGAACAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG021513]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:14, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT053005

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1098 nt

Genomic location

chr17+:32484929..32489257

Exon number

3

Exons

32484929..32485139,32486062..32486134,32488444..32489257

Genome context

Sequence
000001 TGTGTGTGTA TTCTGATCCT GGATTTGTCA GATGGAAGTA CATTTGGGCA GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT 000080
000081 GTGTGTATTC TGATCCTGGA TTTGTCAGAT GGAAGTACAG CCGGAACTAT AGGTGGGAGC AAAGAATTAG CCTTTCCGCT 000160
000161 GCCTACCTCT TTTTTCCTGA AACTCCACTG GCAGTCAGCT CCTGCTAGCA GCTCCAGGCC CTCTCCTACA GGAAGACTTC 000240
000241 CTGGATTAAT CTGCTAATCT TCAGCTCATC CACCTGTTTA ATAGGCAAAA CCTACAGAAC TAGTCCACAC TGAGTGGACC 000320
000321 TCTGGGGCTC CCAGCTGCCG ATTGACCTGA ACCCCAGAGT GAACTCGTGT TGCTTTGTGG CTTCAGGAAA CCTTGGAACA 000400
000401 TCTCTGTGCT GTTTTTTCAT TTGTGCTCAA TCATTCCTGA GGCCTCCTCC TCCTGCTGCA ATTTGACAAG ACTTGACCAA 000480
000481 ATCATTAACT CCCAGTTAAT GGGATAAAAT GAGTTTGAAT CTGGGATTCT GGTCATTAAC CCCATGTCAC CATCTGCTCC 000560
000561 AGCAGTTTGA TGGCAGGGCT AGGTGAATTC TAATCACCCA ACACTTGTTA AACTGCTGAT TCCTGCTTCC CCACCTCTGC 000640
000641 TGACTCAGCA TCTCTGGGGT GGGGCCTGCA AAGGCTCTCT TCCTTGACGG GGTTATTGAG GGCAGCTCTA GGAACCCACC 000720
000721 CAGGACCAGA CCTGATGAGG AGTTCCTCCT ATGCATCAGG TATGCTGGGT CGGTTTGCGG AGTTTCATAA CTTGCATTTT 000800
000801 CCTCTGCCTG GAGAGTTCCT TGCAGCTGGC TTCTTCTGTG TCACGGCCCC ACAGAGATCT TGGCTGGTCT CCCTATCTCC 000880
000881 ACCCTCCACC ATGCTCACTA TTCCATTACA AGTTTCCTTT TCTACCCAGT ACTAATCATT TTCTGCAATT CATCTCATTT 000960
000961 CCTTGTGAAC TATCTGTTGG TCCTACCAGA ATGTAAGTCT CCACCTGGGG GCAGAGACCC TGCCTGGCTT GTTAGAAGCC 001040
001041 ATATCCCCAG GATTGAAGCA TATGAGAGAT GCTCAGAAAT ACAAGAATTC ATGAACAA
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Predicted Small Protein

Name NONHSAT053005_smProtein_734:934
Length 67
Molecular weight 7314.3589
Aromaticity 0.151515151515
Instability index 57.003030303
Isoelectric point 7.99871826172
Runs 11
Runs residual 0.0160587915079
Runs probability 0.0582775288659
Amino acid sequence MRSSSYASGMLGRFAEFHNLHFPLPGEFLAAGFFCVTAPQRSWLVSLSPPSTMLTIPLQV
SFSTQY
Secondary structure LLLLHHHHHHHHHHHHHHHHLLLLLHHHHHLLEEEELLLLLEEEEEELLLLLEEEEEEEE
EEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
LLLLLL
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