Difference between revisions of "NONHSAT053635"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(2 intermediate revisions by 2 users not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>CTCTTGGCTTCAGGCTCTGAAGCACTCCCCATCTCAGGCCCAAACAGGAATAAAATCAGTTCCTTTCTCTGTTCCTCTTACTAGACTGAGATCCACTGGGATTGCCTGAGGGAATTCTTGTGAAACCAGAAAGAAAGTTCAAGAAATGATGCAACAACAACAAAATAAAACCCAGGAGAAATAGTACGACAAGAAGTTAAAAGATCGTGAGGAGAGCCCTGCAGTGGAGGAGGAGAACCTGTTGGCCAGGAACTGCCAACAGCTTTTGTTCTGGATAAGCCCCTCGTGGAGGAGGACAAGGCAAGAAGATGGGTCTTCATCCTAACCCACGGAAGCAGCGCTGGACTGAGAAGCACCACCTGCGAAACTCCCAGCCCCACTGAGTAACCTCCAGGGCAGGGGCATGTCCCTGCTTACGAGCTCCCACCAGCCCGTCACACCCCCCCACCCACCTCAGAGGCTCCTGCCCCTGACCTGAGTGAGCTGTGTCTGAGTTGGGTCCCTCCTCCCTCCAAGGAGTGTGCTCTATGGACAACAGCCTCTATCCTCATTTGTCCCTTCCTCCTAGCGCCTCCTTCTGCACCCCTGACCCCGCTCCATGCTGTCACCTCCTCTGTATGGCAGCTGGGCCTCGTCTGTCCTGGGACGGTGGCAAGCATGTACAGAAGTCATCTTCCTTATTTCTCACTACCCCCAGCTTCCCAGATGGGAAACTGAGGCTCAGAGAAATGACATAACTCAGCTGACAAAGGATCTGAGTGGGTCTGACCCGCAAGCCCACCCTCTTCACCTCATGCTGTCTAAAACAATTACAGACACCTCCCACGAGCAGGAAAGCTCTGGAAATGTCTTCTTGGAAAGCAAGCAGCTACCCATGAACAGACTTCTCAAAGCTTTTGGCCTTGGCCTCCCAAGGTGCTGGGACTACAGGCGTGGGTCACTGCACCTGGCCAAAGCTTTTGTTTGCTTAAAGTGCTTTGTAAGTTTATAAGAGGAGGCTACAGAACCCAGAAATCACCTATGGATTTGACCACGAGATGCGCTGCTGAATTCATGGTGGGAAATGCTGATGATCTCTGATGGAGGCTGCTGGGTGGCTGCTGCCCACACCCTGACCTGTCCTCCCCAGCTGGACGGGGGACTTCTAGGAGGGGGAGGGTCCCCACTGAAGATGGACACATGTCCTGTCAGAGTTTCTGAGAAGCTCCAGCCCTTAGGCAGAATGGGACAAGGAGAAACAGACTTGGGTCTGTACTCGGGACTGCAGAAGCCGAGCATGAGGAGTTGTGGGGACAGTGCCCCTCCTTCATCCCCACCTCCCAGCCCCCCAGTATCTCCTTCTCCCCCTGATCCTTCCCTTGATCAGGCCAGGGCCCTGTCATTGTCCCAACAAATGCCTACCGCCAGTTCATCGCACCTTGTTTTCTCTGATGTCCTCGCAATCACACACCTTGTGCCCCTGAGCTGGGTACACGATCCTTTGCAATGTGTGCTACGAGAACTGTATTGCTAATAATAAAGACAAAATTTAATGACTCCACTGGCTGAGCTTCTGGTAGGTCCCAGGCACGTTAGACAGACTATTTCATTAATTCTCACCTCGGCAATTTGAGGAAGGTCTTGCTGTCTCAGTATCCTGAGTCTTAGACAGGTTCAATGACTTGCACAAGGTCACATAGCTTTTAAGTGACAGGGCCTGGCTGCCTTGGCTCTGAAGTGAGTTCTCTTTGCAACAACCTACCCAGCTGAGCCCCTCCTTTGTTTAGAGAAGGCTTCTCCTCTGAGCTGGGAAGATCCAACTTTGACCCTCAATTCTCAGATGACAGTGGTTCAGTCAGGCAGGAACTAGCTGTACTAACTTGTAAACAAGTCACTTCTGCAAGGAGAGGCAGAGGCCAGTGCTTGCGCGAGCGTGACTGATAAAGGAGTGGGGCGAGGGCTGAGGACTGTCTGGCTCTACCGATTTATGATACTGAAAGTCATCAATCTTAAAGAGAGATCTGCATTCCCCAAGCTTTCTTCTCCCTGAGGGGCCTCTCCTATCTCTCGCCAATATTGTGGCTCCCCTCAGCCGCAGGGGCAATCTTTCTGGTTTTCTCTTAGGTCCAAACACGAACCAAATAAAATCCTCTTTGCCCTTC</dnaseq>| | sequence = <dnaseq>CTCTTGGCTTCAGGCTCTGAAGCACTCCCCATCTCAGGCCCAAACAGGAATAAAATCAGTTCCTTTCTCTGTTCCTCTTACTAGACTGAGATCCACTGGGATTGCCTGAGGGAATTCTTGTGAAACCAGAAAGAAAGTTCAAGAAATGATGCAACAACAACAAAATAAAACCCAGGAGAAATAGTACGACAAGAAGTTAAAAGATCGTGAGGAGAGCCCTGCAGTGGAGGAGGAGAACCTGTTGGCCAGGAACTGCCAACAGCTTTTGTTCTGGATAAGCCCCTCGTGGAGGAGGACAAGGCAAGAAGATGGGTCTTCATCCTAACCCACGGAAGCAGCGCTGGACTGAGAAGCACCACCTGCGAAACTCCCAGCCCCACTGAGTAACCTCCAGGGCAGGGGCATGTCCCTGCTTACGAGCTCCCACCAGCCCGTCACACCCCCCCACCCACCTCAGAGGCTCCTGCCCCTGACCTGAGTGAGCTGTGTCTGAGTTGGGTCCCTCCTCCCTCCAAGGAGTGTGCTCTATGGACAACAGCCTCTATCCTCATTTGTCCCTTCCTCCTAGCGCCTCCTTCTGCACCCCTGACCCCGCTCCATGCTGTCACCTCCTCTGTATGGCAGCTGGGCCTCGTCTGTCCTGGGACGGTGGCAAGCATGTACAGAAGTCATCTTCCTTATTTCTCACTACCCCCAGCTTCCCAGATGGGAAACTGAGGCTCAGAGAAATGACATAACTCAGCTGACAAAGGATCTGAGTGGGTCTGACCCGCAAGCCCACCCTCTTCACCTCATGCTGTCTAAAACAATTACAGACACCTCCCACGAGCAGGAAAGCTCTGGAAATGTCTTCTTGGAAAGCAAGCAGCTACCCATGAACAGACTTCTCAAAGCTTTTGGCCTTGGCCTCCCAAGGTGCTGGGACTACAGGCGTGGGTCACTGCACCTGGCCAAAGCTTTTGTTTGCTTAAAGTGCTTTGTAAGTTTATAAGAGGAGGCTACAGAACCCAGAAATCACCTATGGATTTGACCACGAGATGCGCTGCTGAATTCATGGTGGGAAATGCTGATGATCTCTGATGGAGGCTGCTGGGTGGCTGCTGCCCACACCCTGACCTGTCCTCCCCAGCTGGACGGGGGACTTCTAGGAGGGGGAGGGTCCCCACTGAAGATGGACACATGTCCTGTCAGAGTTTCTGAGAAGCTCCAGCCCTTAGGCAGAATGGGACAAGGAGAAACAGACTTGGGTCTGTACTCGGGACTGCAGAAGCCGAGCATGAGGAGTTGTGGGGACAGTGCCCCTCCTTCATCCCCACCTCCCAGCCCCCCAGTATCTCCTTCTCCCCCTGATCCTTCCCTTGATCAGGCCAGGGCCCTGTCATTGTCCCAACAAATGCCTACCGCCAGTTCATCGCACCTTGTTTTCTCTGATGTCCTCGCAATCACACACCTTGTGCCCCTGAGCTGGGTACACGATCCTTTGCAATGTGTGCTACGAGAACTGTATTGCTAATAATAAAGACAAAATTTAATGACTCCACTGGCTGAGCTTCTGGTAGGTCCCAGGCACGTTAGACAGACTATTTCATTAATTCTCACCTCGGCAATTTGAGGAAGGTCTTGCTGTCTCAGTATCCTGAGTCTTAGACAGGTTCAATGACTTGCACAAGGTCACATAGCTTTTAAGTGACAGGGCCTGGCTGCCTTGGCTCTGAAGTGAGTTCTCTTTGCAACAACCTACCCAGCTGAGCCCCTCCTTTGTTTAGAGAAGGCTTCTCCTCTGAGCTGGGAAGATCCAACTTTGACCCTCAATTCTCAGATGACAGTGGTTCAGTCAGGCAGGAACTAGCTGTACTAACTTGTAAACAAGTCACTTCTGCAAGGAGAGGCAGAGGCCAGTGCTTGCGCGAGCGTGACTGATAAAGGAGTGGGGCGAGGGCTGAGGACTGTCTGGCTCTACCGATTTATGATACTGAAAGTCATCAATCTTAAAGAGAGATCTGCATTCCCCAAGCTTTCTTCTCCCTGAGGGGCCTCTCCTATCTCTCGCCAATATTGTGGCTCCCCTCAGCCGCAGGGGCAATCTTTCTGGTTTTCTCTTAGGTCCAAACACGAACCAAATAAAATCCTCTTTGCCCTTC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG021780]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 22:17, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT053635 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2141 nt |
Genomic location |
chr17-:39705858..39710747 |
Exon number |
3 |
Exons |
39705858..39707117,39708125..39708789,39710532..39710747 |
Genome context |
|
Sequence |
000001 CTCTTGGCTT CAGGCTCTGA AGCACTCCCC ATCTCAGGCC CAAACAGGAA TAAAATCAGT TCCTTTCTCT GTTCCTCTTA 000080
000081 CTAGACTGAG ATCCACTGGG ATTGCCTGAG GGAATTCTTG TGAAACCAGA AAGAAAGTTC AAGAAATGAT GCAACAACAA 000160 000161 CAAAATAAAA CCCAGGAGAA ATAGTACGAC AAGAAGTTAA AAGATCGTGA GGAGAGCCCT GCAGTGGAGG AGGAGAACCT 000240 000241 GTTGGCCAGG AACTGCCAAC AGCTTTTGTT CTGGATAAGC CCCTCGTGGA GGAGGACAAG GCAAGAAGAT GGGTCTTCAT 000320 000321 CCTAACCCAC GGAAGCAGCG CTGGACTGAG AAGCACCACC TGCGAAACTC CCAGCCCCAC TGAGTAACCT CCAGGGCAGG 000400 000401 GGCATGTCCC TGCTTACGAG CTCCCACCAG CCCGTCACAC CCCCCCACCC ACCTCAGAGG CTCCTGCCCC TGACCTGAGT 000480 000481 GAGCTGTGTC TGAGTTGGGT CCCTCCTCCC TCCAAGGAGT GTGCTCTATG GACAACAGCC TCTATCCTCA TTTGTCCCTT 000560 000561 CCTCCTAGCG CCTCCTTCTG CACCCCTGAC CCCGCTCCAT GCTGTCACCT CCTCTGTATG GCAGCTGGGC CTCGTCTGTC 000640 000641 CTGGGACGGT GGCAAGCATG TACAGAAGTC ATCTTCCTTA TTTCTCACTA CCCCCAGCTT CCCAGATGGG AAACTGAGGC 000720 000721 TCAGAGAAAT GACATAACTC AGCTGACAAA GGATCTGAGT GGGTCTGACC CGCAAGCCCA CCCTCTTCAC CTCATGCTGT 000800 000801 CTAAAACAAT TACAGACACC TCCCACGAGC AGGAAAGCTC TGGAAATGTC TTCTTGGAAA GCAAGCAGCT ACCCATGAAC 000880 000881 AGACTTCTCA AAGCTTTTGG CCTTGGCCTC CCAAGGTGCT GGGACTACAG GCGTGGGTCA CTGCACCTGG CCAAAGCTTT 000960 000961 TGTTTGCTTA AAGTGCTTTG TAAGTTTATA AGAGGAGGCT ACAGAACCCA GAAATCACCT ATGGATTTGA CCACGAGATG 001040 001041 CGCTGCTGAA TTCATGGTGG GAAATGCTGA TGATCTCTGA TGGAGGCTGC TGGGTGGCTG CTGCCCACAC CCTGACCTGT 001120 001121 CCTCCCCAGC TGGACGGGGG ACTTCTAGGA GGGGGAGGGT CCCCACTGAA GATGGACACA TGTCCTGTCA GAGTTTCTGA 001200 001201 GAAGCTCCAG CCCTTAGGCA GAATGGGACA AGGAGAAACA GACTTGGGTC TGTACTCGGG ACTGCAGAAG CCGAGCATGA 001280 001281 GGAGTTGTGG GGACAGTGCC CCTCCTTCAT CCCCACCTCC CAGCCCCCCA GTATCTCCTT CTCCCCCTGA TCCTTCCCTT 001360 001361 GATCAGGCCA GGGCCCTGTC ATTGTCCCAA CAAATGCCTA CCGCCAGTTC ATCGCACCTT GTTTTCTCTG ATGTCCTCGC 001440 001441 AATCACACAC CTTGTGCCCC TGAGCTGGGT ACACGATCCT TTGCAATGTG TGCTACGAGA ACTGTATTGC TAATAATAAA 001520 001521 GACAAAATTT AATGACTCCA CTGGCTGAGC TTCTGGTAGG TCCCAGGCAC GTTAGACAGA CTATTTCATT AATTCTCACC 001600 001601 TCGGCAATTT GAGGAAGGTC TTGCTGTCTC AGTATCCTGA GTCTTAGACA GGTTCAATGA CTTGCACAAG GTCACATAGC 001680 001681 TTTTAAGTGA CAGGGCCTGG CTGCCTTGGC TCTGAAGTGA GTTCTCTTTG CAACAACCTA CCCAGCTGAG CCCCTCCTTT 001760 001761 GTTTAGAGAA GGCTTCTCCT CTGAGCTGGG AAGATCCAAC TTTGACCCTC AATTCTCAGA TGACAGTGGT TCAGTCAGGC 001840 001841 AGGAACTAGC TGTACTAACT TGTAAACAAG TCACTTCTGC AAGGAGAGGC AGAGGCCAGT GCTTGCGCGA GCGTGACTGA 001920 001921 TAAAGGAGTG GGGCGAGGGC TGAGGACTGT CTGGCTCTAC CGATTTATGA TACTGAAAGT CATCAATCTT AAAGAGAGAT 002000 002001 CTGCATTCCC CAAGCTTTCT TCTCCCTGAG GGGCCTCTCC TATCTCTCGC CAATATTGTG GCTCCCCTCA GCCGCAGGGG 002080 002081 CAATCTTTCT GGTTTTCTCT TAGGTCCAAA CACGAACCAA ATAAAATCCT CTTTGCCCTT C |
Predicted Small Protein
Name | NONHSAT053635_smProtein_527:736 |
Length | 70 |
Molecular weight | 7516.6386 |
Aromaticity | 0.0724637681159 |
Instability index | 51.6188405797 |
Isoelectric point | 7.71417236328 |
Runs | 9 |
Runs residual | 0.0088965418281 |
Runs probability | 0.0463208306346 |
Amino acid sequence | MDNSLYPHLSLPPSASFCTPDPAPCCHLLCMAAGPRLSWDGGKHVQKSSSLFLTTPSFPD GKLRLREMT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLEEELLLLEEELLLLLLL LLEEEEELL |
PRMN | - |
PiMo | - |