Difference between revisions of "NONHSAT056456"

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sequence = <dnaseq>GGAAGAGGACGGACCTAAGATGGCGGCCTCCAGGGGGCTGGGAATAGCCGCTCATGTCGGCTAACGGAGCGGTGTGGGGCCGCGTGCGAAGCCGCCTCCGCGCCTTCCCCGAGCGGCTGGCCGCCTGCGGGGCCGAGGCCGCGGCGTACGGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGGACTTCTGCGCGCGGGAGTTCGAGGCCCTGCGGAGCTGCTTCGCCGCTGCGGTAGGTGGGCGCGGGCCCCTTCCCCCCTTCCCAGCCCTTCCCCTCCAAGAGCCAGCGGGCCCCGGCTTTCCTTTGCTTTCCCGTTGGTTCAAGGTTTGAGCGCCTGCCGCGTGCTTTAGACGCCGGCTGACAAAATCACCGAGCCATCGACGAGCCCGCGAAACCTCGGCCGTCCTGGGCTTGTCCCTGCATGTTTGTAAAGCGGGACTGGCACCAACCTCAGAAAGGATGGGAGATGTGTGCAAAAAAGCGCCTTGTAAAACGCGCCAAGAAGACGCTGGAGGGAGGCTGTTAGGAGGGACTCTGAGCTTCACACCTGTCTGCTGCCATGGGTGCAGAGCCCTAGTCCTGATGGCCCCTGGTGGCACATATCGAATGCCTAGGGCAGAAAGGAAGTGGGAATGGCGAAGATGTGACATTCCTCGGTGTTAGATCCTGTTTTTTCTTAACAAGTTGAGGCGTGGGTAGAGCAGGAATTGGTTTTCCAGCATTG</dnaseq>|
 
sequence = <dnaseq>GGAAGAGGACGGACCTAAGATGGCGGCCTCCAGGGGGCTGGGAATAGCCGCTCATGTCGGCTAACGGAGCGGTGTGGGGCCGCGTGCGAAGCCGCCTCCGCGCCTTCCCCGAGCGGCTGGCCGCCTGCGGGGCCGAGGCCGCGGCGTACGGCAGGTGCGTGCAGGCCTCCACGGCCCCGGGCGGCCGCCTGAGTAAGGACTTCTGCGCGCGGGAGTTCGAGGCCCTGCGGAGCTGCTTCGCCGCTGCGGTAGGTGGGCGCGGGCCCCTTCCCCCCTTCCCAGCCCTTCCCCTCCAAGAGCCAGCGGGCCCCGGCTTTCCTTTGCTTTCCCGTTGGTTCAAGGTTTGAGCGCCTGCCGCGTGCTTTAGACGCCGGCTGACAAAATCACCGAGCCATCGACGAGCCCGCGAAACCTCGGCCGTCCTGGGCTTGTCCCTGCATGTTTGTAAAGCGGGACTGGCACCAACCTCAGAAAGGATGGGAGATGTGTGCAAAAAAGCGCCTTGTAAAACGCGCCAAGAAGACGCTGGAGGGAGGCTGTTAGGAGGGACTCTGAGCTTCACACCTGTCTGCTGCCATGGGTGCAGAGCCCTAGTCCTGATGGCCCCTGGTGGCACATATCGAATGCCTAGGGCAGAAAGGAAGTGGGAATGGCGAAGATGTGACATTCCTCGGTGTTAGATCCTGTTTTTTCTTAACAAGTTGAGGCGTGGGTAGAGCAGGAATTGGTTTTCCAGCATTG</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG022986]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 22:29, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT056456

Source

NONCODE4.0

Same with

,

Classification

sense

Length

741 nt

Genomic location

chr17+:79213111..79215014

Exon number

3

Exons

79213111..79213247,79213368..79213743,79214787..79215014

Genome context

Sequence
000001 GGAAGAGGAC GGACCTAAGA TGGCGGCCTC CAGGGGGCTG GGAATAGCCG CTCATGTCGG CTAACGGAGC GGTGTGGGGC 000080
000081 CGCGTGCGAA GCCGCCTCCG CGCCTTCCCC GAGCGGCTGG CCGCCTGCGG GGCCGAGGCC GCGGCGTACG GCAGGTGCGT 000160
000161 GCAGGCCTCC ACGGCCCCGG GCGGCCGCCT GAGTAAGGAC TTCTGCGCGC GGGAGTTCGA GGCCCTGCGG AGCTGCTTCG 000240
000241 CCGCTGCGGT AGGTGGGCGC GGGCCCCTTC CCCCCTTCCC AGCCCTTCCC CTCCAAGAGC CAGCGGGCCC CGGCTTTCCT 000320
000321 TTGCTTTCCC GTTGGTTCAA GGTTTGAGCG CCTGCCGCGT GCTTTAGACG CCGGCTGACA AAATCACCGA GCCATCGACG 000400
000401 AGCCCGCGAA ACCTCGGCCG TCCTGGGCTT GTCCCTGCAT GTTTGTAAAG CGGGACTGGC ACCAACCTCA GAAAGGATGG 000480
000481 GAGATGTGTG CAAAAAAGCG CCTTGTAAAA CGCGCCAAGA AGACGCTGGA GGGAGGCTGT TAGGAGGGAC TCTGAGCTTC 000560
000561 ACACCTGTCT GCTGCCATGG GTGCAGAGCC CTAGTCCTGA TGGCCCCTGG TGGCACATAT CGAATGCCTA GGGCAGAAAG 000640
000641 GAAGTGGGAA TGGCGAAGAT GTGACATTCC TCGGTGTTAG ATCCTGTTTT TTCTTAACAA GTTGAGGCGT GGGTAGAGCA 000720
000721 GGAATTGGTT TTCCAGCATT G
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Predicted Small Protein

Name NONHSAT056456_smProtein_53:346
Length 98
Molecular weight 10248.7578
Aromaticity 0.103092783505
Instability index 65.7742268041
Isoelectric point 10.2909545898
Runs 10
Runs residual 0.0284459717449
Runs probability 0.0119413531178
Amino acid sequence MSANGAVWGRVRSRLRAFPERLAACGAEAAAYGRCVQASTAPGGRLSKDFCAREFEALRS
CFAAAVGGRGPLPPFPALPLQEPAGPGFPLLSRWFKV
Secondary structure LLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHHLLEEELLLLLLLLLLHHHHHHHHHHHHH
HHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEL
PRMN -
PiMo -