Difference between revisions of "NONHSAT060810"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ttactgcttcgtaggagttcttGAATActaacaaattattatgagcaatgttcaagcatggaaataatttttgaaaaaatgtacaggaacattcatcagtaacattttactatactttgtcatatacatctctgtatcatccatcaattcatctttttaaatgcattttgaagtaggttgcagatagcttacatatcattaattagagttcaaaatttggggctggaagatctaaggtggctcatcccctggctagcaatgtggtgctggtgagttggttactggttacggggctgcttgagtctcctcatggcatggcggatggcttctcctagagaaagagcaatagaagagaccaaggaggaagcttcagtgtgtcttatgacctagcctcagatgtcacatgcaacagtgctgtattgatcatatgggtcgtgtatgattcaatattggaggtggggtacacaggacaggaatatcaggtggcaagggtctttggtgagcattctgaaggctagtcaacacaCCCACCTTTCCTTCAGACCACCTCTTTTCATCAGCCCGGAATCTCTTTTTTTGTGCTGGAGTGCCTGATCTGATTGTAGCTGTTTGAGGCATCTGGAATTCATGGCCGGGTTTAGAACAACTTGGAAGGtctcctttccccctcttctctttcttttacccttctcccctctctcttcctctcAGCCTTACCCCCAACTCTAGTCTTTCTTTGCTTCTAGTGAGCGAGCAGGAGATGCTCTGAGAGTCAACTGGGAATGCAGCTGATAAGGGTCTGCTGGGTGCAGGAAATGTTGGAAGGTTTGCTTGCTGGGCTGTATCACCTCCTGTATTATGGGAGCTTAGAGTATTTGCCAGCTTGTCAGGACTACCATCGTCTTCCATGTTCTGAGACTGGAGTACCCAACATTCCCCTAGCAGGGGACACTTGGCTTGATAGGGCTCTATCAATCTATATTGTGAGGGTAGAGATACTCATATTGCAAGGGGAGGCTGCAGGAGTTGCCTGCTGGGGCTAAGATTATTCCTTGTGTTTGGGATAAAGGAGGGGTCACCGCAGGGGCAGTCAACTCATGTTGGGGGAGACGGGATTTGCATTCTGGGCTCCCCTCCTCGTTTATGTTAAGGGTGTTGCTTGCTGATGCTTCTATTAACTCTTACTTTGGGATAATGGGAAGAGAGATAGTTTTCTGGGGTATGAGTTTGTCACTTATGTTGTAGAATCTGGGGGGCTGCCTGTTGAGATTCTGACCATTGCTTGTTTTGGGTGTCATTGCTGGGGATACTTATTTATAGTCTTGGGAAGACAAGGGATGCATGTTGCAGCGGTAGTGGGTAAGAATGGTGGCATTTG</dnaseq>| | sequence = <dnaseq>ttactgcttcgtaggagttcttGAATActaacaaattattatgagcaatgttcaagcatggaaataatttttgaaaaaatgtacaggaacattcatcagtaacattttactatactttgtcatatacatctctgtatcatccatcaattcatctttttaaatgcattttgaagtaggttgcagatagcttacatatcattaattagagttcaaaatttggggctggaagatctaaggtggctcatcccctggctagcaatgtggtgctggtgagttggttactggttacggggctgcttgagtctcctcatggcatggcggatggcttctcctagagaaagagcaatagaagagaccaaggaggaagcttcagtgtgtcttatgacctagcctcagatgtcacatgcaacagtgctgtattgatcatatgggtcgtgtatgattcaatattggaggtggggtacacaggacaggaatatcaggtggcaagggtctttggtgagcattctgaaggctagtcaacacaCCCACCTTTCCTTCAGACCACCTCTTTTCATCAGCCCGGAATCTCTTTTTTTGTGCTGGAGTGCCTGATCTGATTGTAGCTGTTTGAGGCATCTGGAATTCATGGCCGGGTTTAGAACAACTTGGAAGGtctcctttccccctcttctctttcttttacccttctcccctctctcttcctctcAGCCTTACCCCCAACTCTAGTCTTTCTTTGCTTCTAGTGAGCGAGCAGGAGATGCTCTGAGAGTCAACTGGGAATGCAGCTGATAAGGGTCTGCTGGGTGCAGGAAATGTTGGAAGGTTTGCTTGCTGGGCTGTATCACCTCCTGTATTATGGGAGCTTAGAGTATTTGCCAGCTTGTCAGGACTACCATCGTCTTCCATGTTCTGAGACTGGAGTACCCAACATTCCCCTAGCAGGGGACACTTGGCTTGATAGGGCTCTATCAATCTATATTGTGAGGGTAGAGATACTCATATTGCAAGGGGAGGCTGCAGGAGTTGCCTGCTGGGGCTAAGATTATTCCTTGTGTTTGGGATAAAGGAGGGGTCACCGCAGGGGCAGTCAACTCATGTTGGGGGAGACGGGATTTGCATTCTGGGCTCCCCTCCTCGTTTATGTTAAGGGTGTTGCTTGCTGATGCTTCTATTAACTCTTACTTTGGGATAATGGGAAGAGAGATAGTTTTCTGGGGTATGAGTTTGTCACTTATGTTGTAGAATCTGGGGGGCTGCCTGTTGAGATTCTGACCATTGCTTGTTTTGGGTGTCATTGCTGGGGATACTTATTTATAGTCTTGGGAAGACAAGGGATGCATGTTGCAGCGGTAGTGGGTAAGAATGGTGGCATTTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG024634]][[Category:Transcripts]] |
Latest revision as of 22:44, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT060810 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1378 nt |
Genomic location |
chr19-:7097220..7098597 |
Exon number |
1 |
Exons |
7097220..7098597 |
Genome context |
|
Sequence |
000001 ttactgcttc gtaggagttc ttGAATActa acaaattatt atgagcaatg ttcaagcatg gaaataattt ttgaaaaaat 000080
000081 gtacaggaac attcatcagt aacattttac tatactttgt catatacatc tctgtatcat ccatcaattc atctttttaa 000160 000161 atgcattttg aagtaggttg cagatagctt acatatcatt aattagagtt caaaatttgg ggctggaaga tctaaggtgg 000240 000241 ctcatcccct ggctagcaat gtggtgctgg tgagttggtt actggttacg gggctgcttg agtctcctca tggcatggcg 000320 000321 gatggcttct cctagagaaa gagcaataga agagaccaag gaggaagctt cagtgtgtct tatgacctag cctcagatgt 000400 000401 cacatgcaac agtgctgtat tgatcatatg ggtcgtgtat gattcaatat tggaggtggg gtacacagga caggaatatc 000480 000481 aggtggcaag ggtctttggt gagcattctg aaggctagtc aacacaCCCA CCTTTCCTTC AGACCACCTC TTTTCATCAG 000560 000561 CCCGGAATCT CTTTTTTTGT GCTGGAGTGC CTGATCTGAT TGTAGCTGTT TGAGGCATCT GGAATTCATG GCCGGGTTTA 000640 000641 GAACAACTTG GAAGGtctcc tttccccctc ttctctttct tttacccttc tcccctctct cttcctctcA GCCTTACCCC 000720 000721 CAACTCTAGT CTTTCTTTGC TTCTAGTGAG CGAGCAGGAG ATGCTCTGAG AGTCAACTGG GAATGCAGCT GATAAGGGTC 000800 000801 TGCTGGGTGC AGGAAATGTT GGAAGGTTTG CTTGCTGGGC TGTATCACCT CCTGTATTAT GGGAGCTTAG AGTATTTGCC 000880 000881 AGCTTGTCAG GACTACCATC GTCTTCCATG TTCTGAGACT GGAGTACCCA ACATTCCCCT AGCAGGGGAC ACTTGGCTTG 000960 000961 ATAGGGCTCT ATCAATCTAT ATTGTGAGGG TAGAGATACT CATATTGCAA GGGGAGGCTG CAGGAGTTGC CTGCTGGGGC 001040 001041 TAAGATTATT CCTTGTGTTT GGGATAAAGG AGGGGTCACC GCAGGGGCAG TCAACTCATG TTGGGGGAGA CGGGATTTGC 001120 001121 ATTCTGGGCT CCCCTCCTCG TTTATGTTAA GGGTGTTGCT TGCTGATGCT TCTATTAACT CTTACTTTGG GATAATGGGA 001200 001201 AGAGAGATAG TTTTCTGGGG TATGAGTTTG TCACTTATGT TGTAGAATCT GGGGGGCTGC CTGTTGAGAT TCTGACCATT 001280 001281 GCTTGTTTTG GGTGTCATTG CTGGGGATAC TTATTTATAG TCTTGGGAAG ACAAGGGATG CATGTTGCAG CGGTAGTGGG 001360 001361 TAAGAATGGT GGCATTTG |
Predicted Small Protein
Name | NONHSAT060810_smProtein_782:1042 |
Length | 87 |
Molecular weight | 9653.1866 |
Aromaticity | 0.104651162791 |
Instability index | 49.2755813953 |
Isoelectric point | 4.62969970703 |
Runs | 11 |
Runs residual | 0.0117146824019 |
Runs probability | 0.042162483339 |
Amino acid sequence | MQLIRVCWVQEMLEGLLAGLYHLLYYGSLEYLPACQDYHRLPCSETGVPNIPLAGDTWLD RALSIYIVRVEILILQGEAAGVACWG |
Secondary structure | LLEEEEEHHHHHHHHHHHHHHHHHHHLLHHHLHHHHHHLLLLLLLLLLLLLLLLLLLHHH HHHHEEEEEEEEEEEELLLLLLLLLL |
PRMN | - |
PiMo | - |