Difference between revisions of "NONHSAT067051"

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sequence = <dnaseq>tataatacaataaatgtatatatacagttttatatataacaactattatacatataatacaattatatatataGCTAACATCAGGATAGGCTGGTTGAGGATTTATATGAATCTTTGCTAATTTTGCATGTTTAAAATTATTTCAACATAAAAAAATTATATGGGTCATGTAGTTTTTTGTGCAGTTTAATTCTAGGCACCATAGTTTCTGTTTTAATGGGTGTATTTTCTTCTTTCAAGGAATTGGGATAGTCTGTTGTATTAAAAACCTATTCATTTTTGTACATTAAGATTCTTCTggccaggcgcaatggctcaagcctataatcccagcacttgggaacctgaggcaggcagatcacctgaggtcaggagttcaagaccagcatgtccaacatggtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcatggtggcacatgcctgtaatcccagctacttgggaggctgaggaggagactcactagaactcaggaagcagaggttgcagtgagccaagactgcgccactgcactctggcctaagcaacagagggagactccatctcaaaaaaaaaaaaaGATTATTTCTCTAACTTACTGGTTTATCTTTTATAGCTTATTTCAGGTGATTTGTTGTGTTTGTCTATAGAGTAAAATAACATGTCTAATGAGTTATAATTTAATGTCCTTCCATTCAATCACTGTATTTCAAATTTATTCCAATATTTTGGAATAAGCTTCCAATATTTTAACTTAAATAGGGAAGGTCATACTTGGTATTTTCCTGACCTCAGCTGGAATGCCTTCATAGTGTTCACATGAACACATTTGGCCTGAGAGAGACTTATTATGCCGAGAATGTGTGTAACCCTTTTTACTTAGGAATTGTGGGTGGAGTTTTTCCCCCCGCCCAAGAATGATTGTTAATTTCCGTCCATCATTTTCCTTTGATTGTTCTTCATCTCGAAAACaaataataaaataataaaataaataaataaaaCTTACTGGTCTTCTCACCTATTTTCTTGCAGTGCCTTTAAGCAATGCTCTGCCA</dnaseq>|
 
sequence = <dnaseq>tataatacaataaatgtatatatacagttttatatataacaactattatacatataatacaattatatatataGCTAACATCAGGATAGGCTGGTTGAGGATTTATATGAATCTTTGCTAATTTTGCATGTTTAAAATTATTTCAACATAAAAAAATTATATGGGTCATGTAGTTTTTTGTGCAGTTTAATTCTAGGCACCATAGTTTCTGTTTTAATGGGTGTATTTTCTTCTTTCAAGGAATTGGGATAGTCTGTTGTATTAAAAACCTATTCATTTTTGTACATTAAGATTCTTCTggccaggcgcaatggctcaagcctataatcccagcacttgggaacctgaggcaggcagatcacctgaggtcaggagttcaagaccagcatgtccaacatggtgaaaccccatctctactaaaaatacaaaaaaaattagccaggcatggtggcacatgcctgtaatcccagctacttgggaggctgaggaggagactcactagaactcaggaagcagaggttgcagtgagccaagactgcgccactgcactctggcctaagcaacagagggagactccatctcaaaaaaaaaaaaaGATTATTTCTCTAACTTACTGGTTTATCTTTTATAGCTTATTTCAGGTGATTTGTTGTGTTTGTCTATAGAGTAAAATAACATGTCTAATGAGTTATAATTTAATGTCCTTCCATTCAATCACTGTATTTCAAATTTATTCCAATATTTTGGAATAAGCTTCCAATATTTTAACTTAAATAGGGAAGGTCATACTTGGTATTTTCCTGACCTCAGCTGGAATGCCTTCATAGTGTTCACATGAACACATTTGGCCTGAGAGAGACTTATTATGCCGAGAATGTGTGTAACCCTTTTTACTTAGGAATTGTGGGTGGAGTTTTTCCCCCCGCCCAAGAATGATTGTTAATTTCCGTCCATCATTTTCCTTTGATTGTTCTTCATCTCGAAAACaaataataaaataataaaataaataaataaaaCTTACTGGTCTTCTCACCTATTTTCTTGCAGTGCCTTTAAGCAATGCTCTGCCA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG026159]][[Category:Transcripts]]

Latest revision as of 23:00, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT067051

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1073 nt

Genomic location

chr19+:48760438..48761510

Exon number

1

Exons

48760438..48761510

Genome context

Sequence
000001 tataatacaa taaatgtata tatacagttt tatatataac aactattata catataatac aattatatat ataGCTAACA 000080
000081 TCAGGATAGG CTGGTTGAGG ATTTATATGA ATCTTTGCTA ATTTTGCATG TTTAAAATTA TTTCAACATA AAAAAATTAT 000160
000161 ATGGGTCATG TAGTTTTTTG TGCAGTTTAA TTCTAGGCAC CATAGTTTCT GTTTTAATGG GTGTATTTTC TTCTTTCAAG 000240
000241 GAATTGGGAT AGTCTGTTGT ATTAAAAACC TATTCATTTT TGTACATTAA GATTCTTCTg gccaggcgca atggctcaag 000320
000321 cctataatcc cagcacttgg gaacctgagg caggcagatc acctgaggtc aggagttcaa gaccagcatg tccaacatgg 000400
000401 tgaaacccca tctctactaa aaatacaaaa aaaattagcc aggcatggtg gcacatgcct gtaatcccag ctacttggga 000480
000481 ggctgaggag gagactcact agaactcagg aagcagaggt tgcagtgagc caagactgcg ccactgcact ctggcctaag 000560
000561 caacagaggg agactccatc tcaaaaaaaa aaaaaGATTA TTTCTCTAAC TTACTGGTTT ATCTTTTATA GCTTATTTCA 000640
000641 GGTGATTTGT TGTGTTTGTC TATAGAGTAA AATAACATGT CTAATGAGTT ATAATTTAAT GTCCTTCCAT TCAATCACTG 000720
000721 TATTTCAAAT TTATTCCAAT ATTTTGGAAT AAGCTTCCAA TATTTTAACT TAAATAGGGA AGGTCATACT TGGTATTTTC 000800
000801 CTGACCTCAG CTGGAATGCC TTCATAGTGT TCACATGAAC ACATTTGGCC TGAGAGAGAC TTATTATGCC GAGAATGTGT 000880
000881 GTAACCCTTT TTACTTAGGA ATTGTGGGTG GAGTTTTTCC CCCCGCCCAA GAATGATTGT TAATTTCCGT CCATCATTTT 000960
000961 CCTTTGATTG TTCTTCATCT CGAAAACaaa taataaaata ataaaataaa taaataaaaC TTACTGGTCT TCTCACCTAT 001040
001041 TTTCTTGCAG TGCCTTTAAG CAATGCTCTG CCA
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Predicted Small Protein

Name NONHSAT067051_smProtein_932:1000
Length 23
Molecular weight 2591.0163
Aromaticity 0.136363636364
Instability index 55.1227272727
Isoelectric point 10.0521850586
Runs 6
Runs residual 0.0363636363636
Runs probability 0.0233174350822
Amino acid sequence MIVNFRPSFSFDCSSSRKQIIK
Secondary structure LEEEELLLLLLLLLLLHHHEEL
PRMN -
PiMo -