Difference between revisions of "NONHSAT069067"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>ACCCACTCACTGGTGAGCTCCGCAAGAGTGTACTTCTCTCCGTCCCTGGAGCGCCACGGCGTGCTGGTGCATAGTAAGCATCTGTCCATGTCTGTCCAGTTGAATTTCTTGAGAGTCATTTGACCTTCTCAGCAGCTCTGGAGAACCCACATTGACCAGAGACTTTGCAGCCAGCTCACCCCTCCAAATCCCCGCCCTGGAGTCCCTGACCCAGGAATTTCTGCATCAGGCTGCTCAAACCTGAATTTGACAAAATTTCAAAGCGCTGTATCTTTATGTTGATAAGACAACGGATAAAGTGCCATACTTGGAACCTAGATCACTCAATGTTGCCTGTAGCTGAGTCCACTTCTGTCACTCACCCTGCATTGCCCTGCCAGGAGCAAGGGAGAGAAAGCCAGCCAGAAGGCATGGGCATGGGCTCAAATCGGCTTCTCCTGTGGCCACTGTGAAAGTTGATCATACAAAGGTCACTGTTGTCATAGCCAAGCAGAGTTATGAGACCACAGGAAAAAGCACTTGGACCACGTAACATTGCTCCAAGAGTATAACTGTCTCCAACCCTGGCTGCTGGAACAAGTGTTGCAACCTGAAACAGGTTTGATCTAATAGCTACAGAAACAACCTGCGGAAATCTAAGACTAGTTTCACCCACTCACCAATCAGAGCTTGCCGGATCCCCAAAACGTTGCTAGTGCTAATGAACTTGCTTTCCTAACAATCCATAACATTTCTCATTTTTATGAAACCTACAACCTTCTCTTTGCTCTTTGGACATACTGAAGACCACCCAGTCTGTGTGTATGCCCCAAACTGAAATTCTTGCTCCCCAAATAAAACATTTTAAACTTAGAGATTTGTCTGTATATTTTATTTGACTTTGACAACACCAGGGGCTCCGGCACAAATCTCCTCCTTCAAGCCCTTTTCTACACAGTCCCGTGGGTCTACCCTGAAAGAAGCCTGATGACGGCTCAAAGACACAATGTTACTGGGAGGTAAATTCAGGATTACTTGACCGAATGGCCCACCCGAGGTCACGGAGGCTGCTGGAGGAACAGAAAATGGTCTTCACCAAGTGAAGCATTGTCGGTCTTGGCCTGTGTCTGGCTGGAGAATGTTAAAATTCTGGGGACACAACAGAAAAGGCACAGTTGTGGGGACCAGGCCAATGTCAGCGTGAGAACTGGCTCCATCCCCCTCCCATGAACCAGCTCTGCGGCCAAGGCAGGTCTGCATTTCCTGGTCTGTGACACGGAGTCAGTAACATTGCCTACTTCCCGGGGCTATTTCCAGAGAAGTGAGGGAATGGGTGTGGAACGCCTGCCATCTGCGGAGCCCCGCATGAAACGTCTCTGTCTTTCCAGCCAGCCCTGAGCCAGGGAAGGGACTGGAAGCGCAGCGGGTGGCTGAGGCGGGCTTTCGGCAGCTTACCCCCAGCCTTGCCCCTCCCCGCCTGCTGAAACACAATCTATGGTTGTCGCCTTCCTGGAGATGTTAGCCGCCCCCTCCAGAGGTGGTTCCAAATCTACTTCTCATTTGGCTGATTTAGGAGAGGCTGCGAATCGGTCGCTATGGTTTCTTTATTTTCTCCTGACAGCTTAGGAATCATTTTTCCAATTATTCCCAGGGGAGGAAAAAGAAGTGGAGGAAGCCAGTGTTTGGAATGAGGGGAAGCTCACGGATCTGAAATGCAACCTCTTCTGCAGGAGACCCGGCACAGCTACCGGGACCCATCACCTCCCTGTAGGAACCCCGCCCAGCCCCCTCCAGCCAGCCCTGCGTGGTTGTGGCCCCACTGCAGAAACGCCTCCGCTTAACACTCCAGCCTCTCTTCTATTCGGTCAGGCCACAGCTGCTGACTTTGTGCCTGCTGTAGCAACCCCGAGCCCCCAAATAAACCCTCCCTCCCAGGGTGGCCTCTCTACGGGGGGAGACAGACGGTG</dnaseq>| | sequence = <dnaseq>ACCCACTCACTGGTGAGCTCCGCAAGAGTGTACTTCTCTCCGTCCCTGGAGCGCCACGGCGTGCTGGTGCATAGTAAGCATCTGTCCATGTCTGTCCAGTTGAATTTCTTGAGAGTCATTTGACCTTCTCAGCAGCTCTGGAGAACCCACATTGACCAGAGACTTTGCAGCCAGCTCACCCCTCCAAATCCCCGCCCTGGAGTCCCTGACCCAGGAATTTCTGCATCAGGCTGCTCAAACCTGAATTTGACAAAATTTCAAAGCGCTGTATCTTTATGTTGATAAGACAACGGATAAAGTGCCATACTTGGAACCTAGATCACTCAATGTTGCCTGTAGCTGAGTCCACTTCTGTCACTCACCCTGCATTGCCCTGCCAGGAGCAAGGGAGAGAAAGCCAGCCAGAAGGCATGGGCATGGGCTCAAATCGGCTTCTCCTGTGGCCACTGTGAAAGTTGATCATACAAAGGTCACTGTTGTCATAGCCAAGCAGAGTTATGAGACCACAGGAAAAAGCACTTGGACCACGTAACATTGCTCCAAGAGTATAACTGTCTCCAACCCTGGCTGCTGGAACAAGTGTTGCAACCTGAAACAGGTTTGATCTAATAGCTACAGAAACAACCTGCGGAAATCTAAGACTAGTTTCACCCACTCACCAATCAGAGCTTGCCGGATCCCCAAAACGTTGCTAGTGCTAATGAACTTGCTTTCCTAACAATCCATAACATTTCTCATTTTTATGAAACCTACAACCTTCTCTTTGCTCTTTGGACATACTGAAGACCACCCAGTCTGTGTGTATGCCCCAAACTGAAATTCTTGCTCCCCAAATAAAACATTTTAAACTTAGAGATTTGTCTGTATATTTTATTTGACTTTGACAACACCAGGGGCTCCGGCACAAATCTCCTCCTTCAAGCCCTTTTCTACACAGTCCCGTGGGTCTACCCTGAAAGAAGCCTGATGACGGCTCAAAGACACAATGTTACTGGGAGGTAAATTCAGGATTACTTGACCGAATGGCCCACCCGAGGTCACGGAGGCTGCTGGAGGAACAGAAAATGGTCTTCACCAAGTGAAGCATTGTCGGTCTTGGCCTGTGTCTGGCTGGAGAATGTTAAAATTCTGGGGACACAACAGAAAAGGCACAGTTGTGGGGACCAGGCCAATGTCAGCGTGAGAACTGGCTCCATCCCCCTCCCATGAACCAGCTCTGCGGCCAAGGCAGGTCTGCATTTCCTGGTCTGTGACACGGAGTCAGTAACATTGCCTACTTCCCGGGGCTATTTCCAGAGAAGTGAGGGAATGGGTGTGGAACGCCTGCCATCTGCGGAGCCCCGCATGAAACGTCTCTGTCTTTCCAGCCAGCCCTGAGCCAGGGAAGGGACTGGAAGCGCAGCGGGTGGCTGAGGCGGGCTTTCGGCAGCTTACCCCCAGCCTTGCCCCTCCCCGCCTGCTGAAACACAATCTATGGTTGTCGCCTTCCTGGAGATGTTAGCCGCCCCCTCCAGAGGTGGTTCCAAATCTACTTCTCATTTGGCTGATTTAGGAGAGGCTGCGAATCGGTCGCTATGGTTTCTTTATTTTCTCCTGACAGCTTAGGAATCATTTTTCCAATTATTCCCAGGGGAGGAAAAAGAAGTGGAGGAAGCCAGTGTTTGGAATGAGGGGAAGCTCACGGATCTGAAATGCAACCTCTTCTGCAGGAGACCCGGCACAGCTACCGGGACCCATCACCTCCCTGTAGGAACCCCGCCCAGCCCCCTCCAGCCAGCCCTGCGTGGTTGTGGCCCCACTGCAGAAACGCCTCCGCTTAACACTCCAGCCTCTCTTCTATTCGGTCAGGCCACAGCTGCTGACTTTGTGCCTGCTGTAGCAACCCCGAGCCCCCAAATAAACCCTCCCTCCCAGGGTGGCCTCTCTACGGGGGGAGACAGACGGTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG026969]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:11, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT069067 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1946 nt |
| Genomic location |
chr2-:9897625..9910470 |
| Exon number |
2 |
| Exons |
9897625..9899428,9910328..9910470 |
| Genome context |
|
| Sequence |
000001 ACCCACTCAC TGGTGAGCTC CGCAAGAGTG TACTTCTCTC CGTCCCTGGA GCGCCACGGC GTGCTGGTGC ATAGTAAGCA 000080
000081 TCTGTCCATG TCTGTCCAGT TGAATTTCTT GAGAGTCATT TGACCTTCTC AGCAGCTCTG GAGAACCCAC ATTGACCAGA 000160 000161 GACTTTGCAG CCAGCTCACC CCTCCAAATC CCCGCCCTGG AGTCCCTGAC CCAGGAATTT CTGCATCAGG CTGCTCAAAC 000240 000241 CTGAATTTGA CAAAATTTCA AAGCGCTGTA TCTTTATGTT GATAAGACAA CGGATAAAGT GCCATACTTG GAACCTAGAT 000320 000321 CACTCAATGT TGCCTGTAGC TGAGTCCACT TCTGTCACTC ACCCTGCATT GCCCTGCCAG GAGCAAGGGA GAGAAAGCCA 000400 000401 GCCAGAAGGC ATGGGCATGG GCTCAAATCG GCTTCTCCTG TGGCCACTGT GAAAGTTGAT CATACAAAGG TCACTGTTGT 000480 000481 CATAGCCAAG CAGAGTTATG AGACCACAGG AAAAAGCACT TGGACCACGT AACATTGCTC CAAGAGTATA ACTGTCTCCA 000560 000561 ACCCTGGCTG CTGGAACAAG TGTTGCAACC TGAAACAGGT TTGATCTAAT AGCTACAGAA ACAACCTGCG GAAATCTAAG 000640 000641 ACTAGTTTCA CCCACTCACC AATCAGAGCT TGCCGGATCC CCAAAACGTT GCTAGTGCTA ATGAACTTGC TTTCCTAACA 000720 000721 ATCCATAACA TTTCTCATTT TTATGAAACC TACAACCTTC TCTTTGCTCT TTGGACATAC TGAAGACCAC CCAGTCTGTG 000800 000801 TGTATGCCCC AAACTGAAAT TCTTGCTCCC CAAATAAAAC ATTTTAAACT TAGAGATTTG TCTGTATATT TTATTTGACT 000880 000881 TTGACAACAC CAGGGGCTCC GGCACAAATC TCCTCCTTCA AGCCCTTTTC TACACAGTCC CGTGGGTCTA CCCTGAAAGA 000960 000961 AGCCTGATGA CGGCTCAAAG ACACAATGTT ACTGGGAGGT AAATTCAGGA TTACTTGACC GAATGGCCCA CCCGAGGTCA 001040 001041 CGGAGGCTGC TGGAGGAACA GAAAATGGTC TTCACCAAGT GAAGCATTGT CGGTCTTGGC CTGTGTCTGG CTGGAGAATG 001120 001121 TTAAAATTCT GGGGACACAA CAGAAAAGGC ACAGTTGTGG GGACCAGGCC AATGTCAGCG TGAGAACTGG CTCCATCCCC 001200 001201 CTCCCATGAA CCAGCTCTGC GGCCAAGGCA GGTCTGCATT TCCTGGTCTG TGACACGGAG TCAGTAACAT TGCCTACTTC 001280 001281 CCGGGGCTAT TTCCAGAGAA GTGAGGGAAT GGGTGTGGAA CGCCTGCCAT CTGCGGAGCC CCGCATGAAA CGTCTCTGTC 001360 001361 TTTCCAGCCA GCCCTGAGCC AGGGAAGGGA CTGGAAGCGC AGCGGGTGGC TGAGGCGGGC TTTCGGCAGC TTACCCCCAG 001440 001441 CCTTGCCCCT CCCCGCCTGC TGAAACACAA TCTATGGTTG TCGCCTTCCT GGAGATGTTA GCCGCCCCCT CCAGAGGTGG 001520 001521 TTCCAAATCT ACTTCTCATT TGGCTGATTT AGGAGAGGCT GCGAATCGGT CGCTATGGTT TCTTTATTTT CTCCTGACAG 001600 001601 CTTAGGAATC ATTTTTCCAA TTATTCCCAG GGGAGGAAAA AGAAGTGGAG GAAGCCAGTG TTTGGAATGA GGGGAAGCTC 001680 001681 ACGGATCTGA AATGCAACCT CTTCTGCAGG AGACCCGGCA CAGCTACCGG GACCCATCAC CTCCCTGTAG GAACCCCGCC 001760 001761 CAGCCCCCTC CAGCCAGCCC TGCGTGGTTG TGGCCCCACT GCAGAAACGC CTCCGCTTAA CACTCCAGCC TCTCTTCTAT 001840 001841 TCGGTCAGGC CACAGCTGCT GACTTTGTGC CTGCTGTAGC AACCCCGAGC CCCCAAATAA ACCCTCCCTC CCAGGGTGGC 001920 001921 CTCTCTACGG GGGGAGACAG ACGGTG |
Predicted Small Protein
| Name | NONHSAT069067_smProtein_275:451 |
| Length | 59 |
| Molecular weight | 6582.5765 |
| Aromaticity | 0.0344827586207 |
| Instability index | 51.2672413793 |
| Isoelectric point | 6.81024169922 |
| Runs | 8 |
| Runs residual | 0.0186623721106 |
| Runs probability | 0.0 |
| Amino acid sequence | MLIRQRIKCHTWNLDHSMLPVAESTSVTHPALPCQEQGRESQPEGMGMGSNRLLLWPL |
| Secondary structure | LLLHHHEELEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLL |
| PRMN | - |
| PiMo | - |
