Difference between revisions of "NONHSAT069528"

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sequence = <dnaseq>TGGGAGACTCAAAACCCTGTTCAACTCTCTCTGGGCTAGCTGCTCCCCTCCCCAAGAGGATTTCTCTCCAGAGCTGGTATCATCGCTTAATGATGTTCCACCAACAAGGGGAAGATTCAGCCATGTCTTCCTAGGATCCAGCATCCAAACCTGGACCAAAGTCCTCGGATCCTCAGCAATGGGGGTGCATCTGGTGATGGTGTTCATGCTAAATTTGTGCCAAGAGACACCTGTACTTGTGGGAGAATTAATATTTCACTTCTGTTTAGGTTTCTTTTCTGGGAGCTGCTATCACTGAATACATAAAGAAATTGAGCCTATATGATTTCAATCTTCACCTTCTGATGCTGATGAAACAGGATTCTATGCAGAGAAAATCCTCTCCAGTCAAGTAATTGCATCCATTTCATCTTCCCAGCCCTCCTCTAGATGGGAGGTGGAGGTGTGTGTACCAATCTCTTAATTCAGAAATGAGACAAGAGGAGGAAAAAGGAGTTCCGGAGGTGTGTGATCCAAGTCTGGCTGCAGGCTATGGACATTCCAGGAGGGAGACTCCATCAGAGAAGTGGAGCTGGAGTTGGGTGTTAGAGGGTAAAGGGAGGGTTTGAACAGGCAAGGGATGGGGGAGGAGTGCCTTACAGTGGGAGAGGGAGAGGCTGCTTGAAAAAGCATAGAGCTGTGAGTGAGCATGCGTGCCCAAGGAGAGGGAGCCAGGCACTGCCAGGGTGCAGGTGGGGCAGACTGGCTAGGTGTGTGGCCAGGGTGTGGAAGG</dnaseq>|
 
sequence = <dnaseq>TGGGAGACTCAAAACCCTGTTCAACTCTCTCTGGGCTAGCTGCTCCCCTCCCCAAGAGGATTTCTCTCCAGAGCTGGTATCATCGCTTAATGATGTTCCACCAACAAGGGGAAGATTCAGCCATGTCTTCCTAGGATCCAGCATCCAAACCTGGACCAAAGTCCTCGGATCCTCAGCAATGGGGGTGCATCTGGTGATGGTGTTCATGCTAAATTTGTGCCAAGAGACACCTGTACTTGTGGGAGAATTAATATTTCACTTCTGTTTAGGTTTCTTTTCTGGGAGCTGCTATCACTGAATACATAAAGAAATTGAGCCTATATGATTTCAATCTTCACCTTCTGATGCTGATGAAACAGGATTCTATGCAGAGAAAATCCTCTCCAGTCAAGTAATTGCATCCATTTCATCTTCCCAGCCCTCCTCTAGATGGGAGGTGGAGGTGTGTGTACCAATCTCTTAATTCAGAAATGAGACAAGAGGAGGAAAAAGGAGTTCCGGAGGTGTGTGATCCAAGTCTGGCTGCAGGCTATGGACATTCCAGGAGGGAGACTCCATCAGAGAAGTGGAGCTGGAGTTGGGTGTTAGAGGGTAAAGGGAGGGTTTGAACAGGCAAGGGATGGGGGAGGAGTGCCTTACAGTGGGAGAGGGAGAGGCTGCTTGAAAAAGCATAGAGCTGTGAGTGAGCATGCGTGCCCAAGGAGAGGGAGCCAGGCACTGCCAGGGTGCAGGTGGGGCAGACTGGCTAGGTGTGTGGCCAGGGTGTGGAAGG</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG027204]][[Category:Transcripts]]

Latest revision as of 23:13, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT069528

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

772 nt

Genomic location

chr2-:23250409..23421793

Exon number

3

Exons

23250409..23250809,23313618..23313874,23421680..23421793

Genome context

Sequence
000001 TGGGAGACTC AAAACCCTGT TCAACTCTCT CTGGGCTAGC TGCTCCCCTC CCCAAGAGGA TTTCTCTCCA GAGCTGGTAT 000080
000081 CATCGCTTAA TGATGTTCCA CCAACAAGGG GAAGATTCAG CCATGTCTTC CTAGGATCCA GCATCCAAAC CTGGACCAAA 000160
000161 GTCCTCGGAT CCTCAGCAAT GGGGGTGCAT CTGGTGATGG TGTTCATGCT AAATTTGTGC CAAGAGACAC CTGTACTTGT 000240
000241 GGGAGAATTA ATATTTCACT TCTGTTTAGG TTTCTTTTCT GGGAGCTGCT ATCACTGAAT ACATAAAGAA ATTGAGCCTA 000320
000321 TATGATTTCA ATCTTCACCT TCTGATGCTG ATGAAACAGG ATTCTATGCA GAGAAAATCC TCTCCAGTCA AGTAATTGCA 000400
000401 TCCATTTCAT CTTCCCAGCC CTCCTCTAGA TGGGAGGTGG AGGTGTGTGT ACCAATCTCT TAATTCAGAA ATGAGACAAG 000480
000481 AGGAGGAAAA AGGAGTTCCG GAGGTGTGTG ATCCAAGTCT GGCTGCAGGC TATGGACATT CCAGGAGGGA GACTCCATCA 000560
000561 GAGAAGTGGA GCTGGAGTTG GGTGTTAGAG GGTAAAGGGA GGGTTTGAAC AGGCAAGGGA TGGGGGAGGA GTGCCTTACA 000640
000641 GTGGGAGAGG GAGAGGCTGC TTGAAAAAGC ATAGAGCTGT GAGTGAGCAT GCGTGCCCAA GGAGAGGGAG CCAGGCACTG 000720
000721 CCAGGGTGCA GGTGGGGCAG ACTGGCTAGG TGTGTGGCCA GGGTGTGGAA GG
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Predicted Small Protein

Name NONHSAT069528_smProtein_470:607
Length 46
Molecular weight 5145.6582
Aromaticity 0.0888888888889
Instability index 62.1022222222
Isoelectric point 5.70599365234
Runs 7
Runs residual 0.00669191919192
Runs probability 0.0439473086532
Amino acid sequence MRQEEEKGVPEVCDPSLAAGYGHSRRETPSEKWSWSWVLEGKGRV
Secondary structure LLLHHHLLLLEELLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLL
PRMN -
PiMo -