Difference between revisions of "NONHSAT072900"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>AACCTAACCTCTGAAGTCATGCCATGTCACTTCTGCTGAGTTCCATTAATTAAAAATGAGTCACTGAGGGCCAGGCACAGTGGCTCATGCCTGTAATCTCAGTATTTTGGGAGGCCGAGGTGGGCAGATCACTTAAAGTCAGAAAAGTAAGTATATTATCAAATGCAGAATAAGGTAAAACTTTGAGTGTCATGTAAATAACATATCTCTAATAGAAAAGATAAAACGCAGGTAAAAGTAGTAACAGTATAGTTTTGTACGTGATTGAATTTATCAGCTTAAATAACCTGTCATAACTATAATAAGTTTTATGTAGACTTTAAGGTAAGCAGAAAGCAAAAATGTATAGGAGATCTAAAAAAAATACAAAGAGGAAGGAATCAAAGCATACAACTACAGAAAATAGATATGAGATGTTGAAGTCCTTAAACAGGTTGGTGGATTTGTCTATTTGTCTATTTGTCCTTTCAACTCTTAGTTTTTGTTTAGTGTATTTTGAGGCTCTGTTGTGTGCTTGTATGTATGCACACATTTTTAATAATTTATTTCTATTTTTTTACTGTTACATAATCTCTCTTTTTTTCTATAGGGATATTCTTTGTTTTGAATTTACTTTATTCTGACATTAATATGTCACTTTTTCATTTTTAATTATTGTTTATATAATCAGTTCTT</dnaseq>| | sequence = <dnaseq>AACCTAACCTCTGAAGTCATGCCATGTCACTTCTGCTGAGTTCCATTAATTAAAAATGAGTCACTGAGGGCCAGGCACAGTGGCTCATGCCTGTAATCTCAGTATTTTGGGAGGCCGAGGTGGGCAGATCACTTAAAGTCAGAAAAGTAAGTATATTATCAAATGCAGAATAAGGTAAAACTTTGAGTGTCATGTAAATAACATATCTCTAATAGAAAAGATAAAACGCAGGTAAAAGTAGTAACAGTATAGTTTTGTACGTGATTGAATTTATCAGCTTAAATAACCTGTCATAACTATAATAAGTTTTATGTAGACTTTAAGGTAAGCAGAAAGCAAAAATGTATAGGAGATCTAAAAAAAATACAAAGAGGAAGGAATCAAAGCATACAACTACAGAAAATAGATATGAGATGTTGAAGTCCTTAAACAGGTTGGTGGATTTGTCTATTTGTCTATTTGTCCTTTCAACTCTTAGTTTTTGTTTAGTGTATTTTGAGGCTCTGTTGTGTGCTTGTATGTATGCACACATTTTTAATAATTTATTTCTATTTTTTTACTGTTACATAATCTCTCTTTTTTTCTATAGGGATATTCTTTGTTTTGAATTTACTTTATTCTGACATTAATATGTCACTTTTTCATTTTTAATTATTGTTTATATAATCAGTTCTT</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:Transcripts]] |
Latest revision as of 23:29, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072900 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
675 nt |
Genomic location |
chr2-:104790463..104834343 |
Exon number |
4 |
Exons |
104790463..104790733,104795323..104795508,104795599..104795674,104834202..104834343 |
Genome context |
|
Sequence |
000001 AACCTAACCT CTGAAGTCAT GCCATGTCAC TTCTGCTGAG TTCCATTAAT TAAAAATGAG TCACTGAGGG CCAGGCACAG 000080
000081 TGGCTCATGC CTGTAATCTC AGTATTTTGG GAGGCCGAGG TGGGCAGATC ACTTAAAGTC AGAAAAGTAA GTATATTATC 000160 000161 AAATGCAGAA TAAGGTAAAA CTTTGAGTGT CATGTAAATA ACATATCTCT AATAGAAAAG ATAAAACGCA GGTAAAAGTA 000240 000241 GTAACAGTAT AGTTTTGTAC GTGATTGAAT TTATCAGCTT AAATAACCTG TCATAACTAT AATAAGTTTT ATGTAGACTT 000320 000321 TAAGGTAAGC AGAAAGCAAA AATGTATAGG AGATCTAAAA AAAATACAAA GAGGAAGGAA TCAAAGCATA CAACTACAGA 000400 000401 AAATAGATAT GAGATGTTGA AGTCCTTAAA CAGGTTGGTG GATTTGTCTA TTTGTCTATT TGTCCTTTCA ACTCTTAGTT 000480 000481 TTTGTTTAGT GTATTTTGAG GCTCTGTTGT GTGCTTGTAT GTATGCACAC ATTTTTAATA ATTTATTTCT ATTTTTTTAC 000560 000561 TGTTACATAA TCTCTCTTTT TTTCTATAGG GATATTCTTT GTTTTGAATT TACTTTATTC TGACATTAAT ATGTCACTTT 000640 000641 TTCATTTTTA ATTATTGTTT ATATAATCAG TTCTT |
Predicted Small Protein
Name | NONHSAT072900_smProtein_341:622 |
Length | 94 |
Molecular weight | 11355.3863 |
Aromaticity | 0.204301075269 |
Instability index | 51.0066666667 |
Isoelectric point | 8.97015380859 |
Runs | 6 |
Runs residual | 0.0664078056551 |
Runs probability | 0.0172967084732 |
Amino acid sequence | MYRRSKKNTKRKESKHTTTENRYEMLKSLNRLVDLSICLFVLSTLSFCLVYFEALLCACM YAHIFNNLFLFFYCYIISLFFYRDILCFEFTLF |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHH HHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooTTTTTT TTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiii |