Difference between revisions of "NONHSAT073727"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>accaatatataccactcttaatggcttcccattaaactttgagtaaagactttatggagcctacataaggccatgactacctggctcttattttcctcctcatcctcatctcaccaactcactctccactcctatacccctcactccTTCCCCCTCCTCTCTCTGAGCTCCAGACTCCCAATTACCTACTTCCACCCTTTTTGACCCCCAGGGACTTATCTCAGCCTGGAATTTTCCCTCTTTGCTCTCCACTGAACTGTCCACTCCCAGTCTAAGACATGTGCTTATGTCACACGCCCTTACCGTGCTTATCTCAGTTTGTAATTATCTACTCATTTAGAAAAGTGTTGATGAAGGTCTTCACTGTCAGCTTTCAGGATAGCAGGAATCATAGCTGATTTTACTTACTTAACGGGGTTTCATTCTTTGTAACtttttttttttttg</dnaseq>| | sequence = <dnaseq>accaatatataccactcttaatggcttcccattaaactttgagtaaagactttatggagcctacataaggccatgactacctggctcttattttcctcctcatcctcatctcaccaactcactctccactcctatacccctcactccTTCCCCCTCCTCTCTCTGAGCTCCAGACTCCCAATTACCTACTTCCACCCTTTTTGACCCCCAGGGACTTATCTCAGCCTGGAATTTTCCCTCTTTGCTCTCCACTGAACTGTCCACTCCCAGTCTAAGACATGTGCTTATGTCACACGCCCTTACCGTGCTTATCTCAGTTTGTAATTATCTACTCATTTAGAAAAGTGTTGATGAAGGTCTTCACTGTCAGCTTTCAGGATAGCAGGAATCATAGCTGATTTTACTTACTTAACGGGGTTTCATTCTTTGTAACtttttttttttttg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG028986]][[Category:Transcripts]] |
Latest revision as of 23:31, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT073727 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
447 nt |
| Genomic location |
chr2-:113546224..113546670 |
| Exon number |
1 |
| Exons |
113546224..113546670 |
| Genome context |
|
| Sequence |
000001 accaatatat accactctta atggcttccc attaaacttt gagtaaagac tttatggagc ctacataagg ccatgactac 000080
000081 ctggctctta ttttcctcct catcctcatc tcaccaactc actctccact cctatacccc tcactccTTC CCCCTCCTCT 000160 000161 CTCTGAGCTC CAGACTCCCA ATTACCTACT TCCACCCTTT TTGACCCCCA GGGACTTATC TCAGCCTGGA ATTTTCCCTC 000240 000241 TTTGCTCTCC ACTGAACTGT CCACTCCCAG TCTAAGACAT GTGCTTATGT CACACGCCCT TACCGTGCTT ATCTCAGTTT 000320 000321 GTAATTATCT ACTCATTTAG AAAAGTGTTG ATGAAGGTCT TCACTGTCAG CTTTCAGGAT AGCAGGAATC ATAGCTGATT 000400 000401 TTACTTACTT AACGGGGTTT CATTCTTTGT AACttttttt ttttttg |
Predicted Small Protein
| Name | NONHSAT073727_smProtein_278:397 |
| Length | 40 |
| Molecular weight | 4577.4417 |
| Aromaticity | 0.128205128205 |
| Instability index | 45.6820512821 |
| Isoelectric point | 9.09979248047 |
| Runs | 7 |
| Runs residual | 0.0107466063348 |
| Runs probability | 0.0906452671159 |
| Amino acid sequence | MCLCHTPLPCLSQFVIIYSFRKVLMKVFTVSFQDSRNHS |
| Secondary structure | LEELLLLLLLLLLEEEEEHHHHHHHEEEEEEEEELLLLL |
| PRMN | LLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
| PiMo | ooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii |
