Difference between revisions of "NONHSAT074279"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGCGGAGGGAAGTCAGGCTCTTCCACGTTCCCGTATTTTCCTGTGGAGCTGCTCAGTGCCCGGCTTAGAGGACCAGGAATGGGTAATCACCAGCCGTACGCTGGAGGCTGGAGCCGCTACACCGTGGCTCGCCTCGCTGCGACTGGTGGTAACCGCGACCGAGACGGCAGTGCGGCGGAAGCGATACATTTTATACACAGATACAATTTTATTGTAACACATTAAGAAAAACAGCTTTGTAATTTTTTATTTAAAAATATTGGCCTGGCGCGGTGGCTCATGCCTGTAATCATAGCATTATGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAGAAATGAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCTGAGATGGCACCACTGGACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAGAAAACTCAAGAATGACATGGCAGTGGTTTGGAAATCCGAGAGTGAGAGAGACATCCAGGCTTTGCCGCAAGCCTCACCAGAACCTCCCTGGGTGTGAAGAGTCCTGTTCGGGAGCAGGGCTGTGAGGCGGGGCAGGCCAGGGCTTGTCTGGGTCACAGGCACCAACCCCTTCCTCAGGTCGGTGCACCACTGCGTGACCTCCAGGCAGCCACAGCCTGGAAAAGCACTCGGTTACCACCTTGCTCAACACCTGTGCCCGGAGCATCCACAAGGCCTGCCTCGGCTGCTTAGCCAGGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACGCATGCCTCCTGTCAGACACTTCTAGGTGTTGGCGTCCATGGAGAGCCTGGAGTTAGGAGAACACAGAGGACATAGGAAACCCTTCAAACACACATCGGATTCTCTGCTCACAGTTTTGGGTTCAGGCTGTGCTGCTTTGGGCAGGACTCGTCACTGTGTCCCCCACTCCATGAAACTGGGCCTGCTGTCCTGTTAGGATGCTGTAAGCCCCCGGGCCTGGGCTGTCCTTTCTGACGCACTGTCCCATTCCTTGGCCTGGTTCATCCCCAGCTTCCTGGCAAAGTTCTGCTCCCTGAAGCAGGAAGAGGCTGAGATTAATGCCAACGAAGTGGGGCCGTGGGCCTGGGAAGACTGTGTGGCTGGCTGAGGGTGGGCACTAAGCTGGCCACCCCACCCCCGACATGGACATGGCTGTGCTGTGGCGGAAGGGGTGGTGCGGGCATGGCCACGGCACTCGAGACAGCCCTCCGAGGAGGAGGGCGAGCCTGGCTGGACCCCCTGTCTGCGGTGCTGTGTCAGGGCAGCAGAGGACAGCCTCTTGCCCCCAGGAGTGTGCAGTGTGGGCAAGAGACAGAGTGATCATGTGTTTGGAACGCAGCTCCAGCCCAGCCAGGGGACCAGAAAAGCCCTCCCGCTTCCAGGGAGGATGTGCATGGCTCTGCCAATGCCTGTCTCCCAGGGCCGCTGGCAGGTCCCAGGATGCGCAAGACTGGGCTGCCCAGGCAGGTCCCTGCAGACAGCGGGGCCTGGGCTAGAGGCCAAGGGCTGGGACTGGGAAGGGACGCGACGCCTGATAGCCAGTGAGGAGCCAGGCACACAACTTGGAAATAAACAAGCTTTATTTTCAGTTTCAACAGGTAAGGCGATACCTGCTTCATCGTGTGCTTTTATGTAAATGCCAAATAGCAAAATAACAGCTAGAAAATAAACAGTTTGTCAGTTTGGAGACCAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>AGCGGAGGGAAGTCAGGCTCTTCCACGTTCCCGTATTTTCCTGTGGAGCTGCTCAGTGCCCGGCTTAGAGGACCAGGAATGGGTAATCACCAGCCGTACGCTGGAGGCTGGAGCCGCTACACCGTGGCTCGCCTCGCTGCGACTGGTGGTAACCGCGACCGAGACGGCAGTGCGGCGGAAGCGATACATTTTATACACAGATACAATTTTATTGTAACACATTAAGAAAAACAGCTTTGTAATTTTTTATTTAAAAATATTGGCCTGGCGCGGTGGCTCATGCCTGTAATCATAGCATTATGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAGAAATGAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCTGAGATGGCACCACTGGACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAGAAAACTCAAGAATGACATGGCAGTGGTTTGGAAATCCGAGAGTGAGAGAGACATCCAGGCTTTGCCGCAAGCCTCACCAGAACCTCCCTGGGTGTGAAGAGTCCTGTTCGGGAGCAGGGCTGTGAGGCGGGGCAGGCCAGGGCTTGTCTGGGTCACAGGCACCAACCCCTTCCTCAGGTCGGTGCACCACTGCGTGACCTCCAGGCAGCCACAGCCTGGAAAAGCACTCGGTTACCACCTTGCTCAACACCTGTGCCCGGAGCATCCACAAGGCCTGCCTCGGCTGCTTAGCCAGGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACGCATGCCTCCTGTCAGACACTTCTAGGTGTTGGCGTCCATGGAGAGCCTGGAGTTAGGAGAACACAGAGGACATAGGAAACCCTTCAAACACACATCGGATTCTCTGCTCACAGTTTTGGGTTCAGGCTGTGCTGCTTTGGGCAGGACTCGTCACTGTGTCCCCCACTCCATGAAACTGGGCCTGCTGTCCTGTTAGGATGCTGTAAGCCCCCGGGCCTGGGCTGTCCTTTCTGACGCACTGTCCCATTCCTTGGCCTGGTTCATCCCCAGCTTCCTGGCAAAGTTCTGCTCCCTGAAGCAGGAAGAGGCTGAGATTAATGCCAACGAAGTGGGGCCGTGGGCCTGGGAAGACTGTGTGGCTGGCTGAGGGTGGGCACTAAGCTGGCCACCCCACCCCCGACATGGACATGGCTGTGCTGTGGCGGAAGGGGTGGTGCGGGCATGGCCACGGCACTCGAGACAGCCCTCCGAGGAGGAGGGCGAGCCTGGCTGGACCCCCTGTCTGCGGTGCTGTGTCAGGGCAGCAGAGGACAGCCTCTTGCCCCCAGGAGTGTGCAGTGTGGGCAAGAGACAGAGTGATCATGTGTTTGGAACGCAGCTCCAGCCCAGCCAGGGGACCAGAAAAGCCCTCCCGCTTCCAGGGAGGATGTGCATGGCTCTGCCAATGCCTGTCTCCCAGGGCCGCTGGCAGGTCCCAGGATGCGCAAGACTGGGCTGCCCAGGCAGGTCCCTGCAGACAGCGGGGCCTGGGCTAGAGGCCAAGGGCTGGGACTGGGAAGGGACGCGACGCCTGATAGCCAGTGAGGAGCCAGGCACACAACTTGGAAATAAACAAGCTTTATTTTCAGTTTCAACAGGTAAGGCGATACCTGCTTCATCGTGTGCTTTTATGTAAATGCCAAATAGCAAAATAACAGCTAGAAAATAAACAGTTTGTCAGTTTGGAGACCAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG029243]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 23:33, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT074279 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1862 nt |
| Genomic location |
chr2+:130887194..130896990 |
| Exon number |
6 |
| Exons |
130887194..130887371,130892718..130893118,130894265..130894397,130895211..130895444,130895649..130895736,130896184..130896990 |
| Genome context |
|
| Sequence |
000001 AGCGGAGGGA AGTCAGGCTC TTCCACGTTC CCGTATTTTC CTGTGGAGCT GCTCAGTGCC CGGCTTAGAG GACCAGGAAT 000080
000081 GGGTAATCAC CAGCCGTACG CTGGAGGCTG GAGCCGCTAC ACCGTGGCTC GCCTCGCTGC GACTGGTGGT AACCGCGACC 000160 000161 GAGACGGCAG TGCGGCGGAA GCGATACATT TTATACACAG ATACAATTTT ATTGTAACAC ATTAAGAAAA ACAGCTTTGT 000240 000241 AATTTTTTAT TTAAAAATAT TGGCCTGGCG CGGTGGCTCA TGCCTGTAAT CATAGCATTA TGGGAGGCTG AGGCGGGCAG 000320 000321 ATCATGAGGT CAGGAGATCG AGACCATCCT GGCTAACATG GTGAAACCCC GTCTCTACTA AAAATACAAA AAAGAAATGA 000400 000401 GCCGGGCGTG GTGGCGGGCG CCTGTAGTCC CAGCTACTTG GGAGGCTGAG GTAGGAGAAT GGCGTGAACC CGGGAGGTGG 000480 000481 AGCTTGCAGT GAGCTGAGAT GGCACCACTG GACTCCAGCC TGGGCGACAG AGTGAGACTC CATCTCAAAA AAAAAAAAAG 000560 000561 AAAACTCAAG AATGACATGG CAGTGGTTTG GAAATCCGAG AGTGAGAGAG ACATCCAGGC TTTGCCGCAA GCCTCACCAG 000640 000641 AACCTCCCTG GGTGTGAAGA GTCCTGTTCG GGAGCAGGGC TGTGAGGCGG GGCAGGCCAG GGCTTGTCTG GGTCACAGGC 000720 000721 ACCAACCCCT TCCTCAGGTC GGTGCACCAC TGCGTGACCT CCAGGCAGCC ACAGCCTGGA AAAGCACTCG GTTACCACCT 000800 000801 TGCTCAACAC CTGTGCCCGG AGCATCCACA AGGCCTGCCT CGGCTGCTTA GCCAGGACTG CAGGGATGGC CCGCAGCCTC 000880 000881 ATCGGGGCCA AGGACGCATG CCTCCTGTCA GACACTTCTA GGTGTTGGCG TCCATGGAGA GCCTGGAGTT AGGAGAACAC 000960 000961 AGAGGACATA GGAAACCCTT CAAACACACA TCGGATTCTC TGCTCACAGT TTTGGGTTCA GGCTGTGCTG CTTTGGGCAG 001040 001041 GACTCGTCAC TGTGTCCCCC ACTCCATGAA ACTGGGCCTG CTGTCCTGTT AGGATGCTGT AAGCCCCCGG GCCTGGGCTG 001120 001121 TCCTTTCTGA CGCACTGTCC CATTCCTTGG CCTGGTTCAT CCCCAGCTTC CTGGCAAAGT TCTGCTCCCT GAAGCAGGAA 001200 001201 GAGGCTGAGA TTAATGCCAA CGAAGTGGGG CCGTGGGCCT GGGAAGACTG TGTGGCTGGC TGAGGGTGGG CACTAAGCTG 001280 001281 GCCACCCCAC CCCCGACATG GACATGGCTG TGCTGTGGCG GAAGGGGTGG TGCGGGCATG GCCACGGCAC TCGAGACAGC 001360 001361 CCTCCGAGGA GGAGGGCGAG CCTGGCTGGA CCCCCTGTCT GCGGTGCTGT GTCAGGGCAG CAGAGGACAG CCTCTTGCCC 001440 001441 CCAGGAGTGT GCAGTGTGGG CAAGAGACAG AGTGATCATG TGTTTGGAAC GCAGCTCCAG CCCAGCCAGG GGACCAGAAA 001520 001521 AGCCCTCCCG CTTCCAGGGA GGATGTGCAT GGCTCTGCCA ATGCCTGTCT CCCAGGGCCG CTGGCAGGTC CCAGGATGCG 001600 001601 CAAGACTGGG CTGCCCAGGC AGGTCCCTGC AGACAGCGGG GCCTGGGCTA GAGGCCAAGG GCTGGGACTG GGAAGGGACG 001680 001681 CGACGCCTGA TAGCCAGTGA GGAGCCAGGC ACACAACTTG GAAATAAACA AGCTTTATTT TCAGTTTCAA CAGGTAAGGC 001760 001761 GATACCTGCT TCATCGTGTG CTTTTATGTA AATGCCAAAT AGCAAAATAA CAGCTAGAAA ATAAACAGTT TGTCAGTTTG 001840 001841 GAGACCAAAA AAAAAAAAAA AA |
Predicted Small Protein
| Name | NONHSAT074279_smProtein_1337:1474 |
| Length | 46 |
| Molecular weight | 4683.268 |
| Aromaticity | 0.0222222222222 |
| Instability index | 47.3911111111 |
| Isoelectric point | 6.10589599609 |
| Runs | 8 |
| Runs residual | 0.0155303030303 |
| Runs probability | 0.0254924041688 |
| Amino acid sequence | MATALETALRGGGRAWLDPLSAVLCQGSRGQPLAPRSVQCGQETE |
| Secondary structure | LHHHHHHHHHLLLLEEELHHHHEEELLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
