Difference between revisions of "NONHSAT076844"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTCACTGACTTAACTGCCTGAGTAGCATCTGGCTTAGGACTAGTGGTTCTGTCCTCTAGCCCTACTTCCCTATGCTCCTTAAAAGACCCTTTTACCAGAAATCTAAAATTACCAGTCCCATCAAGACAAGTATAAAGATAGCCTACTGCAGAAAGGCATCCAGAAAGAGGAAGAAGGCCCTGAGTAGAAGGAACAAGGTACCACAAAGGGTGAATGAACCTCTTAGGAAAAGGAAGCATAATGCTGACACTTAGATGAGACCCAAAGAAGGAGGATTTAACCTCCCAGGGGCTGGAGGAATATGAGGGTAGATAGAACCCTGCCGGCCAGCTCTACCTACCTCTTCCTTTGTGTGTCTTTTTTGAAGGTATAATAGCACCACTCTGACTTGGGTCTTAACTCAAGCACATCCTAAGCTGTATGATCTTAAGCAGGTTAATCATTCCACCTGTTTCAATTACGAAATCAGGACCCTGATTACCTCGATGCTGCAACTGAGATAAATGAAATGATGATTCCACAATCTGTAGTGCAGGGCCTGACAAACTGCAGTCTGCAGGCCAAATCCAGCAAAGTTAACAAGCCAGAGCTATTCACTTACTATGGCTGCTTTCACCTGCAAAGAATAAAACATCTGCTATCTGGCCCTATAACTCTGTAGGGGCTCTCTCAAGTGGCCCTATCACCTCGCATAACTCACAAAAGCTGCTGTAAGTTATAACTTGGGTCATGGTTACTTACCTCATACAAGACTTTCATCAATAAATATTGAACGCCCTAGACAGAAGATTCAAATATTTCACATCCTGAAGTTCTCCACAATTATCAATTTCAAAATTTTCTTCTAAGTTTCAAGTTTGAACATGTGATGGATCTCCTGGCACTGTTAAATTTATTCTGGTTTTCTCCTGGACTATATGTCTTAGACTATATTTACTATATGTACATTTCTTGGAGTACATGGACATGTGAACAGGACCTGGCACATGGGCATTATTCAATAGTAAAACATTTCCTATGTAAATGTAGCAAATATAGTGAGGGTGTCATGGAGGACAGCACCAGAATGACACAGGGAAGGCTATTGACCTCTTTGCCTTTGCCTTCTCCCTGAGATTATGCCAGTGTATGCACAACATTATTACAGCCTACTACTGCCAGACACACTTATAACCCATTAACTGTAGCCTGTTACTACCAGAGGTGCCTGTAACCCGTTACCACGGCCTACTACCATAATACATGCTTATATCCAATGATATAGCTATATTACTACAGCCTGCTACCACAAGAGCGACTTGTATTATTACTACATACACTACCTCAGGACACTCTGCTCTTGCGCCCAGGAACACCTGCTATAACATCTTTAAGCAATAAATTGCCACCTCTCCACACCCCTACACTGAGTAAGGCCAAATGTGACCACTGAAGAGCAAAAGCAATCATCAAAGAAACCCAAGAAGCTCATCAACATCTAGGAAATAGGACAAAACCCTGGGGCCCACCTAAGTCAGATGAACAATAAAAAGGCAGTTTCTGCATCTTTCATGTTCCAAAGGAAATAGAGAATTGAGTTTTGAGGCCCCAACCTTACAGATTAGCTTTGGTCTTGCTGGTAAATGGTTTTTAAAGATTGCATTTATGATTCTCAGGGGGAGGCAAGCTGTGAGTAAGAGATGATTTGGTACCTTTACATAAGTTATACAAGATTCAAGTTTAATTACACAAGGGATTCTATAAAGCTGTAAGAATTATTTGATCCCAAATTGCCCAAACACTACGTTATATCTAGAGTATACTACCAGGAGAAGCTCGAGGATGTTGTCCTTTAAAGAATTCCAAATGCACATATGCCTTTGTAAGTGTACGTTGTGTCTTTGCACTTCCTCACATTTACAATTCTTGGACTTCATGATGGATGACCTGGGCTTGTTTCTAGGAAAACAAGCATCTTCATTTCTGCTAACAAATGAATGAGAAGTGTGAGCTGATGGTGATCTGGTGGTTCACCTGGCTCAGCCTGCACTGGCCTTGTTTAGACGGTCTATCAAACCAAATAAGCCCTTATCATATCCAGAAAGCATCTCAATTTATCCCAAACAAAAGCCCAACCATGAACATCATAGTAAATCTTTCAAACAGGAAAAAAAGGGTAAACTACATATTTCCTCCTGACTCACATGGTTCTCCCTCTGCTTACAACACCCATCTGATTACATGAAGGGCTAGGGTACTAAGGTCACTCAACGTCACTCTTCAGCTAAACAGTAACACTCAAAAACACCTTTGTCAGAGAAAGAAGAGAAAGTTTATTTAGAGACACTGGCGTGGAGAGGAATAATCAATGATGATTATGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTTGTGCTGGCCCTGGGAGAACACATGGCACAGAAAAGCCCAGATTCAAGCAGCTTCTTCAACCAAAACATTGACATATTCTGCTGACTAAAGAGACAAATAAGAAAATTAAAGATGTACACTCCAAGAACCCATGTGTTTTTCATATAGGGACCTTCCCAACTCAGTTTCCCAGAGATTCCATCAAATACAGACCTTCAAAGAGTTTGAGAGTACCACCTCAAAGAGAGATAATTTCCTTTCTTTTTGCCTCTGTGGGGAATATTTCAGATGACATGCTGAACACCTATACCTGCAGGCCTTCACCATCTTCTTCTGTTCCTCAACTCTGGTCAGCATGAGGTTTTGGTTGAAACAGCAAGATCTGCCTGCTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTTGTCCAAAGCAGTCCACCCATCATTCCCTTTATATAGTGGCTTATGACACGGGCCCTCCTGGTAAAGGGACATGATGATTGATGGTGCCTTGTCACAATGGCTGAAAGTCAACATGAGAGCTTGGTTGAGTGGTTGGGGCAGTACTGAAATGTTGGATAAAATTAAGAAAATGCCTAGTAGGACTCCTTAAATCAGCTGGCTGCCTATCAGCCAGCCCATAGGAACCCCCAAGAATTACAGAAACCAAGCAAAATTCTCTATGCCTTTCAAACCCAAGTCTAGCTTTTTTTTTTTAAAAGAATAACCGTTTATTAAAGTAGATACAGAACACTT</dnaseq>| | sequence = <dnaseq>GTCACTGACTTAACTGCCTGAGTAGCATCTGGCTTAGGACTAGTGGTTCTGTCCTCTAGCCCTACTTCCCTATGCTCCTTAAAAGACCCTTTTACCAGAAATCTAAAATTACCAGTCCCATCAAGACAAGTATAAAGATAGCCTACTGCAGAAAGGCATCCAGAAAGAGGAAGAAGGCCCTGAGTAGAAGGAACAAGGTACCACAAAGGGTGAATGAACCTCTTAGGAAAAGGAAGCATAATGCTGACACTTAGATGAGACCCAAAGAAGGAGGATTTAACCTCCCAGGGGCTGGAGGAATATGAGGGTAGATAGAACCCTGCCGGCCAGCTCTACCTACCTCTTCCTTTGTGTGTCTTTTTTGAAGGTATAATAGCACCACTCTGACTTGGGTCTTAACTCAAGCACATCCTAAGCTGTATGATCTTAAGCAGGTTAATCATTCCACCTGTTTCAATTACGAAATCAGGACCCTGATTACCTCGATGCTGCAACTGAGATAAATGAAATGATGATTCCACAATCTGTAGTGCAGGGCCTGACAAACTGCAGTCTGCAGGCCAAATCCAGCAAAGTTAACAAGCCAGAGCTATTCACTTACTATGGCTGCTTTCACCTGCAAAGAATAAAACATCTGCTATCTGGCCCTATAACTCTGTAGGGGCTCTCTCAAGTGGCCCTATCACCTCGCATAACTCACAAAAGCTGCTGTAAGTTATAACTTGGGTCATGGTTACTTACCTCATACAAGACTTTCATCAATAAATATTGAACGCCCTAGACAGAAGATTCAAATATTTCACATCCTGAAGTTCTCCACAATTATCAATTTCAAAATTTTCTTCTAAGTTTCAAGTTTGAACATGTGATGGATCTCCTGGCACTGTTAAATTTATTCTGGTTTTCTCCTGGACTATATGTCTTAGACTATATTTACTATATGTACATTTCTTGGAGTACATGGACATGTGAACAGGACCTGGCACATGGGCATTATTCAATAGTAAAACATTTCCTATGTAAATGTAGCAAATATAGTGAGGGTGTCATGGAGGACAGCACCAGAATGACACAGGGAAGGCTATTGACCTCTTTGCCTTTGCCTTCTCCCTGAGATTATGCCAGTGTATGCACAACATTATTACAGCCTACTACTGCCAGACACACTTATAACCCATTAACTGTAGCCTGTTACTACCAGAGGTGCCTGTAACCCGTTACCACGGCCTACTACCATAATACATGCTTATATCCAATGATATAGCTATATTACTACAGCCTGCTACCACAAGAGCGACTTGTATTATTACTACATACACTACCTCAGGACACTCTGCTCTTGCGCCCAGGAACACCTGCTATAACATCTTTAAGCAATAAATTGCCACCTCTCCACACCCCTACACTGAGTAAGGCCAAATGTGACCACTGAAGAGCAAAAGCAATCATCAAAGAAACCCAAGAAGCTCATCAACATCTAGGAAATAGGACAAAACCCTGGGGCCCACCTAAGTCAGATGAACAATAAAAAGGCAGTTTCTGCATCTTTCATGTTCCAAAGGAAATAGAGAATTGAGTTTTGAGGCCCCAACCTTACAGATTAGCTTTGGTCTTGCTGGTAAATGGTTTTTAAAGATTGCATTTATGATTCTCAGGGGGAGGCAAGCTGTGAGTAAGAGATGATTTGGTACCTTTACATAAGTTATACAAGATTCAAGTTTAATTACACAAGGGATTCTATAAAGCTGTAAGAATTATTTGATCCCAAATTGCCCAAACACTACGTTATATCTAGAGTATACTACCAGGAGAAGCTCGAGGATGTTGTCCTTTAAAGAATTCCAAATGCACATATGCCTTTGTAAGTGTACGTTGTGTCTTTGCACTTCCTCACATTTACAATTCTTGGACTTCATGATGGATGACCTGGGCTTGTTTCTAGGAAAACAAGCATCTTCATTTCTGCTAACAAATGAATGAGAAGTGTGAGCTGATGGTGATCTGGTGGTTCACCTGGCTCAGCCTGCACTGGCCTTGTTTAGACGGTCTATCAAACCAAATAAGCCCTTATCATATCCAGAAAGCATCTCAATTTATCCCAAACAAAAGCCCAACCATGAACATCATAGTAAATCTTTCAAACAGGAAAAAAAGGGTAAACTACATATTTCCTCCTGACTCACATGGTTCTCCCTCTGCTTACAACACCCATCTGATTACATGAAGGGCTAGGGTACTAAGGTCACTCAACGTCACTCTTCAGCTAAACAGTAACACTCAAAAACACCTTTGTCAGAGAAAGAAGAGAAAGTTTATTTAGAGACACTGGCGTGGAGAGGAATAATCAATGATGATTATGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTTGTGCTGGCCCTGGGAGAACACATGGCACAGAAAAGCCCAGATTCAAGCAGCTTCTTCAACCAAAACATTGACATATTCTGCTGACTAAAGAGACAAATAAGAAAATTAAAGATGTACACTCCAAGAACCCATGTGTTTTTCATATAGGGACCTTCCCAACTCAGTTTCCCAGAGATTCCATCAAATACAGACCTTCAAAGAGTTTGAGAGTACCACCTCAAAGAGAGATAATTTCCTTTCTTTTTGCCTCTGTGGGGAATATTTCAGATGACATGCTGAACACCTATACCTGCAGGCCTTCACCATCTTCTTCTGTTCCTCAACTCTGGTCAGCATGAGGTTTTGGTTGAAACAGCAAGATCTGCCTGCTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTTGTCCAAAGCAGTCCACCCATCATTCCCTTTATATAGTGGCTTATGACACGGGCCCTCCTGGTAAAGGGACATGATGATTGATGGTGCCTTGTCACAATGGCTGAAAGTCAACATGAGAGCTTGGTTGAGTGGTTGGGGCAGTACTGAAATGTTGGATAAAATTAAGAAAATGCCTAGTAGGACTCCTTAAATCAGCTGGCTGCCTATCAGCCAGCCCATAGGAACCCCCAAGAATTACAGAAACCAAGCAAAATTCTCTATGCCTTTCAAACCCAAGTCTAGCTTTTTTTTTTTAAAAGAATAACCGTTTATTAAAGTAGATACAGAACACTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG030495]][[Category:Transcripts]] |
Latest revision as of 23:45, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT076844 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3132 nt |
Genomic location |
chr2-:217735164..217738655 |
Exon number |
2 |
Exons |
217735164..217735680,217736038..217738655 |
Genome context |
|
Sequence |
000001 GTCACTGACT TAACTGCCTG AGTAGCATCT GGCTTAGGAC TAGTGGTTCT GTCCTCTAGC CCTACTTCCC TATGCTCCTT 000080
000081 AAAAGACCCT TTTACCAGAA ATCTAAAATT ACCAGTCCCA TCAAGACAAG TATAAAGATA GCCTACTGCA GAAAGGCATC 000160 000161 CAGAAAGAGG AAGAAGGCCC TGAGTAGAAG GAACAAGGTA CCACAAAGGG TGAATGAACC TCTTAGGAAA AGGAAGCATA 000240 000241 ATGCTGACAC TTAGATGAGA CCCAAAGAAG GAGGATTTAA CCTCCCAGGG GCTGGAGGAA TATGAGGGTA GATAGAACCC 000320 000321 TGCCGGCCAG CTCTACCTAC CTCTTCCTTT GTGTGTCTTT TTTGAAGGTA TAATAGCACC ACTCTGACTT GGGTCTTAAC 000400 000401 TCAAGCACAT CCTAAGCTGT ATGATCTTAA GCAGGTTAAT CATTCCACCT GTTTCAATTA CGAAATCAGG ACCCTGATTA 000480 000481 CCTCGATGCT GCAACTGAGA TAAATGAAAT GATGATTCCA CAATCTGTAG TGCAGGGCCT GACAAACTGC AGTCTGCAGG 000560 000561 CCAAATCCAG CAAAGTTAAC AAGCCAGAGC TATTCACTTA CTATGGCTGC TTTCACCTGC AAAGAATAAA ACATCTGCTA 000640 000641 TCTGGCCCTA TAACTCTGTA GGGGCTCTCT CAAGTGGCCC TATCACCTCG CATAACTCAC AAAAGCTGCT GTAAGTTATA 000720 000721 ACTTGGGTCA TGGTTACTTA CCTCATACAA GACTTTCATC AATAAATATT GAACGCCCTA GACAGAAGAT TCAAATATTT 000800 000801 CACATCCTGA AGTTCTCCAC AATTATCAAT TTCAAAATTT TCTTCTAAGT TTCAAGTTTG AACATGTGAT GGATCTCCTG 000880 000881 GCACTGTTAA ATTTATTCTG GTTTTCTCCT GGACTATATG TCTTAGACTA TATTTACTAT ATGTACATTT CTTGGAGTAC 000960 000961 ATGGACATGT GAACAGGACC TGGCACATGG GCATTATTCA ATAGTAAAAC ATTTCCTATG TAAATGTAGC AAATATAGTG 001040 001041 AGGGTGTCAT GGAGGACAGC ACCAGAATGA CACAGGGAAG GCTATTGACC TCTTTGCCTT TGCCTTCTCC CTGAGATTAT 001120 001121 GCCAGTGTAT GCACAACATT ATTACAGCCT ACTACTGCCA GACACACTTA TAACCCATTA ACTGTAGCCT GTTACTACCA 001200 001201 GAGGTGCCTG TAACCCGTTA CCACGGCCTA CTACCATAAT ACATGCTTAT ATCCAATGAT ATAGCTATAT TACTACAGCC 001280 001281 TGCTACCACA AGAGCGACTT GTATTATTAC TACATACACT ACCTCAGGAC ACTCTGCTCT TGCGCCCAGG AACACCTGCT 001360 001361 ATAACATCTT TAAGCAATAA ATTGCCACCT CTCCACACCC CTACACTGAG TAAGGCCAAA TGTGACCACT GAAGAGCAAA 001440 001441 AGCAATCATC AAAGAAACCC AAGAAGCTCA TCAACATCTA GGAAATAGGA CAAAACCCTG GGGCCCACCT AAGTCAGATG 001520 001521 AACAATAAAA AGGCAGTTTC TGCATCTTTC ATGTTCCAAA GGAAATAGAG AATTGAGTTT TGAGGCCCCA ACCTTACAGA 001600 001601 TTAGCTTTGG TCTTGCTGGT AAATGGTTTT TAAAGATTGC ATTTATGATT CTCAGGGGGA GGCAAGCTGT GAGTAAGAGA 001680 001681 TGATTTGGTA CCTTTACATA AGTTATACAA GATTCAAGTT TAATTACACA AGGGATTCTA TAAAGCTGTA AGAATTATTT 001760 001761 GATCCCAAAT TGCCCAAACA CTACGTTATA TCTAGAGTAT ACTACCAGGA GAAGCTCGAG GATGTTGTCC TTTAAAGAAT 001840 001841 TCCAAATGCA CATATGCCTT TGTAAGTGTA CGTTGTGTCT TTGCACTTCC TCACATTTAC AATTCTTGGA CTTCATGATG 001920 001921 GATGACCTGG GCTTGTTTCT AGGAAAACAA GCATCTTCAT TTCTGCTAAC AAATGAATGA GAAGTGTGAG CTGATGGTGA 002000 002001 TCTGGTGGTT CACCTGGCTC AGCCTGCACT GGCCTTGTTT AGACGGTCTA TCAAACCAAA TAAGCCCTTA TCATATCCAG 002080 002081 AAAGCATCTC AATTTATCCC AAACAAAAGC CCAACCATGA ACATCATAGT AAATCTTTCA AACAGGAAAA AAAGGGTAAA 002160 002161 CTACATATTT CCTCCTGACT CACATGGTTC TCCCTCTGCT TACAACACCC ATCTGATTAC ATGAAGGGCT AGGGTACTAA 002240 002241 GGTCACTCAA CGTCACTCTT CAGCTAAACA GTAACACTCA AAAACACCTT TGTCAGAGAA AGAAGAGAAA GTTTATTTAG 002320 002321 AGACACTGGC GTGGAGAGGA ATAATCAATG ATGATTATGG TGGTCTTGGG CCTGCACCAA AAGCCCTTCT TTGTGCTGGC 002400 002401 CCTGGGAGAA CACATGGCAC AGAAAAGCCC AGATTCAAGC AGCTTCTTCA ACCAAAACAT TGACATATTC TGCTGACTAA 002480 002481 AGAGACAAAT AAGAAAATTA AAGATGTACA CTCCAAGAAC CCATGTGTTT TTCATATAGG GACCTTCCCA ACTCAGTTTC 002560 002561 CCAGAGATTC CATCAAATAC AGACCTTCAA AGAGTTTGAG AGTACCACCT CAAAGAGAGA TAATTTCCTT TCTTTTTGCC 002640 002641 TCTGTGGGGA ATATTTCAGA TGACATGCTG AACACCTATA CCTGCAGGCC TTCACCATCT TCTTCTGTTC CTCAACTCTG 002720 002721 GTCAGCATGA GGTTTTGGTT GAAACAGCAA GATCTGCCTG CTCCTACTGT TGTCCCTCTC TCCTACCGCA GGTCCATTTG 002800 002801 TCCAAAGCAG TCCACCCATC ATTCCCTTTA TATAGTGGCT TATGACACGG GCCCTCCTGG TAAAGGGACA TGATGATTGA 002880 002881 TGGTGCCTTG TCACAATGGC TGAAAGTCAA CATGAGAGCT TGGTTGAGTG GTTGGGGCAG TACTGAAATG TTGGATAAAA 002960 002961 TTAAGAAAAT GCCTAGTAGG ACTCCTTAAA TCAGCTGGCT GCCTATCAGC CAGCCCATAG GAACCCCCAA GAATTACAGA 003040 003041 AACCAAGCAA AATTCTCTAT GCCTTTCAAA CCCAAGTCTA GCTTTTTTTT TTTAAAAGAA TAACCGTTTA TTAAAGTAGA 003120 003121 TACAGAACAC TT |
Predicted Small Protein
Name | NONHSAT076844_smProtein_71:253 |
Length | 61 |
Molecular weight | 7164.5136 |
Aromaticity | 0.05 |
Instability index | 71.6568333333 |
Isoelectric point | 11.7512817383 |
Runs | 6 |
Runs residual | 0.0497340425532 |
Runs probability | 0.0414679385268 |
Amino acid sequence | MLLKRPFYQKSKITSPIKTSIKIAYCRKASRKRKKALSRRNKVPQRVNEPLRKRKHNADT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLEEEHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHLLLLL |
PRMN | - |
PiMo | - |