Difference between revisions of "NONHSAT076844"

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sequence = <dnaseq>GTCACTGACTTAACTGCCTGAGTAGCATCTGGCTTAGGACTAGTGGTTCTGTCCTCTAGCCCTACTTCCCTATGCTCCTTAAAAGACCCTTTTACCAGAAATCTAAAATTACCAGTCCCATCAAGACAAGTATAAAGATAGCCTACTGCAGAAAGGCATCCAGAAAGAGGAAGAAGGCCCTGAGTAGAAGGAACAAGGTACCACAAAGGGTGAATGAACCTCTTAGGAAAAGGAAGCATAATGCTGACACTTAGATGAGACCCAAAGAAGGAGGATTTAACCTCCCAGGGGCTGGAGGAATATGAGGGTAGATAGAACCCTGCCGGCCAGCTCTACCTACCTCTTCCTTTGTGTGTCTTTTTTGAAGGTATAATAGCACCACTCTGACTTGGGTCTTAACTCAAGCACATCCTAAGCTGTATGATCTTAAGCAGGTTAATCATTCCACCTGTTTCAATTACGAAATCAGGACCCTGATTACCTCGATGCTGCAACTGAGATAAATGAAATGATGATTCCACAATCTGTAGTGCAGGGCCTGACAAACTGCAGTCTGCAGGCCAAATCCAGCAAAGTTAACAAGCCAGAGCTATTCACTTACTATGGCTGCTTTCACCTGCAAAGAATAAAACATCTGCTATCTGGCCCTATAACTCTGTAGGGGCTCTCTCAAGTGGCCCTATCACCTCGCATAACTCACAAAAGCTGCTGTAAGTTATAACTTGGGTCATGGTTACTTACCTCATACAAGACTTTCATCAATAAATATTGAACGCCCTAGACAGAAGATTCAAATATTTCACATCCTGAAGTTCTCCACAATTATCAATTTCAAAATTTTCTTCTAAGTTTCAAGTTTGAACATGTGATGGATCTCCTGGCACTGTTAAATTTATTCTGGTTTTCTCCTGGACTATATGTCTTAGACTATATTTACTATATGTACATTTCTTGGAGTACATGGACATGTGAACAGGACCTGGCACATGGGCATTATTCAATAGTAAAACATTTCCTATGTAAATGTAGCAAATATAGTGAGGGTGTCATGGAGGACAGCACCAGAATGACACAGGGAAGGCTATTGACCTCTTTGCCTTTGCCTTCTCCCTGAGATTATGCCAGTGTATGCACAACATTATTACAGCCTACTACTGCCAGACACACTTATAACCCATTAACTGTAGCCTGTTACTACCAGAGGTGCCTGTAACCCGTTACCACGGCCTACTACCATAATACATGCTTATATCCAATGATATAGCTATATTACTACAGCCTGCTACCACAAGAGCGACTTGTATTATTACTACATACACTACCTCAGGACACTCTGCTCTTGCGCCCAGGAACACCTGCTATAACATCTTTAAGCAATAAATTGCCACCTCTCCACACCCCTACACTGAGTAAGGCCAAATGTGACCACTGAAGAGCAAAAGCAATCATCAAAGAAACCCAAGAAGCTCATCAACATCTAGGAAATAGGACAAAACCCTGGGGCCCACCTAAGTCAGATGAACAATAAAAAGGCAGTTTCTGCATCTTTCATGTTCCAAAGGAAATAGAGAATTGAGTTTTGAGGCCCCAACCTTACAGATTAGCTTTGGTCTTGCTGGTAAATGGTTTTTAAAGATTGCATTTATGATTCTCAGGGGGAGGCAAGCTGTGAGTAAGAGATGATTTGGTACCTTTACATAAGTTATACAAGATTCAAGTTTAATTACACAAGGGATTCTATAAAGCTGTAAGAATTATTTGATCCCAAATTGCCCAAACACTACGTTATATCTAGAGTATACTACCAGGAGAAGCTCGAGGATGTTGTCCTTTAAAGAATTCCAAATGCACATATGCCTTTGTAAGTGTACGTTGTGTCTTTGCACTTCCTCACATTTACAATTCTTGGACTTCATGATGGATGACCTGGGCTTGTTTCTAGGAAAACAAGCATCTTCATTTCTGCTAACAAATGAATGAGAAGTGTGAGCTGATGGTGATCTGGTGGTTCACCTGGCTCAGCCTGCACTGGCCTTGTTTAGACGGTCTATCAAACCAAATAAGCCCTTATCATATCCAGAAAGCATCTCAATTTATCCCAAACAAAAGCCCAACCATGAACATCATAGTAAATCTTTCAAACAGGAAAAAAAGGGTAAACTACATATTTCCTCCTGACTCACATGGTTCTCCCTCTGCTTACAACACCCATCTGATTACATGAAGGGCTAGGGTACTAAGGTCACTCAACGTCACTCTTCAGCTAAACAGTAACACTCAAAAACACCTTTGTCAGAGAAAGAAGAGAAAGTTTATTTAGAGACACTGGCGTGGAGAGGAATAATCAATGATGATTATGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTTGTGCTGGCCCTGGGAGAACACATGGCACAGAAAAGCCCAGATTCAAGCAGCTTCTTCAACCAAAACATTGACATATTCTGCTGACTAAAGAGACAAATAAGAAAATTAAAGATGTACACTCCAAGAACCCATGTGTTTTTCATATAGGGACCTTCCCAACTCAGTTTCCCAGAGATTCCATCAAATACAGACCTTCAAAGAGTTTGAGAGTACCACCTCAAAGAGAGATAATTTCCTTTCTTTTTGCCTCTGTGGGGAATATTTCAGATGACATGCTGAACACCTATACCTGCAGGCCTTCACCATCTTCTTCTGTTCCTCAACTCTGGTCAGCATGAGGTTTTGGTTGAAACAGCAAGATCTGCCTGCTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTTGTCCAAAGCAGTCCACCCATCATTCCCTTTATATAGTGGCTTATGACACGGGCCCTCCTGGTAAAGGGACATGATGATTGATGGTGCCTTGTCACAATGGCTGAAAGTCAACATGAGAGCTTGGTTGAGTGGTTGGGGCAGTACTGAAATGTTGGATAAAATTAAGAAAATGCCTAGTAGGACTCCTTAAATCAGCTGGCTGCCTATCAGCCAGCCCATAGGAACCCCCAAGAATTACAGAAACCAAGCAAAATTCTCTATGCCTTTCAAACCCAAGTCTAGCTTTTTTTTTTTAAAAGAATAACCGTTTATTAAAGTAGATACAGAACACTT</dnaseq>|
 
sequence = <dnaseq>GTCACTGACTTAACTGCCTGAGTAGCATCTGGCTTAGGACTAGTGGTTCTGTCCTCTAGCCCTACTTCCCTATGCTCCTTAAAAGACCCTTTTACCAGAAATCTAAAATTACCAGTCCCATCAAGACAAGTATAAAGATAGCCTACTGCAGAAAGGCATCCAGAAAGAGGAAGAAGGCCCTGAGTAGAAGGAACAAGGTACCACAAAGGGTGAATGAACCTCTTAGGAAAAGGAAGCATAATGCTGACACTTAGATGAGACCCAAAGAAGGAGGATTTAACCTCCCAGGGGCTGGAGGAATATGAGGGTAGATAGAACCCTGCCGGCCAGCTCTACCTACCTCTTCCTTTGTGTGTCTTTTTTGAAGGTATAATAGCACCACTCTGACTTGGGTCTTAACTCAAGCACATCCTAAGCTGTATGATCTTAAGCAGGTTAATCATTCCACCTGTTTCAATTACGAAATCAGGACCCTGATTACCTCGATGCTGCAACTGAGATAAATGAAATGATGATTCCACAATCTGTAGTGCAGGGCCTGACAAACTGCAGTCTGCAGGCCAAATCCAGCAAAGTTAACAAGCCAGAGCTATTCACTTACTATGGCTGCTTTCACCTGCAAAGAATAAAACATCTGCTATCTGGCCCTATAACTCTGTAGGGGCTCTCTCAAGTGGCCCTATCACCTCGCATAACTCACAAAAGCTGCTGTAAGTTATAACTTGGGTCATGGTTACTTACCTCATACAAGACTTTCATCAATAAATATTGAACGCCCTAGACAGAAGATTCAAATATTTCACATCCTGAAGTTCTCCACAATTATCAATTTCAAAATTTTCTTCTAAGTTTCAAGTTTGAACATGTGATGGATCTCCTGGCACTGTTAAATTTATTCTGGTTTTCTCCTGGACTATATGTCTTAGACTATATTTACTATATGTACATTTCTTGGAGTACATGGACATGTGAACAGGACCTGGCACATGGGCATTATTCAATAGTAAAACATTTCCTATGTAAATGTAGCAAATATAGTGAGGGTGTCATGGAGGACAGCACCAGAATGACACAGGGAAGGCTATTGACCTCTTTGCCTTTGCCTTCTCCCTGAGATTATGCCAGTGTATGCACAACATTATTACAGCCTACTACTGCCAGACACACTTATAACCCATTAACTGTAGCCTGTTACTACCAGAGGTGCCTGTAACCCGTTACCACGGCCTACTACCATAATACATGCTTATATCCAATGATATAGCTATATTACTACAGCCTGCTACCACAAGAGCGACTTGTATTATTACTACATACACTACCTCAGGACACTCTGCTCTTGCGCCCAGGAACACCTGCTATAACATCTTTAAGCAATAAATTGCCACCTCTCCACACCCCTACACTGAGTAAGGCCAAATGTGACCACTGAAGAGCAAAAGCAATCATCAAAGAAACCCAAGAAGCTCATCAACATCTAGGAAATAGGACAAAACCCTGGGGCCCACCTAAGTCAGATGAACAATAAAAAGGCAGTTTCTGCATCTTTCATGTTCCAAAGGAAATAGAGAATTGAGTTTTGAGGCCCCAACCTTACAGATTAGCTTTGGTCTTGCTGGTAAATGGTTTTTAAAGATTGCATTTATGATTCTCAGGGGGAGGCAAGCTGTGAGTAAGAGATGATTTGGTACCTTTACATAAGTTATACAAGATTCAAGTTTAATTACACAAGGGATTCTATAAAGCTGTAAGAATTATTTGATCCCAAATTGCCCAAACACTACGTTATATCTAGAGTATACTACCAGGAGAAGCTCGAGGATGTTGTCCTTTAAAGAATTCCAAATGCACATATGCCTTTGTAAGTGTACGTTGTGTCTTTGCACTTCCTCACATTTACAATTCTTGGACTTCATGATGGATGACCTGGGCTTGTTTCTAGGAAAACAAGCATCTTCATTTCTGCTAACAAATGAATGAGAAGTGTGAGCTGATGGTGATCTGGTGGTTCACCTGGCTCAGCCTGCACTGGCCTTGTTTAGACGGTCTATCAAACCAAATAAGCCCTTATCATATCCAGAAAGCATCTCAATTTATCCCAAACAAAAGCCCAACCATGAACATCATAGTAAATCTTTCAAACAGGAAAAAAAGGGTAAACTACATATTTCCTCCTGACTCACATGGTTCTCCCTCTGCTTACAACACCCATCTGATTACATGAAGGGCTAGGGTACTAAGGTCACTCAACGTCACTCTTCAGCTAAACAGTAACACTCAAAAACACCTTTGTCAGAGAAAGAAGAGAAAGTTTATTTAGAGACACTGGCGTGGAGAGGAATAATCAATGATGATTATGGTGGTCTTGGGCCTGCACCAAAAGCCCTTCTTTGTGCTGGCCCTGGGAGAACACATGGCACAGAAAAGCCCAGATTCAAGCAGCTTCTTCAACCAAAACATTGACATATTCTGCTGACTAAAGAGACAAATAAGAAAATTAAAGATGTACACTCCAAGAACCCATGTGTTTTTCATATAGGGACCTTCCCAACTCAGTTTCCCAGAGATTCCATCAAATACAGACCTTCAAAGAGTTTGAGAGTACCACCTCAAAGAGAGATAATTTCCTTTCTTTTTGCCTCTGTGGGGAATATTTCAGATGACATGCTGAACACCTATACCTGCAGGCCTTCACCATCTTCTTCTGTTCCTCAACTCTGGTCAGCATGAGGTTTTGGTTGAAACAGCAAGATCTGCCTGCTCCTACTGTTGTCCCTCTCTCCTACCGCAGGTCCATTTGTCCAAAGCAGTCCACCCATCATTCCCTTTATATAGTGGCTTATGACACGGGCCCTCCTGGTAAAGGGACATGATGATTGATGGTGCCTTGTCACAATGGCTGAAAGTCAACATGAGAGCTTGGTTGAGTGGTTGGGGCAGTACTGAAATGTTGGATAAAATTAAGAAAATGCCTAGTAGGACTCCTTAAATCAGCTGGCTGCCTATCAGCCAGCCCATAGGAACCCCCAAGAATTACAGAAACCAAGCAAAATTCTCTATGCCTTTCAAACCCAAGTCTAGCTTTTTTTTTTTAAAAGAATAACCGTTTATTAAAGTAGATACAGAACACTT</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG030495]][[Category:Transcripts]]

Latest revision as of 23:45, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT076844

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3132 nt

Genomic location

chr2-:217735164..217738655

Exon number

2

Exons

217735164..217735680,217736038..217738655

Genome context

Sequence
000001 GTCACTGACT TAACTGCCTG AGTAGCATCT GGCTTAGGAC TAGTGGTTCT GTCCTCTAGC CCTACTTCCC TATGCTCCTT 000080
000081 AAAAGACCCT TTTACCAGAA ATCTAAAATT ACCAGTCCCA TCAAGACAAG TATAAAGATA GCCTACTGCA GAAAGGCATC 000160
000161 CAGAAAGAGG AAGAAGGCCC TGAGTAGAAG GAACAAGGTA CCACAAAGGG TGAATGAACC TCTTAGGAAA AGGAAGCATA 000240
000241 ATGCTGACAC TTAGATGAGA CCCAAAGAAG GAGGATTTAA CCTCCCAGGG GCTGGAGGAA TATGAGGGTA GATAGAACCC 000320
000321 TGCCGGCCAG CTCTACCTAC CTCTTCCTTT GTGTGTCTTT TTTGAAGGTA TAATAGCACC ACTCTGACTT GGGTCTTAAC 000400
000401 TCAAGCACAT CCTAAGCTGT ATGATCTTAA GCAGGTTAAT CATTCCACCT GTTTCAATTA CGAAATCAGG ACCCTGATTA 000480
000481 CCTCGATGCT GCAACTGAGA TAAATGAAAT GATGATTCCA CAATCTGTAG TGCAGGGCCT GACAAACTGC AGTCTGCAGG 000560
000561 CCAAATCCAG CAAAGTTAAC AAGCCAGAGC TATTCACTTA CTATGGCTGC TTTCACCTGC AAAGAATAAA ACATCTGCTA 000640
000641 TCTGGCCCTA TAACTCTGTA GGGGCTCTCT CAAGTGGCCC TATCACCTCG CATAACTCAC AAAAGCTGCT GTAAGTTATA 000720
000721 ACTTGGGTCA TGGTTACTTA CCTCATACAA GACTTTCATC AATAAATATT GAACGCCCTA GACAGAAGAT TCAAATATTT 000800
000801 CACATCCTGA AGTTCTCCAC AATTATCAAT TTCAAAATTT TCTTCTAAGT TTCAAGTTTG AACATGTGAT GGATCTCCTG 000880
000881 GCACTGTTAA ATTTATTCTG GTTTTCTCCT GGACTATATG TCTTAGACTA TATTTACTAT ATGTACATTT CTTGGAGTAC 000960
000961 ATGGACATGT GAACAGGACC TGGCACATGG GCATTATTCA ATAGTAAAAC ATTTCCTATG TAAATGTAGC AAATATAGTG 001040
001041 AGGGTGTCAT GGAGGACAGC ACCAGAATGA CACAGGGAAG GCTATTGACC TCTTTGCCTT TGCCTTCTCC CTGAGATTAT 001120
001121 GCCAGTGTAT GCACAACATT ATTACAGCCT ACTACTGCCA GACACACTTA TAACCCATTA ACTGTAGCCT GTTACTACCA 001200
001201 GAGGTGCCTG TAACCCGTTA CCACGGCCTA CTACCATAAT ACATGCTTAT ATCCAATGAT ATAGCTATAT TACTACAGCC 001280
001281 TGCTACCACA AGAGCGACTT GTATTATTAC TACATACACT ACCTCAGGAC ACTCTGCTCT TGCGCCCAGG AACACCTGCT 001360
001361 ATAACATCTT TAAGCAATAA ATTGCCACCT CTCCACACCC CTACACTGAG TAAGGCCAAA TGTGACCACT GAAGAGCAAA 001440
001441 AGCAATCATC AAAGAAACCC AAGAAGCTCA TCAACATCTA GGAAATAGGA CAAAACCCTG GGGCCCACCT AAGTCAGATG 001520
001521 AACAATAAAA AGGCAGTTTC TGCATCTTTC ATGTTCCAAA GGAAATAGAG AATTGAGTTT TGAGGCCCCA ACCTTACAGA 001600
001601 TTAGCTTTGG TCTTGCTGGT AAATGGTTTT TAAAGATTGC ATTTATGATT CTCAGGGGGA GGCAAGCTGT GAGTAAGAGA 001680
001681 TGATTTGGTA CCTTTACATA AGTTATACAA GATTCAAGTT TAATTACACA AGGGATTCTA TAAAGCTGTA AGAATTATTT 001760
001761 GATCCCAAAT TGCCCAAACA CTACGTTATA TCTAGAGTAT ACTACCAGGA GAAGCTCGAG GATGTTGTCC TTTAAAGAAT 001840
001841 TCCAAATGCA CATATGCCTT TGTAAGTGTA CGTTGTGTCT TTGCACTTCC TCACATTTAC AATTCTTGGA CTTCATGATG 001920
001921 GATGACCTGG GCTTGTTTCT AGGAAAACAA GCATCTTCAT TTCTGCTAAC AAATGAATGA GAAGTGTGAG CTGATGGTGA 002000
002001 TCTGGTGGTT CACCTGGCTC AGCCTGCACT GGCCTTGTTT AGACGGTCTA TCAAACCAAA TAAGCCCTTA TCATATCCAG 002080
002081 AAAGCATCTC AATTTATCCC AAACAAAAGC CCAACCATGA ACATCATAGT AAATCTTTCA AACAGGAAAA AAAGGGTAAA 002160
002161 CTACATATTT CCTCCTGACT CACATGGTTC TCCCTCTGCT TACAACACCC ATCTGATTAC ATGAAGGGCT AGGGTACTAA 002240
002241 GGTCACTCAA CGTCACTCTT CAGCTAAACA GTAACACTCA AAAACACCTT TGTCAGAGAA AGAAGAGAAA GTTTATTTAG 002320
002321 AGACACTGGC GTGGAGAGGA ATAATCAATG ATGATTATGG TGGTCTTGGG CCTGCACCAA AAGCCCTTCT TTGTGCTGGC 002400
002401 CCTGGGAGAA CACATGGCAC AGAAAAGCCC AGATTCAAGC AGCTTCTTCA ACCAAAACAT TGACATATTC TGCTGACTAA 002480
002481 AGAGACAAAT AAGAAAATTA AAGATGTACA CTCCAAGAAC CCATGTGTTT TTCATATAGG GACCTTCCCA ACTCAGTTTC 002560
002561 CCAGAGATTC CATCAAATAC AGACCTTCAA AGAGTTTGAG AGTACCACCT CAAAGAGAGA TAATTTCCTT TCTTTTTGCC 002640
002641 TCTGTGGGGA ATATTTCAGA TGACATGCTG AACACCTATA CCTGCAGGCC TTCACCATCT TCTTCTGTTC CTCAACTCTG 002720
002721 GTCAGCATGA GGTTTTGGTT GAAACAGCAA GATCTGCCTG CTCCTACTGT TGTCCCTCTC TCCTACCGCA GGTCCATTTG 002800
002801 TCCAAAGCAG TCCACCCATC ATTCCCTTTA TATAGTGGCT TATGACACGG GCCCTCCTGG TAAAGGGACA TGATGATTGA 002880
002881 TGGTGCCTTG TCACAATGGC TGAAAGTCAA CATGAGAGCT TGGTTGAGTG GTTGGGGCAG TACTGAAATG TTGGATAAAA 002960
002961 TTAAGAAAAT GCCTAGTAGG ACTCCTTAAA TCAGCTGGCT GCCTATCAGC CAGCCCATAG GAACCCCCAA GAATTACAGA 003040
003041 AACCAAGCAA AATTCTCTAT GCCTTTCAAA CCCAAGTCTA GCTTTTTTTT TTTAAAAGAA TAACCGTTTA TTAAAGTAGA 003120
003121 TACAGAACAC TT
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Predicted Small Protein

Name NONHSAT076844_smProtein_71:253
Length 61
Molecular weight 7164.5136
Aromaticity 0.05
Instability index 71.6568333333
Isoelectric point 11.7512817383
Runs 6
Runs residual 0.0497340425532
Runs probability 0.0414679385268
Amino acid sequence MLLKRPFYQKSKITSPIKTSIKIAYCRKASRKRKKALSRRNKVPQRVNEPLRKRKHNADT
Secondary structure LLLLLLLLLLLLLLLLLLLLEEEHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHLLLLL
PRMN -
PiMo -