Difference between revisions of "NONHSAT077430"

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sequence = <dnaseq>GTGACGTGCGTGGCGACGTGTCGGCCATCTTGTGTTGTTGAGGCTGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAGATTATAGTGGGACCAGTCTCATTAGGTTGAATCTACAGCCTATGTTGGTGTTAACCCAGGTCTCTTAGAGCGTTAAAAGGATCTGAACAAAGTCTGCTCAAATCTCCTGCTGTGAACCAGCAGAATTTTTGAACAGagactgtctcgctctgtcacccaggctagagtgcagtggtgctatcgtaactcactggagccctgatctaggctcaaaccatcctcccacctcagcctcccaagtagctgggactaagATGCTGCTTGAATCTGGGGCTTCGTTTATATTTCAAGACTGCTGCCTGTAGGAGCTCCATCTGTATCATTTGTGTTAATAGTGACCCTGGAGTTTTGTACTTCCAGAACCTATGTTTCTTCACATATAAAAATCTATTGTAAAAATACGGAAAAGAATGGCAGCGGAAACGCAGACACTGAACTTTGGGCCTGAATGATGTGTTTGGACCCCGAATATGGAATTCTCATGGAATTTTGAGATCCATCACATTGTAGTGTGGCTTCCCCCCCTCCCCTCCTTCCTTTTTCCCCAAAGTTGGTGATTGAAGATCCTCTCTTCAGTGGCATCAATAATAATAATTACTTTTTCTATTCAAACCTCGGGCAACCCCTTTGGTAATATCAGAAGTAGTATCTAAAATAGATAAATTGGATTTGTGTCTTAAACTCTTGGTTGTTCAGGTGGGAGTGGTTCAATAAATGATGCAGACTTCCTGTAGTAACTCTATTTGAGGAGTCTTATTAACTTATCCTATTAGAAATATTTCTTTTTATTAATATATGTAATCTCGAAGTTTTCTTAACCTTTATAGCCAGCATTTGGAGACTGAGGAGAAATCACTATTTGAAGTTCTAAGAACCGATGGAACTCCTGTATTTTGAGAGTTTATTTAGAACATGTTAACCTAAGTAATGCTGTACTTGTTTTAGTTATTCCTTTATATTTTTAAAATGATTTTCTTAGTATCAAATTAATATGTTTCTAAAAAAATTAGAAATAACTAGTAAGCCAGAAataatttcaacatccatggtacacactgtaaataccttggtgtatctttccaggtggttttatgtatgcttatttgtgtatatatacacttattttttacaaaaatgggatcatactgtaccttcagttttgtagcctgcttaaagaaataaccaaatcagaaacatctttttttaatcaataaatattttctgttgtattaaatggttgcattgtatggatgtaccatcatttattcaactagtcttctagatgtgacatatagaagctgttcttgatttttcattataaaaatatttttaatgaa</dnaseq>|
 
sequence = <dnaseq>GTGACGTGCGTGGCGACGTGTCGGCCATCTTGTGTTGTTGAGGCTGAGGACTGACTGGGGTTCTGAGACTCCCTGTCCCGGACCGCAGATTATAGTGGGACCAGTCTCATTAGGTTGAATCTACAGCCTATGTTGGTGTTAACCCAGGTCTCTTAGAGCGTTAAAAGGATCTGAACAAAGTCTGCTCAAATCTCCTGCTGTGAACCAGCAGAATTTTTGAACAGagactgtctcgctctgtcacccaggctagagtgcagtggtgctatcgtaactcactggagccctgatctaggctcaaaccatcctcccacctcagcctcccaagtagctgggactaagATGCTGCTTGAATCTGGGGCTTCGTTTATATTTCAAGACTGCTGCCTGTAGGAGCTCCATCTGTATCATTTGTGTTAATAGTGACCCTGGAGTTTTGTACTTCCAGAACCTATGTTTCTTCACATATAAAAATCTATTGTAAAAATACGGAAAAGAATGGCAGCGGAAACGCAGACACTGAACTTTGGGCCTGAATGATGTGTTTGGACCCCGAATATGGAATTCTCATGGAATTTTGAGATCCATCACATTGTAGTGTGGCTTCCCCCCCTCCCCTCCTTCCTTTTTCCCCAAAGTTGGTGATTGAAGATCCTCTCTTCAGTGGCATCAATAATAATAATTACTTTTTCTATTCAAACCTCGGGCAACCCCTTTGGTAATATCAGAAGTAGTATCTAAAATAGATAAATTGGATTTGTGTCTTAAACTCTTGGTTGTTCAGGTGGGAGTGGTTCAATAAATGATGCAGACTTCCTGTAGTAACTCTATTTGAGGAGTCTTATTAACTTATCCTATTAGAAATATTTCTTTTTATTAATATATGTAATCTCGAAGTTTTCTTAACCTTTATAGCCAGCATTTGGAGACTGAGGAGAAATCACTATTTGAAGTTCTAAGAACCGATGGAACTCCTGTATTTTGAGAGTTTATTTAGAACATGTTAACCTAAGTAATGCTGTACTTGTTTTAGTTATTCCTTTATATTTTTAAAATGATTTTCTTAGTATCAAATTAATATGTTTCTAAAAAAATTAGAAATAACTAGTAAGCCAGAAataatttcaacatccatggtacacactgtaaataccttggtgtatctttccaggtggttttatgtatgcttatttgtgtatatatacacttattttttacaaaaatgggatcatactgtaccttcagttttgtagcctgcttaaagaaataaccaaatcagaaacatctttttttaatcaataaatattttctgttgtattaaatggttgcattgtatggatgtaccatcatttattcaactagtcttctagatgtgacatatagaagctgttcttgatttttcattataaaaatatttttaatgaa</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG030800]][[Category:Transcripts]]

Latest revision as of 23:48, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT077430

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1425 nt

Genomic location

chr2+:233562015..233601358

Exon number

7

Exons

233562015..233562102,233565295..233565364,233568134..233568199,233589284..233589401,233595832..233595944,233599865..233599948,233600473..233601358

Genome context

Sequence
000001 GTGACGTGCG TGGCGACGTG TCGGCCATCT TGTGTTGTTG AGGCTGAGGA CTGACTGGGG TTCTGAGACT CCCTGTCCCG 000080
000081 GACCGCAGAT TATAGTGGGA CCAGTCTCAT TAGGTTGAAT CTACAGCCTA TGTTGGTGTT AACCCAGGTC TCTTAGAGCG 000160
000161 TTAAAAGGAT CTGAACAAAG TCTGCTCAAA TCTCCTGCTG TGAACCAGCA GAATTTTTGA ACAGagactg tctcgctctg 000240
000241 tcacccaggc tagagtgcag tggtgctatc gtaactcact ggagccctga tctaggctca aaccatcctc ccacctcagc 000320
000321 ctcccaagta gctgggacta agATGCTGCT TGAATCTGGG GCTTCGTTTA TATTTCAAGA CTGCTGCCTG TAGGAGCTCC 000400
000401 ATCTGTATCA TTTGTGTTAA TAGTGACCCT GGAGTTTTGT ACTTCCAGAA CCTATGTTTC TTCACATATA AAAATCTATT 000480
000481 GTAAAAATAC GGAAAAGAAT GGCAGCGGAA ACGCAGACAC TGAACTTTGG GCCTGAATGA TGTGTTTGGA CCCCGAATAT 000560
000561 GGAATTCTCA TGGAATTTTG AGATCCATCA CATTGTAGTG TGGCTTCCCC CCCTCCCCTC CTTCCTTTTT CCCCAAAGTT 000640
000641 GGTGATTGAA GATCCTCTCT TCAGTGGCAT CAATAATAAT AATTACTTTT TCTATTCAAA CCTCGGGCAA CCCCTTTGGT 000720
000721 AATATCAGAA GTAGTATCTA AAATAGATAA ATTGGATTTG TGTCTTAAAC TCTTGGTTGT TCAGGTGGGA GTGGTTCAAT 000800
000801 AAATGATGCA GACTTCCTGT AGTAACTCTA TTTGAGGAGT CTTATTAACT TATCCTATTA GAAATATTTC TTTTTATTAA 000880
000881 TATATGTAAT CTCGAAGTTT TCTTAACCTT TATAGCCAGC ATTTGGAGAC TGAGGAGAAA TCACTATTTG AAGTTCTAAG 000960
000961 AACCGATGGA ACTCCTGTAT TTTGAGAGTT TATTTAGAAC ATGTTAACCT AAGTAATGCT GTACTTGTTT TAGTTATTCC 001040
001041 TTTATATTTT TAAAATGATT TTCTTAGTAT CAAATTAATA TGTTTCTAAA AAAATTAGAA ATAACTAGTA AGCCAGAAat 001120
001121 aatttcaaca tccatggtac acactgtaaa taccttggtg tatctttcca ggtggtttta tgtatgctta tttgtgtata 001200
001201 tatacactta ttttttacaa aaatgggatc atactgtacc ttcagttttg tagcctgctt aaagaaataa ccaaatcaga 001280
001281 aacatctttt tttaatcaat aaatattttc tgttgtatta aatggttgca ttgtatggat gtaccatcat ttattcaact 001360
001361 agtcttctag atgtgacata tagaagctgt tcttgatttt tcattataaa aatattttta atgaa
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Predicted Small Protein

Name NONHSAT077430_smProtein_1079:1252
Length 58
Molecular weight 6894.1228
Aromaticity 0.19298245614
Instability index 42.0633333333
Isoelectric point 8.85345458984
Runs 8
Runs residual 0.0135964912281
Runs probability 0.0461159689102
Amino acid sequence MFLKKLEITSKPEIISTSMVHTVNTLVYLSRWFYVCLFVYIYTYFLQKWDHTVPSVL
Secondary structure LLLEEEEELLLLEEEEELEEEEEEEEEEEEEEEEEEEEEEEEEHHHHHHLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTooooooooooooo