Difference between revisions of "NONHSAT083705"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>tggcacatgcctgtagtcctggctacttgggaggctgaggcaggaggatagcttgagcccaggagtttgaggttatggtgagctatgatcacaccagtgtgctccagcgtgggtgatacagagtgagaccctgtctctataaagtgacaactacaaaaacaaaCATTTGCTGACATAATCACAATGTCATTGTTACACTTTACATAATTGACAACAGTTCTCTGACATCAGCTGGTCATAGTCACCTCTCCTAGATGGGCCACAGAAGTCTTTCTAGACTTGGTTTGTCACCTCAGGACCCAGTGAGACTCACACATTCATTATGTTTGGCTGTTAGGCCTCTTAGGTTCCTTTTAACTAGGGTGATTGTATAATTAGTGTCTAAATTGGGAACCTTGTGAGAATGAAATGAAAGGGGGCCATATATGTGGCCACACAGGGGCAGCAAATGTACACTGGGATGGCCCTGGGTCCTTGGCCACTTCTGTTGAAGTCCCCTTTGAGGAGGGATAGCCTGTCTGGTGTCGTCCTCTGGCAAGTCCCACTTCCCGGGTTTGCGTCTGTTACGGTCTGCTGGTGGGTTGCTTCCTCCTCTGCCTGTATTTCTTGGACAGTTGCTCTAAAGCTCGATTGGATTCAGGCTCAGTTCCTTCAGTATATTTGTGTTCGTGGGTGCCTACACTAGTGTGGGGCTACTCACTTCTGTGTCACATGGAGAGGCCCAGCTTGCCTGGGGGTCCCACTTTCTGGAGCATTGAGAGTGAGCCCTCCACTGATTGTTGGACCAACAGCACCTGTAGCCCCCCAAGACACCAAGAAGACGAGAAAGAAGCCAAGACAGAAGAAACCAGAACCCAACCTCTTGTGGGACCGGTTGACCTCCCCATGCCTGCCACCAACCCTGCTGCCACCTCTGCCGCTACCACCACCATGGTCTCCGTGGTGACCTCATCACCCCCTGGCACCTGGGGCTGCCTTGCTTGCCTAAAGCCAAcattgaataatattccattgcctggatatgccacattttatcattcgcccaatgaaggatatcctggttgcctccaagttttgcaattatgaataaagcag</dnaseq>| | sequence = <dnaseq>tggcacatgcctgtagtcctggctacttgggaggctgaggcaggaggatagcttgagcccaggagtttgaggttatggtgagctatgatcacaccagtgtgctccagcgtgggtgatacagagtgagaccctgtctctataaagtgacaactacaaaaacaaaCATTTGCTGACATAATCACAATGTCATTGTTACACTTTACATAATTGACAACAGTTCTCTGACATCAGCTGGTCATAGTCACCTCTCCTAGATGGGCCACAGAAGTCTTTCTAGACTTGGTTTGTCACCTCAGGACCCAGTGAGACTCACACATTCATTATGTTTGGCTGTTAGGCCTCTTAGGTTCCTTTTAACTAGGGTGATTGTATAATTAGTGTCTAAATTGGGAACCTTGTGAGAATGAAATGAAAGGGGGCCATATATGTGGCCACACAGGGGCAGCAAATGTACACTGGGATGGCCCTGGGTCCTTGGCCACTTCTGTTGAAGTCCCCTTTGAGGAGGGATAGCCTGTCTGGTGTCGTCCTCTGGCAAGTCCCACTTCCCGGGTTTGCGTCTGTTACGGTCTGCTGGTGGGTTGCTTCCTCCTCTGCCTGTATTTCTTGGACAGTTGCTCTAAAGCTCGATTGGATTCAGGCTCAGTTCCTTCAGTATATTTGTGTTCGTGGGTGCCTACACTAGTGTGGGGCTACTCACTTCTGTGTCACATGGAGAGGCCCAGCTTGCCTGGGGGTCCCACTTTCTGGAGCATTGAGAGTGAGCCCTCCACTGATTGTTGGACCAACAGCACCTGTAGCCCCCCAAGACACCAAGAAGACGAGAAAGAAGCCAAGACAGAAGAAACCAGAACCCAACCTCTTGTGGGACCGGTTGACCTCCCCATGCCTGCCACCAACCCTGCTGCCACCTCTGCCGCTACCACCACCATGGTCTCCGTGGTGACCTCATCACCCCCTGGCACCTGGGGCTGCCTTGCTTGCCTAAAGCCAAcattgaataatattccattgcctggatatgccacattttatcattcgcccaatgaaggatatcctggttgcctccaagttttgcaattatgaataaagcag</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG033376]][[Category:Transcripts]] |
Latest revision as of 00:14, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT083705 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1095 nt |
| Genomic location |
chr22+:22014128..22016642 |
| Exon number |
3 |
| Exons |
22014128..22014936,22015126..22015310,22016542..22016642 |
| Genome context |
|
| Sequence |
000001 tggcacatgc ctgtagtcct ggctacttgg gaggctgagg caggaggata gcttgagccc aggagtttga ggttatggtg 000080
000081 agctatgatc acaccagtgt gctccagcgt gggtgataca gagtgagacc ctgtctctat aaagtgacaa ctacaaaaac 000160 000161 aaaCATTTGC TGACATAATC ACAATGTCAT TGTTACACTT TACATAATTG ACAACAGTTC TCTGACATCA GCTGGTCATA 000240 000241 GTCACCTCTC CTAGATGGGC CACAGAAGTC TTTCTAGACT TGGTTTGTCA CCTCAGGACC CAGTGAGACT CACACATTCA 000320 000321 TTATGTTTGG CTGTTAGGCC TCTTAGGTTC CTTTTAACTA GGGTGATTGT ATAATTAGTG TCTAAATTGG GAACCTTGTG 000400 000401 AGAATGAAAT GAAAGGGGGC CATATATGTG GCCACACAGG GGCAGCAAAT GTACACTGGG ATGGCCCTGG GTCCTTGGCC 000480 000481 ACTTCTGTTG AAGTCCCCTT TGAGGAGGGA TAGCCTGTCT GGTGTCGTCC TCTGGCAAGT CCCACTTCCC GGGTTTGCGT 000560 000561 CTGTTACGGT CTGCTGGTGG GTTGCTTCCT CCTCTGCCTG TATTTCTTGG ACAGTTGCTC TAAAGCTCGA TTGGATTCAG 000640 000641 GCTCAGTTCC TTCAGTATAT TTGTGTTCGT GGGTGCCTAC ACTAGTGTGG GGCTACTCAC TTCTGTGTCA CATGGAGAGG 000720 000721 CCCAGCTTGC CTGGGGGTCC CACTTTCTGG AGCATTGAGA GTGAGCCCTC CACTGATTGT TGGACCAACA GCACCTGTAG 000800 000801 CCCCCCAAGA CACCAAGAAG ACGAGAAAGA AGCCAAGACA GAAGAAACCA GAACCCAACC TCTTGTGGGA CCGGTTGACC 000880 000881 TCCCCATGCC TGCCACCAAC CCTGCTGCCA CCTCTGCCGC TACCACCACC ATGGTCTCCG TGGTGACCTC ATCACCCCCT 000960 000961 GGCACCTGGG GCTGCCTTGC TTGCCTAAAG CCAAcattga ataatattcc attgcctgga tatgccacat tttatcattc 001040 001041 gcccaatgaa ggatatcctg gttgcctcca agttttgcaa ttatgaataa agcag |
Predicted Small Protein
| Name | NONHSAT083705_smProtein_254:373 |
| Length | 40 |
| Molecular weight | 4409.2805 |
| Aromaticity | 0.025641025641 |
| Instability index | 64.6692307692 |
| Isoelectric point | 12.0003051758 |
| Runs | 7 |
| Runs residual | 0.0107466063348 |
| Runs probability | 0.0270144093674 |
| Amino acid sequence | MGHRSLSRLGLSPQDPVRLTHSLCLAVRPLRFLLTRVIV |
| Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHHLLLLHHHHHHLEEL |
| PRMN | - |
| PiMo | - |
