Difference between revisions of "NONHSAT088809"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>tcagtgatccaaatgcacattaaaatttgagagacactgGACTAATGcactggttctcaaattttctgcacatttgaattattttgagagctttaaaaatattgattcctgagtcctatccccagagattatgatttatttgtctggagtatagactgaacatcatatttttaaaagatcttagatgattctaatacgtaccaaagactagaaaccattgCTCTAGGCCATGAACCTGCACAGGTTTACAGCTTCTTACAGACAAGAAAGAAGTTGTACAACTCTTATTGCTGTAGATATCATGAATGATGATGTCAGCTTGTCCTTAATGGAAGCTTTGCTGCTTTCATTCTCTCTTTCCATTGGGATAAATCTATGCCCTCTACACATCATTTTACTGGACAGGGCCATAAACTACATAGAAATGGAGAGGGCATAGAGCTATGCAGATGGTGGTAAAACACTTAGGTACCTATATTCTTCTTTCTGGTTCTAGCCATTACTGTTTTATTGCCCTTCTTTCCCCTCTCCTGATGCACAGGTGCATTATGGTCACCGTGCATTCCTTCTCAGCAGCTGGGAATCCCCTGCAGCTGATGTCTTTGCTACTCCATTTGTTGGCAAGCAACTACTGTGTTGGTACCACTCCACATAAAAATTCACCAAGACTCCCAATCTCTGAGATTGAGGGAAACCTTTACGGACTAAATTGGATCTTCTAAAATGTTTCCTGGTTTTGGTGTGTGACAAATGTTTGTTCATACCAAGGTTTAGGAAATCCAGATGTTTAACAGGGCACTGATGGAAATCAAGGAGTTCCAATGTTTAAATCTTTCATGTGTTCTAGACCTATAGGTCTCAAAGAATGTGTCATCTTAAACAGTTTTAATTGTCTTTTCAGAATTGCAAGAATATATGATTAAATTTCATGTTCTTTGGTATATTTAGCTTTCAAAAAGCACCTATGCGATAAGAAAATTAAAAATCTGGACATTCTAGGCAGTTTAAGTGTAAACTTCTGCCACATATTTTCATTTCTCTGTGTACACCAAAGACAAATACTTATCTACAAAATTTGACCATTTTGATGATTATTATGAGACATTTGACAGCGTGGCTTATTGGAAACAGTCTAATTATATTTAGGGATTAAAAGAAATATTTCATTGATAAAAATATAAATATACTCTGATATATTGCCTTGAACCAGTGATTATAAGGAAAAGCATTAATTCATTCTCTATGTGAAAACACTCATTGAACATTTATCAATATCTATAAAGGTGGGAGGTTTCAAAAAATAAATAATACCAAATAGTAAATTAGGAAAGAAAAGATTGAATAGAGAGACTTTTCAAATTCTAAAGAAGAAATTTAGGGAATTTCAGCGACAGAATTAACCAAGAACTTCTGAAATTTGACATCACTGCAGGTATCCAGGACTACAAATAAAACCAGGAAAATTTATCAGGATAGGTGCTCTTCTTAGGCCTACTAACAACCAAATAAAATCACCTATGCCTCTCTGGATTCCAAAAATATATTCCTGATTGTGACCAATTCCGGAAATCCACTCTTGCCAGCATCTGTGAGaaac</dnaseq>| | sequence = <dnaseq>tcagtgatccaaatgcacattaaaatttgagagacactgGACTAATGcactggttctcaaattttctgcacatttgaattattttgagagctttaaaaatattgattcctgagtcctatccccagagattatgatttatttgtctggagtatagactgaacatcatatttttaaaagatcttagatgattctaatacgtaccaaagactagaaaccattgCTCTAGGCCATGAACCTGCACAGGTTTACAGCTTCTTACAGACAAGAAAGAAGTTGTACAACTCTTATTGCTGTAGATATCATGAATGATGATGTCAGCTTGTCCTTAATGGAAGCTTTGCTGCTTTCATTCTCTCTTTCCATTGGGATAAATCTATGCCCTCTACACATCATTTTACTGGACAGGGCCATAAACTACATAGAAATGGAGAGGGCATAGAGCTATGCAGATGGTGGTAAAACACTTAGGTACCTATATTCTTCTTTCTGGTTCTAGCCATTACTGTTTTATTGCCCTTCTTTCCCCTCTCCTGATGCACAGGTGCATTATGGTCACCGTGCATTCCTTCTCAGCAGCTGGGAATCCCCTGCAGCTGATGTCTTTGCTACTCCATTTGTTGGCAAGCAACTACTGTGTTGGTACCACTCCACATAAAAATTCACCAAGACTCCCAATCTCTGAGATTGAGGGAAACCTTTACGGACTAAATTGGATCTTCTAAAATGTTTCCTGGTTTTGGTGTGTGACAAATGTTTGTTCATACCAAGGTTTAGGAAATCCAGATGTTTAACAGGGCACTGATGGAAATCAAGGAGTTCCAATGTTTAAATCTTTCATGTGTTCTAGACCTATAGGTCTCAAAGAATGTGTCATCTTAAACAGTTTTAATTGTCTTTTCAGAATTGCAAGAATATATGATTAAATTTCATGTTCTTTGGTATATTTAGCTTTCAAAAAGCACCTATGCGATAAGAAAATTAAAAATCTGGACATTCTAGGCAGTTTAAGTGTAAACTTCTGCCACATATTTTCATTTCTCTGTGTACACCAAAGACAAATACTTATCTACAAAATTTGACCATTTTGATGATTATTATGAGACATTTGACAGCGTGGCTTATTGGAAACAGTCTAATTATATTTAGGGATTAAAAGAAATATTTCATTGATAAAAATATAAATATACTCTGATATATTGCCTTGAACCAGTGATTATAAGGAAAAGCATTAATTCATTCTCTATGTGAAAACACTCATTGAACATTTATCAATATCTATAAAGGTGGGAGGTTTCAAAAAATAAATAATACCAAATAGTAAATTAGGAAAGAAAAGATTGAATAGAGAGACTTTTCAAATTCTAAAGAAGAAATTTAGGGAATTTCAGCGACAGAATTAACCAAGAACTTCTGAAATTTGACATCACTGCAGGTATCCAGGACTACAAATAAAACCAGGAAAATTTATCAGGATAGGTGCTCTTCTTAGGCCTACTAACAACCAAATAAAATCACCTATGCCTCTCTGGATTCCAAAAATATATTCCTGATTGTGACCAATTCCGGAAATCCACTCTTGCCAGCATCTGTGAGaaac</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]] | + | [[Category:Intronic(S)]][[Category:NONHSAG034666]][[Category:Transcripts]] |
Latest revision as of 00:27, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT088809 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
1597 nt |
| Genomic location |
chr3+:30030355..30031951 |
| Exon number |
1 |
| Exons |
30030355..30031951 |
| Genome context |
|
| Sequence |
000001 tcagtgatcc aaatgcacat taaaatttga gagacactgG ACTAATGcac tggttctcaa attttctgca catttgaatt 000080
000081 attttgagag ctttaaaaat attgattcct gagtcctatc cccagagatt atgatttatt tgtctggagt atagactgaa 000160 000161 catcatattt ttaaaagatc ttagatgatt ctaatacgta ccaaagacta gaaaccattg CTCTAGGCCA TGAACCTGCA 000240 000241 CAGGTTTACA GCTTCTTACA GACAAGAAAG AAGTTGTACA ACTCTTATTG CTGTAGATAT CATGAATGAT GATGTCAGCT 000320 000321 TGTCCTTAAT GGAAGCTTTG CTGCTTTCAT TCTCTCTTTC CATTGGGATA AATCTATGCC CTCTACACAT CATTTTACTG 000400 000401 GACAGGGCCA TAAACTACAT AGAAATGGAG AGGGCATAGA GCTATGCAGA TGGTGGTAAA ACACTTAGGT ACCTATATTC 000480 000481 TTCTTTCTGG TTCTAGCCAT TACTGTTTTA TTGCCCTTCT TTCCCCTCTC CTGATGCACA GGTGCATTAT GGTCACCGTG 000560 000561 CATTCCTTCT CAGCAGCTGG GAATCCCCTG CAGCTGATGT CTTTGCTACT CCATTTGTTG GCAAGCAACT ACTGTGTTGG 000640 000641 TACCACTCCA CATAAAAATT CACCAAGACT CCCAATCTCT GAGATTGAGG GAAACCTTTA CGGACTAAAT TGGATCTTCT 000720 000721 AAAATGTTTC CTGGTTTTGG TGTGTGACAA ATGTTTGTTC ATACCAAGGT TTAGGAAATC CAGATGTTTA ACAGGGCACT 000800 000801 GATGGAAATC AAGGAGTTCC AATGTTTAAA TCTTTCATGT GTTCTAGACC TATAGGTCTC AAAGAATGTG TCATCTTAAA 000880 000881 CAGTTTTAAT TGTCTTTTCA GAATTGCAAG AATATATGAT TAAATTTCAT GTTCTTTGGT ATATTTAGCT TTCAAAAAGC 000960 000961 ACCTATGCGA TAAGAAAATT AAAAATCTGG ACATTCTAGG CAGTTTAAGT GTAAACTTCT GCCACATATT TTCATTTCTC 001040 001041 TGTGTACACC AAAGACAAAT ACTTATCTAC AAAATTTGAC CATTTTGATG ATTATTATGA GACATTTGAC AGCGTGGCTT 001120 001121 ATTGGAAACA GTCTAATTAT ATTTAGGGAT TAAAAGAAAT ATTTCATTGA TAAAAATATA AATATACTCT GATATATTGC 001200 001201 CTTGAACCAG TGATTATAAG GAAAAGCATT AATTCATTCT CTATGTGAAA ACACTCATTG AACATTTATC AATATCTATA 001280 001281 AAGGTGGGAG GTTTCAAAAA ATAAATAATA CCAAATAGTA AATTAGGAAA GAAAAGATTG AATAGAGAGA CTTTTCAAAT 001360 001361 TCTAAAGAAG AAATTTAGGG AATTTCAGCG ACAGAATTAA CCAAGAACTT CTGAAATTTG ACATCACTGC AGGTATCCAG 001440 001441 GACTACAAAT AAAACCAGGA AAATTTATCA GGATAGGTGC TCTTCTTAGG CCTACTAACA ACCAAATAAA ATCACCTATG 001520 001521 CCTCTCTGGA TTCCAAAAAT ATATTCCTGA TTGTGACCAA TTCCGGAAAT CCACTCTTGC CAGCATCTGT GAGaaac |
Predicted Small Protein
| Name | NONHSAT088809_smProtein_443:721 |
| Length | 93 |
| Molecular weight | 10226.0631 |
| Aromaticity | 0.0869565217391 |
| Instability index | 45.9108695652 |
| Isoelectric point | 8.57684326172 |
| Runs | 13 |
| Runs residual | 0.00609946825149 |
| Runs probability | 0.0544481132717 |
| Amino acid sequence | MQMVVKHLGTYILLSGSSHYCFIALLSPLLMHRCIMVTVHSFSAAGNPLQLMSLLLHLLA SNYCVGTTPHKNSPRLPISEIEGNLYGLNWIF |
| Secondary structure | LLHHHHHHLEEEEELLLLHHHHHHHHHHHHHLLEEEEEEEEELLLLLHHHHHHHHHHHHH HLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTT Tiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |
