Difference between revisions of "NONHSAT089378"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGCACGGTGTCAGCAGGCAACATGGCCGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGACACCCCCGCGGAATTCCCTCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGGGCGTATTCAACTGTCTGTGCGCCGGCGCGTTCGGGGCCCTGGCCGCCGCCTCCGCCAAGCTGGCCTTCGGCAGCGAGGTCGAGCCCGGGGCGCTGTTGGTGCTGCTGCTGCgggcgggcgggcggggcgccgctgggcggaggaggggcgctgcggggcccgcggggctcttggggtggggcgggggtgggcgCAGGGCGCCGCCGCACCCTCGCCGGTCTGTcccgccggggccccgggccgcgggcggcgcTGCGGTCAGCTGGGGTGGCAGAGAGTGTTTCGCCTCTAATCACGCCAAACCCTCGTCCAGTGTAGGTGGTAAGAGACGTCGGGGACTGAGGCCTCTTCCCTTACCAGGGACCTAAAACCTTTTCTCCGGTTGGGCTAGTTCGCTCTCGGGGAAGAACTACACCTCCTACATCCACCCTCTACCTCTCATTTTAAGTCCCTTGTGCCTGAGCATTTCTCTCCACGTGACTCTTAAGGTGAGAAGCCTCTTGCCCATCCCTTTACTCCGTAATTAACGGGTGTTGTGACCAGATGACCAGTCTGCCCCACTACCAGGAAAATTGGGAGTTTGGGATACTGTAGGCATAAGAGGATACTGACAGAGACGTTCTGGATGTTTTCCTGACGCTGAGAACTCCTAAACTTGCATCCTGGCGTCTGCTAAGGTGTATCTCTGCCTCTCCCTCCCACGTCGTAGACCAGCCTCTGCTTGCTATAGGGGTTTCATTGCGTCTGCAGCCCAAGGTTAGCCTCTGACCTGGACAGTGGTCACTGATTATTTAGGGTTAAGCCTATTTAGGGCTAATCCAGTAGTAGCTGCCATGCTTCAGGTTAGTATCCCATTGGGTGTAGTTCATGGGGTAAGTGGTCGAAAGTAAAATGAATAACTTTGTATGGGCCGTGAAGTTTGTTGTCAGGAACTAGACCTTCATAACCCTTTAAGCAGGTTGCCACTGGCCCATATGCTGCTTTGTGTAAGACAAGGTTGTCCAACTCgcggcccaacgcaaatttgcaaatttaaaacatgaatttttttgcgatttattattttttttttagctcatcatatatcattagtgttagtgtattatatgtgtgacccaagacagttcttccagtgtggcccagggaagccaaaaaattgaacaccctggtgtaagttataagcaagcacctttttctcaagacactatgtgttcagctgctgagaaaccattacaagtaataagtataTTTAGATTCCGCACCCCCCCCCCCCGCCGCCTTGTCTCCAGGCAGGTTTCTAACTCACCACCAAGCAAGGGGGACTGCATATCCTTTGTGTAGGAGGCTTCTAAAGATCTTCTCTTCTCTTGAGACTTTCTCCTTTAAAAAAAAAGAAAGAAAATACCTGCAAGTTCTCCAAGGGATGTCTGGGATCACTAAATAGTCTGAGGTGGTGTTTCCCTCAGGCAAGGCTGTGCCCtagttaagagcatggaggtacactgcctgcttgtgaagcctggtggctctcaccgctgtagcactttaggaaggttacttaatgcccctggctctttatctgtaaaatgaagttaaggaataaatgagaatgcttaaacacagcccaggacctaacacagagtaaaagctcaagaaTACCCAGAGGGGGTCAGCCTTAGTGGGCTGTAACTTGTATAGGATTTGGGGGTGGGAATACAGAGCAGACATTGCTAATTCATGCTTTGCCTGATCTCAAGAAATAAGAACTCTACCCTAGGCTTACTACCTACGGAGTAAGAACTACTTGGCCCTCTGGGACTGATCTTCAAGCACTGGTCATTGTGGGACCAATAAGGGGCCGGTGTTCAGTAGAAAATACTGGCTTTGGATTAGCATTTTGCTTCTTCCCAAGATCATATGGCCAGCAAGGTGGCCAAATGAGTATCTTCTCTGAATTTGCTTTATTTGTAAGATGGGTCTGCTGCCCACTGAGGGTTAAGTGAAGCCCTGTGCAGGAAAGCTCTGAGGCCCTCTGAGCTGTAGTGGGAGCTCAGTAGGAGCCTGGGTGCCAGCAACCACAGTCCTGGGTGTGCTTTGAGGGGGTCTGCAGGTTGCTGCCCAGGGTGGACGTGGCTGCAGTGACACTTTCTCCTGCAGGTGAGCATGGGTTTATGCGTCTTAGGCATTATTGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTTTCTCCATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTTTCAAATATCCTCAGCTCGGCCTTCCTGGGCTATGTGCTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGGAGTGTTCCTTATTCTCTGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACCTGGAAGCCCCTTCCACACAAGCAGCAGTAGCACCACTTGGCTAGACGGACCAGCTGGAAAGATCATGATGGTGGCCCAGCCTTGGGATGTCATGTGGGACTGTATCCTAGGGCGATCCAGTTGTGCAGCCTTCTGACCATCAGCCAAGGGAAGCAGGCCTCTGATGGAGCAGGCTCTGGCTCTGTAAGGAGAGGTGCAGCTGCAGCAGTGTTCTACCGGAAGTGTTTTGATCATCTGTACAGTGCTTTGGATTCTTCCTCCCAGGCCTACCCCAGTGAGCCTTCGCAGATGCTGGAGATCCTGGGGTTGGTCTGCTTTGTGTATGGTACTTGAAACCACGCTGTAATTATTGTCCTGTTGCCAAACAAAAGCCAGTCATGTAACTCTAGAAGCAGTGACTGGTGGGGCTTTCTGACAGTTCCATGCTGATGTATCAGGCCATCTGTGTCATGCTTATGTATTATGGCAAGAAGAGGAAAACTGGATTAATAAATACGTTTTTTGTAAGTTAAAACTACCA</dnaseq>| | sequence = <dnaseq>GGCACGGTGTCAGCAGGCAACATGGCCGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGACACCCCCGCGGAATTCCCTCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGGGCGTATTCAACTGTCTGTGCGCCGGCGCGTTCGGGGCCCTGGCCGCCGCCTCCGCCAAGCTGGCCTTCGGCAGCGAGGTCGAGCCCGGGGCGCTGTTGGTGCTGCTGCTGCgggcgggcgggcggggcgccgctgggcggaggaggggcgctgcggggcccgcggggctcttggggtggggcgggggtgggcgCAGGGCGCCGCCGCACCCTCGCCGGTCTGTcccgccggggccccgggccgcgggcggcgcTGCGGTCAGCTGGGGTGGCAGAGAGTGTTTCGCCTCTAATCACGCCAAACCCTCGTCCAGTGTAGGTGGTAAGAGACGTCGGGGACTGAGGCCTCTTCCCTTACCAGGGACCTAAAACCTTTTCTCCGGTTGGGCTAGTTCGCTCTCGGGGAAGAACTACACCTCCTACATCCACCCTCTACCTCTCATTTTAAGTCCCTTGTGCCTGAGCATTTCTCTCCACGTGACTCTTAAGGTGAGAAGCCTCTTGCCCATCCCTTTACTCCGTAATTAACGGGTGTTGTGACCAGATGACCAGTCTGCCCCACTACCAGGAAAATTGGGAGTTTGGGATACTGTAGGCATAAGAGGATACTGACAGAGACGTTCTGGATGTTTTCCTGACGCTGAGAACTCCTAAACTTGCATCCTGGCGTCTGCTAAGGTGTATCTCTGCCTCTCCCTCCCACGTCGTAGACCAGCCTCTGCTTGCTATAGGGGTTTCATTGCGTCTGCAGCCCAAGGTTAGCCTCTGACCTGGACAGTGGTCACTGATTATTTAGGGTTAAGCCTATTTAGGGCTAATCCAGTAGTAGCTGCCATGCTTCAGGTTAGTATCCCATTGGGTGTAGTTCATGGGGTAAGTGGTCGAAAGTAAAATGAATAACTTTGTATGGGCCGTGAAGTTTGTTGTCAGGAACTAGACCTTCATAACCCTTTAAGCAGGTTGCCACTGGCCCATATGCTGCTTTGTGTAAGACAAGGTTGTCCAACTCgcggcccaacgcaaatttgcaaatttaaaacatgaatttttttgcgatttattattttttttttagctcatcatatatcattagtgttagtgtattatatgtgtgacccaagacagttcttccagtgtggcccagggaagccaaaaaattgaacaccctggtgtaagttataagcaagcacctttttctcaagacactatgtgttcagctgctgagaaaccattacaagtaataagtataTTTAGATTCCGCACCCCCCCCCCCCGCCGCCTTGTCTCCAGGCAGGTTTCTAACTCACCACCAAGCAAGGGGGACTGCATATCCTTTGTGTAGGAGGCTTCTAAAGATCTTCTCTTCTCTTGAGACTTTCTCCTTTAAAAAAAAAGAAAGAAAATACCTGCAAGTTCTCCAAGGGATGTCTGGGATCACTAAATAGTCTGAGGTGGTGTTTCCCTCAGGCAAGGCTGTGCCCtagttaagagcatggaggtacactgcctgcttgtgaagcctggtggctctcaccgctgtagcactttaggaaggttacttaatgcccctggctctttatctgtaaaatgaagttaaggaataaatgagaatgcttaaacacagcccaggacctaacacagagtaaaagctcaagaaTACCCAGAGGGGGTCAGCCTTAGTGGGCTGTAACTTGTATAGGATTTGGGGGTGGGAATACAGAGCAGACATTGCTAATTCATGCTTTGCCTGATCTCAAGAAATAAGAACTCTACCCTAGGCTTACTACCTACGGAGTAAGAACTACTTGGCCCTCTGGGACTGATCTTCAAGCACTGGTCATTGTGGGACCAATAAGGGGCCGGTGTTCAGTAGAAAATACTGGCTTTGGATTAGCATTTTGCTTCTTCCCAAGATCATATGGCCAGCAAGGTGGCCAAATGAGTATCTTCTCTGAATTTGCTTTATTTGTAAGATGGGTCTGCTGCCCACTGAGGGTTAAGTGAAGCCCTGTGCAGGAAAGCTCTGAGGCCCTCTGAGCTGTAGTGGGAGCTCAGTAGGAGCCTGGGTGCCAGCAACCACAGTCCTGGGTGTGCTTTGAGGGGGTCTGCAGGTTGCTGCCCAGGGTGGACGTGGCTGCAGTGACACTTTCTCCTGCAGGTGAGCATGGGTTTATGCGTCTTAGGCATTATTGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTTTCTCCATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTTTCAAATATCCTCAGCTCGGCCTTCCTGGGCTATGTGCTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGGAGTGTTCCTTATTCTCTGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACCTGGAAGCCCCTTCCACACAAGCAGCAGTAGCACCACTTGGCTAGACGGACCAGCTGGAAAGATCATGATGGTGGCCCAGCCTTGGGATGTCATGTGGGACTGTATCCTAGGGCGATCCAGTTGTGCAGCCTTCTGACCATCAGCCAAGGGAAGCAGGCCTCTGATGGAGCAGGCTCTGGCTCTGTAAGGAGAGGTGCAGCTGCAGCAGTGTTCTACCGGAAGTGTTTTGATCATCTGTACAGTGCTTTGGATTCTTCCTCCCAGGCCTACCCCAGTGAGCCTTCGCAGATGCTGGAGATCCTGGGGTTGGTCTGCTTTGTGTATGGTACTTGAAACCACGCTGTAATTATTGTCCTGTTGCCAAACAAAAGCCAGTCATGTAACTCTAGAAGCAGTGACTGGTGGGGCTTTCTGACAGTTCCATGCTGATGTATCAGGCCATCTGTGTCATGCTTATGTATTATGGCAAGAAGAGGAAAACTGGATTAATAAATACGTTTTTTGTAAGTTAAAACTACCA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG034925]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 00:30, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT089378 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3071 nt |
Genomic location |
chr3+:44903396..44907162 |
Exon number |
2 |
Exons |
44903396..44905835,44906532..44907162 |
Genome context |
|
Sequence |
000001 GGCACGGTGT CAGCAGGCAA CATGGCCGAG AGGCCGGGGC CTCCGGGCGG CGCCGTGTCC GCGACCGCGT ACCCTGACAC 000080
000081 CCCCGCGGAA TTCCCTCCGC ACCTCCAGGC GGGTGCGATG CGGCGCCGCT TTTGGGGCGT ATTCAACTGT CTGTGCGCCG 000160 000161 GCGCGTTCGG GGCCCTGGCC GCCGCCTCCG CCAAGCTGGC CTTCGGCAGC GAGGTCGAGC CCGGGGCGCT GTTGGTGCTG 000240 000241 CTGCTGCggg cgggcgggcg gggcgccgct gggcggagga ggggcgctgc ggggcccgcg gggctcttgg ggtggggcgg 000320 000321 gggtgggcgC AGGGCGCCGC CGCACCCTCG CCGGTCTGTc ccgccggggc cccgggccgc gggcggcgcT GCGGTCAGCT 000400 000401 GGGGTGGCAG AGAGTGTTTC GCCTCTAATC ACGCCAAACC CTCGTCCAGT GTAGGTGGTA AGAGACGTCG GGGACTGAGG 000480 000481 CCTCTTCCCT TACCAGGGAC CTAAAACCTT TTCTCCGGTT GGGCTAGTTC GCTCTCGGGG AAGAACTACA CCTCCTACAT 000560 000561 CCACCCTCTA CCTCTCATTT TAAGTCCCTT GTGCCTGAGC ATTTCTCTCC ACGTGACTCT TAAGGTGAGA AGCCTCTTGC 000640 000641 CCATCCCTTT ACTCCGTAAT TAACGGGTGT TGTGACCAGA TGACCAGTCT GCCCCACTAC CAGGAAAATT GGGAGTTTGG 000720 000721 GATACTGTAG GCATAAGAGG ATACTGACAG AGACGTTCTG GATGTTTTCC TGACGCTGAG AACTCCTAAA CTTGCATCCT 000800 000801 GGCGTCTGCT AAGGTGTATC TCTGCCTCTC CCTCCCACGT CGTAGACCAG CCTCTGCTTG CTATAGGGGT TTCATTGCGT 000880 000881 CTGCAGCCCA AGGTTAGCCT CTGACCTGGA CAGTGGTCAC TGATTATTTA GGGTTAAGCC TATTTAGGGC TAATCCAGTA 000960 000961 GTAGCTGCCA TGCTTCAGGT TAGTATCCCA TTGGGTGTAG TTCATGGGGT AAGTGGTCGA AAGTAAAATG AATAACTTTG 001040 001041 TATGGGCCGT GAAGTTTGTT GTCAGGAACT AGACCTTCAT AACCCTTTAA GCAGGTTGCC ACTGGCCCAT ATGCTGCTTT 001120 001121 GTGTAAGACA AGGTTGTCCA ACTCgcggcc caacgcaaat ttgcaaattt aaaacatgaa tttttttgcg atttattatt 001200 001201 ttttttttag ctcatcatat atcattagtg ttagtgtatt atatgtgtga cccaagacag ttcttccagt gtggcccagg 001280 001281 gaagccaaaa aattgaacac cctggtgtaa gttataagca agcacctttt tctcaagaca ctatgtgttc agctgctgag 001360 001361 aaaccattac aagtaataag tataTTTAGA TTCCGCACCC CCCCCCCCCG CCGCCTTGTC TCCAGGCAGG TTTCTAACTC 001440 001441 ACCACCAAGC AAGGGGGACT GCATATCCTT TGTGTAGGAG GCTTCTAAAG ATCTTCTCTT CTCTTGAGAC TTTCTCCTTT 001520 001521 AAAAAAAAAG AAAGAAAATA CCTGCAAGTT CTCCAAGGGA TGTCTGGGAT CACTAAATAG TCTGAGGTGG TGTTTCCCTC 001600 001601 AGGCAAGGCT GTGCCCtagt taagagcatg gaggtacact gcctgcttgt gaagcctggt ggctctcacc gctgtagcac 001680 001681 tttaggaagg ttacttaatg cccctggctc tttatctgta aaatgaagtt aaggaataaa tgagaatgct taaacacagc 001760 001761 ccaggaccta acacagagta aaagctcaag aaTACCCAGA GGGGGTCAGC CTTAGTGGGC TGTAACTTGT ATAGGATTTG 001840 001841 GGGGTGGGAA TACAGAGCAG ACATTGCTAA TTCATGCTTT GCCTGATCTC AAGAAATAAG AACTCTACCC TAGGCTTACT 001920 001921 ACCTACGGAG TAAGAACTAC TTGGCCCTCT GGGACTGATC TTCAAGCACT GGTCATTGTG GGACCAATAA GGGGCCGGTG 002000 002001 TTCAGTAGAA AATACTGGCT TTGGATTAGC ATTTTGCTTC TTCCCAAGAT CATATGGCCA GCAAGGTGGC CAAATGAGTA 002080 002081 TCTTCTCTGA ATTTGCTTTA TTTGTAAGAT GGGTCTGCTG CCCACTGAGG GTTAAGTGAA GCCCTGTGCA GGAAAGCTCT 002160 002161 GAGGCCCTCT GAGCTGTAGT GGGAGCTCAG TAGGAGCCTG GGTGCCAGCA ACCACAGTCC TGGGTGTGCT TTGAGGGGGT 002240 002241 CTGCAGGTTG CTGCCCAGGG TGGACGTGGC TGCAGTGACA CTTTCTCCTG CAGGTGAGCA TGGGTTTATG CGTCTTAGGC 002320 002321 ATTATTGTGA TGGCGAGCAC CAATTCTCTG ATGTGGACCT TCTTTAGCCG GGGCCTCAGT TTCTCCATGT CTTCAGCCAT 002400 002401 TGCATCTGTC ACAGTGACTT TTTCAAATAT CCTCAGCTCG GCCTTCCTGG GCTATGTGCT GTATGGAGAG TGCCAGGAGG 002480 002481 TCTTGTGGTG GGGAGGAGTG TTCCTTATTC TCTGCGGACT CACCCTAATC CACAGGAAGC TCCCACCCAC CTGGAAGCCC 002560 002561 CTTCCACACA AGCAGCAGTA GCACCACTTG GCTAGACGGA CCAGCTGGAA AGATCATGAT GGTGGCCCAG CCTTGGGATG 002640 002641 TCATGTGGGA CTGTATCCTA GGGCGATCCA GTTGTGCAGC CTTCTGACCA TCAGCCAAGG GAAGCAGGCC TCTGATGGAG 002720 002721 CAGGCTCTGG CTCTGTAAGG AGAGGTGCAG CTGCAGCAGT GTTCTACCGG AAGTGTTTTG ATCATCTGTA CAGTGCTTTG 002800 002801 GATTCTTCCT CCCAGGCCTA CCCCAGTGAG CCTTCGCAGA TGCTGGAGAT CCTGGGGTTG GTCTGCTTTG TGTATGGTAC 002880 002881 TTGAAACCAC GCTGTAATTA TTGTCCTGTT GCCAAACAAA AGCCAGTCAT GTAACTCTAG AAGCAGTGAC TGGTGGGGCT 002960 002961 TTCTGACAGT TCCATGCTGA TGTATCAGGC CATCTGTGTC ATGCTTATGT ATTATGGCAA GAAGAGGAAA ACTGGATTAA 003040 003041 TAAATACGTT TTTTGTAAGT TAAAACTACC A |
Predicted Small Protein
Name | NONHSAT089378_smProtein_2453:2527 |
Length | 25 |
Molecular weight | 2556.8712 |
Aromaticity | 0.0416666666667 |
Instability index | 143.6375 |
Isoelectric point | 4.40655517578 |
Runs | 5 |
Runs residual | 0.0267857142857 |
Runs probability | 0.0471294824237 |
Amino acid sequence | MCCMESARRSCGGEECSLFSADSP |
Secondary structure | LLLHHHHHHLLLLLLLLEELLLLL |
PRMN | - |
PiMo | - |