Difference between revisions of "NONHSAT089378"

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sequence = <dnaseq>GGCACGGTGTCAGCAGGCAACATGGCCGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGACACCCCCGCGGAATTCCCTCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGGGCGTATTCAACTGTCTGTGCGCCGGCGCGTTCGGGGCCCTGGCCGCCGCCTCCGCCAAGCTGGCCTTCGGCAGCGAGGTCGAGCCCGGGGCGCTGTTGGTGCTGCTGCTGCgggcgggcgggcggggcgccgctgggcggaggaggggcgctgcggggcccgcggggctcttggggtggggcgggggtgggcgCAGGGCGCCGCCGCACCCTCGCCGGTCTGTcccgccggggccccgggccgcgggcggcgcTGCGGTCAGCTGGGGTGGCAGAGAGTGTTTCGCCTCTAATCACGCCAAACCCTCGTCCAGTGTAGGTGGTAAGAGACGTCGGGGACTGAGGCCTCTTCCCTTACCAGGGACCTAAAACCTTTTCTCCGGTTGGGCTAGTTCGCTCTCGGGGAAGAACTACACCTCCTACATCCACCCTCTACCTCTCATTTTAAGTCCCTTGTGCCTGAGCATTTCTCTCCACGTGACTCTTAAGGTGAGAAGCCTCTTGCCCATCCCTTTACTCCGTAATTAACGGGTGTTGTGACCAGATGACCAGTCTGCCCCACTACCAGGAAAATTGGGAGTTTGGGATACTGTAGGCATAAGAGGATACTGACAGAGACGTTCTGGATGTTTTCCTGACGCTGAGAACTCCTAAACTTGCATCCTGGCGTCTGCTAAGGTGTATCTCTGCCTCTCCCTCCCACGTCGTAGACCAGCCTCTGCTTGCTATAGGGGTTTCATTGCGTCTGCAGCCCAAGGTTAGCCTCTGACCTGGACAGTGGTCACTGATTATTTAGGGTTAAGCCTATTTAGGGCTAATCCAGTAGTAGCTGCCATGCTTCAGGTTAGTATCCCATTGGGTGTAGTTCATGGGGTAAGTGGTCGAAAGTAAAATGAATAACTTTGTATGGGCCGTGAAGTTTGTTGTCAGGAACTAGACCTTCATAACCCTTTAAGCAGGTTGCCACTGGCCCATATGCTGCTTTGTGTAAGACAAGGTTGTCCAACTCgcggcccaacgcaaatttgcaaatttaaaacatgaatttttttgcgatttattattttttttttagctcatcatatatcattagtgttagtgtattatatgtgtgacccaagacagttcttccagtgtggcccagggaagccaaaaaattgaacaccctggtgtaagttataagcaagcacctttttctcaagacactatgtgttcagctgctgagaaaccattacaagtaataagtataTTTAGATTCCGCACCCCCCCCCCCCGCCGCCTTGTCTCCAGGCAGGTTTCTAACTCACCACCAAGCAAGGGGGACTGCATATCCTTTGTGTAGGAGGCTTCTAAAGATCTTCTCTTCTCTTGAGACTTTCTCCTTTAAAAAAAAAGAAAGAAAATACCTGCAAGTTCTCCAAGGGATGTCTGGGATCACTAAATAGTCTGAGGTGGTGTTTCCCTCAGGCAAGGCTGTGCCCtagttaagagcatggaggtacactgcctgcttgtgaagcctggtggctctcaccgctgtagcactttaggaaggttacttaatgcccctggctctttatctgtaaaatgaagttaaggaataaatgagaatgcttaaacacagcccaggacctaacacagagtaaaagctcaagaaTACCCAGAGGGGGTCAGCCTTAGTGGGCTGTAACTTGTATAGGATTTGGGGGTGGGAATACAGAGCAGACATTGCTAATTCATGCTTTGCCTGATCTCAAGAAATAAGAACTCTACCCTAGGCTTACTACCTACGGAGTAAGAACTACTTGGCCCTCTGGGACTGATCTTCAAGCACTGGTCATTGTGGGACCAATAAGGGGCCGGTGTTCAGTAGAAAATACTGGCTTTGGATTAGCATTTTGCTTCTTCCCAAGATCATATGGCCAGCAAGGTGGCCAAATGAGTATCTTCTCTGAATTTGCTTTATTTGTAAGATGGGTCTGCTGCCCACTGAGGGTTAAGTGAAGCCCTGTGCAGGAAAGCTCTGAGGCCCTCTGAGCTGTAGTGGGAGCTCAGTAGGAGCCTGGGTGCCAGCAACCACAGTCCTGGGTGTGCTTTGAGGGGGTCTGCAGGTTGCTGCCCAGGGTGGACGTGGCTGCAGTGACACTTTCTCCTGCAGGTGAGCATGGGTTTATGCGTCTTAGGCATTATTGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTTTCTCCATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTTTCAAATATCCTCAGCTCGGCCTTCCTGGGCTATGTGCTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGGAGTGTTCCTTATTCTCTGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACCTGGAAGCCCCTTCCACACAAGCAGCAGTAGCACCACTTGGCTAGACGGACCAGCTGGAAAGATCATGATGGTGGCCCAGCCTTGGGATGTCATGTGGGACTGTATCCTAGGGCGATCCAGTTGTGCAGCCTTCTGACCATCAGCCAAGGGAAGCAGGCCTCTGATGGAGCAGGCTCTGGCTCTGTAAGGAGAGGTGCAGCTGCAGCAGTGTTCTACCGGAAGTGTTTTGATCATCTGTACAGTGCTTTGGATTCTTCCTCCCAGGCCTACCCCAGTGAGCCTTCGCAGATGCTGGAGATCCTGGGGTTGGTCTGCTTTGTGTATGGTACTTGAAACCACGCTGTAATTATTGTCCTGTTGCCAAACAAAAGCCAGTCATGTAACTCTAGAAGCAGTGACTGGTGGGGCTTTCTGACAGTTCCATGCTGATGTATCAGGCCATCTGTGTCATGCTTATGTATTATGGCAAGAAGAGGAAAACTGGATTAATAAATACGTTTTTTGTAAGTTAAAACTACCA</dnaseq>|
 
sequence = <dnaseq>GGCACGGTGTCAGCAGGCAACATGGCCGAGAGGCCGGGGCCTCCGGGCGGCGCCGTGTCCGCGACCGCGTACCCTGACACCCCCGCGGAATTCCCTCCGCACCTCCAGGCGGGTGCGATGCGGCGCCGCTTTTGGGGCGTATTCAACTGTCTGTGCGCCGGCGCGTTCGGGGCCCTGGCCGCCGCCTCCGCCAAGCTGGCCTTCGGCAGCGAGGTCGAGCCCGGGGCGCTGTTGGTGCTGCTGCTGCgggcgggcgggcggggcgccgctgggcggaggaggggcgctgcggggcccgcggggctcttggggtggggcgggggtgggcgCAGGGCGCCGCCGCACCCTCGCCGGTCTGTcccgccggggccccgggccgcgggcggcgcTGCGGTCAGCTGGGGTGGCAGAGAGTGTTTCGCCTCTAATCACGCCAAACCCTCGTCCAGTGTAGGTGGTAAGAGACGTCGGGGACTGAGGCCTCTTCCCTTACCAGGGACCTAAAACCTTTTCTCCGGTTGGGCTAGTTCGCTCTCGGGGAAGAACTACACCTCCTACATCCACCCTCTACCTCTCATTTTAAGTCCCTTGTGCCTGAGCATTTCTCTCCACGTGACTCTTAAGGTGAGAAGCCTCTTGCCCATCCCTTTACTCCGTAATTAACGGGTGTTGTGACCAGATGACCAGTCTGCCCCACTACCAGGAAAATTGGGAGTTTGGGATACTGTAGGCATAAGAGGATACTGACAGAGACGTTCTGGATGTTTTCCTGACGCTGAGAACTCCTAAACTTGCATCCTGGCGTCTGCTAAGGTGTATCTCTGCCTCTCCCTCCCACGTCGTAGACCAGCCTCTGCTTGCTATAGGGGTTTCATTGCGTCTGCAGCCCAAGGTTAGCCTCTGACCTGGACAGTGGTCACTGATTATTTAGGGTTAAGCCTATTTAGGGCTAATCCAGTAGTAGCTGCCATGCTTCAGGTTAGTATCCCATTGGGTGTAGTTCATGGGGTAAGTGGTCGAAAGTAAAATGAATAACTTTGTATGGGCCGTGAAGTTTGTTGTCAGGAACTAGACCTTCATAACCCTTTAAGCAGGTTGCCACTGGCCCATATGCTGCTTTGTGTAAGACAAGGTTGTCCAACTCgcggcccaacgcaaatttgcaaatttaaaacatgaatttttttgcgatttattattttttttttagctcatcatatatcattagtgttagtgtattatatgtgtgacccaagacagttcttccagtgtggcccagggaagccaaaaaattgaacaccctggtgtaagttataagcaagcacctttttctcaagacactatgtgttcagctgctgagaaaccattacaagtaataagtataTTTAGATTCCGCACCCCCCCCCCCCGCCGCCTTGTCTCCAGGCAGGTTTCTAACTCACCACCAAGCAAGGGGGACTGCATATCCTTTGTGTAGGAGGCTTCTAAAGATCTTCTCTTCTCTTGAGACTTTCTCCTTTAAAAAAAAAGAAAGAAAATACCTGCAAGTTCTCCAAGGGATGTCTGGGATCACTAAATAGTCTGAGGTGGTGTTTCCCTCAGGCAAGGCTGTGCCCtagttaagagcatggaggtacactgcctgcttgtgaagcctggtggctctcaccgctgtagcactttaggaaggttacttaatgcccctggctctttatctgtaaaatgaagttaaggaataaatgagaatgcttaaacacagcccaggacctaacacagagtaaaagctcaagaaTACCCAGAGGGGGTCAGCCTTAGTGGGCTGTAACTTGTATAGGATTTGGGGGTGGGAATACAGAGCAGACATTGCTAATTCATGCTTTGCCTGATCTCAAGAAATAAGAACTCTACCCTAGGCTTACTACCTACGGAGTAAGAACTACTTGGCCCTCTGGGACTGATCTTCAAGCACTGGTCATTGTGGGACCAATAAGGGGCCGGTGTTCAGTAGAAAATACTGGCTTTGGATTAGCATTTTGCTTCTTCCCAAGATCATATGGCCAGCAAGGTGGCCAAATGAGTATCTTCTCTGAATTTGCTTTATTTGTAAGATGGGTCTGCTGCCCACTGAGGGTTAAGTGAAGCCCTGTGCAGGAAAGCTCTGAGGCCCTCTGAGCTGTAGTGGGAGCTCAGTAGGAGCCTGGGTGCCAGCAACCACAGTCCTGGGTGTGCTTTGAGGGGGTCTGCAGGTTGCTGCCCAGGGTGGACGTGGCTGCAGTGACACTTTCTCCTGCAGGTGAGCATGGGTTTATGCGTCTTAGGCATTATTGTGATGGCGAGCACCAATTCTCTGATGTGGACCTTCTTTAGCCGGGGCCTCAGTTTCTCCATGTCTTCAGCCATTGCATCTGTCACAGTGACTTTTTCAAATATCCTCAGCTCGGCCTTCCTGGGCTATGTGCTGTATGGAGAGTGCCAGGAGGTCTTGTGGTGGGGAGGAGTGTTCCTTATTCTCTGCGGACTCACCCTAATCCACAGGAAGCTCCCACCCACCTGGAAGCCCCTTCCACACAAGCAGCAGTAGCACCACTTGGCTAGACGGACCAGCTGGAAAGATCATGATGGTGGCCCAGCCTTGGGATGTCATGTGGGACTGTATCCTAGGGCGATCCAGTTGTGCAGCCTTCTGACCATCAGCCAAGGGAAGCAGGCCTCTGATGGAGCAGGCTCTGGCTCTGTAAGGAGAGGTGCAGCTGCAGCAGTGTTCTACCGGAAGTGTTTTGATCATCTGTACAGTGCTTTGGATTCTTCCTCCCAGGCCTACCCCAGTGAGCCTTCGCAGATGCTGGAGATCCTGGGGTTGGTCTGCTTTGTGTATGGTACTTGAAACCACGCTGTAATTATTGTCCTGTTGCCAAACAAAAGCCAGTCATGTAACTCTAGAAGCAGTGACTGGTGGGGCTTTCTGACAGTTCCATGCTGATGTATCAGGCCATCTGTGTCATGCTTATGTATTATGGCAAGAAGAGGAAAACTGGATTAATAAATACGTTTTTTGTAAGTTAAAACTACCA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG034925]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 00:30, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089378

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3071 nt

Genomic location

chr3+:44903396..44907162

Exon number

2

Exons

44903396..44905835,44906532..44907162

Genome context

Sequence
000001 GGCACGGTGT CAGCAGGCAA CATGGCCGAG AGGCCGGGGC CTCCGGGCGG CGCCGTGTCC GCGACCGCGT ACCCTGACAC 000080
000081 CCCCGCGGAA TTCCCTCCGC ACCTCCAGGC GGGTGCGATG CGGCGCCGCT TTTGGGGCGT ATTCAACTGT CTGTGCGCCG 000160
000161 GCGCGTTCGG GGCCCTGGCC GCCGCCTCCG CCAAGCTGGC CTTCGGCAGC GAGGTCGAGC CCGGGGCGCT GTTGGTGCTG 000240
000241 CTGCTGCggg cgggcgggcg gggcgccgct gggcggagga ggggcgctgc ggggcccgcg gggctcttgg ggtggggcgg 000320
000321 gggtgggcgC AGGGCGCCGC CGCACCCTCG CCGGTCTGTc ccgccggggc cccgggccgc gggcggcgcT GCGGTCAGCT 000400
000401 GGGGTGGCAG AGAGTGTTTC GCCTCTAATC ACGCCAAACC CTCGTCCAGT GTAGGTGGTA AGAGACGTCG GGGACTGAGG 000480
000481 CCTCTTCCCT TACCAGGGAC CTAAAACCTT TTCTCCGGTT GGGCTAGTTC GCTCTCGGGG AAGAACTACA CCTCCTACAT 000560
000561 CCACCCTCTA CCTCTCATTT TAAGTCCCTT GTGCCTGAGC ATTTCTCTCC ACGTGACTCT TAAGGTGAGA AGCCTCTTGC 000640
000641 CCATCCCTTT ACTCCGTAAT TAACGGGTGT TGTGACCAGA TGACCAGTCT GCCCCACTAC CAGGAAAATT GGGAGTTTGG 000720
000721 GATACTGTAG GCATAAGAGG ATACTGACAG AGACGTTCTG GATGTTTTCC TGACGCTGAG AACTCCTAAA CTTGCATCCT 000800
000801 GGCGTCTGCT AAGGTGTATC TCTGCCTCTC CCTCCCACGT CGTAGACCAG CCTCTGCTTG CTATAGGGGT TTCATTGCGT 000880
000881 CTGCAGCCCA AGGTTAGCCT CTGACCTGGA CAGTGGTCAC TGATTATTTA GGGTTAAGCC TATTTAGGGC TAATCCAGTA 000960
000961 GTAGCTGCCA TGCTTCAGGT TAGTATCCCA TTGGGTGTAG TTCATGGGGT AAGTGGTCGA AAGTAAAATG AATAACTTTG 001040
001041 TATGGGCCGT GAAGTTTGTT GTCAGGAACT AGACCTTCAT AACCCTTTAA GCAGGTTGCC ACTGGCCCAT ATGCTGCTTT 001120
001121 GTGTAAGACA AGGTTGTCCA ACTCgcggcc caacgcaaat ttgcaaattt aaaacatgaa tttttttgcg atttattatt 001200
001201 ttttttttag ctcatcatat atcattagtg ttagtgtatt atatgtgtga cccaagacag ttcttccagt gtggcccagg 001280
001281 gaagccaaaa aattgaacac cctggtgtaa gttataagca agcacctttt tctcaagaca ctatgtgttc agctgctgag 001360
001361 aaaccattac aagtaataag tataTTTAGA TTCCGCACCC CCCCCCCCCG CCGCCTTGTC TCCAGGCAGG TTTCTAACTC 001440
001441 ACCACCAAGC AAGGGGGACT GCATATCCTT TGTGTAGGAG GCTTCTAAAG ATCTTCTCTT CTCTTGAGAC TTTCTCCTTT 001520
001521 AAAAAAAAAG AAAGAAAATA CCTGCAAGTT CTCCAAGGGA TGTCTGGGAT CACTAAATAG TCTGAGGTGG TGTTTCCCTC 001600
001601 AGGCAAGGCT GTGCCCtagt taagagcatg gaggtacact gcctgcttgt gaagcctggt ggctctcacc gctgtagcac 001680
001681 tttaggaagg ttacttaatg cccctggctc tttatctgta aaatgaagtt aaggaataaa tgagaatgct taaacacagc 001760
001761 ccaggaccta acacagagta aaagctcaag aaTACCCAGA GGGGGTCAGC CTTAGTGGGC TGTAACTTGT ATAGGATTTG 001840
001841 GGGGTGGGAA TACAGAGCAG ACATTGCTAA TTCATGCTTT GCCTGATCTC AAGAAATAAG AACTCTACCC TAGGCTTACT 001920
001921 ACCTACGGAG TAAGAACTAC TTGGCCCTCT GGGACTGATC TTCAAGCACT GGTCATTGTG GGACCAATAA GGGGCCGGTG 002000
002001 TTCAGTAGAA AATACTGGCT TTGGATTAGC ATTTTGCTTC TTCCCAAGAT CATATGGCCA GCAAGGTGGC CAAATGAGTA 002080
002081 TCTTCTCTGA ATTTGCTTTA TTTGTAAGAT GGGTCTGCTG CCCACTGAGG GTTAAGTGAA GCCCTGTGCA GGAAAGCTCT 002160
002161 GAGGCCCTCT GAGCTGTAGT GGGAGCTCAG TAGGAGCCTG GGTGCCAGCA ACCACAGTCC TGGGTGTGCT TTGAGGGGGT 002240
002241 CTGCAGGTTG CTGCCCAGGG TGGACGTGGC TGCAGTGACA CTTTCTCCTG CAGGTGAGCA TGGGTTTATG CGTCTTAGGC 002320
002321 ATTATTGTGA TGGCGAGCAC CAATTCTCTG ATGTGGACCT TCTTTAGCCG GGGCCTCAGT TTCTCCATGT CTTCAGCCAT 002400
002401 TGCATCTGTC ACAGTGACTT TTTCAAATAT CCTCAGCTCG GCCTTCCTGG GCTATGTGCT GTATGGAGAG TGCCAGGAGG 002480
002481 TCTTGTGGTG GGGAGGAGTG TTCCTTATTC TCTGCGGACT CACCCTAATC CACAGGAAGC TCCCACCCAC CTGGAAGCCC 002560
002561 CTTCCACACA AGCAGCAGTA GCACCACTTG GCTAGACGGA CCAGCTGGAA AGATCATGAT GGTGGCCCAG CCTTGGGATG 002640
002641 TCATGTGGGA CTGTATCCTA GGGCGATCCA GTTGTGCAGC CTTCTGACCA TCAGCCAAGG GAAGCAGGCC TCTGATGGAG 002720
002721 CAGGCTCTGG CTCTGTAAGG AGAGGTGCAG CTGCAGCAGT GTTCTACCGG AAGTGTTTTG ATCATCTGTA CAGTGCTTTG 002800
002801 GATTCTTCCT CCCAGGCCTA CCCCAGTGAG CCTTCGCAGA TGCTGGAGAT CCTGGGGTTG GTCTGCTTTG TGTATGGTAC 002880
002881 TTGAAACCAC GCTGTAATTA TTGTCCTGTT GCCAAACAAA AGCCAGTCAT GTAACTCTAG AAGCAGTGAC TGGTGGGGCT 002960
002961 TTCTGACAGT TCCATGCTGA TGTATCAGGC CATCTGTGTC ATGCTTATGT ATTATGGCAA GAAGAGGAAA ACTGGATTAA 003040
003041 TAAATACGTT TTTTGTAAGT TAAAACTACC A
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Predicted Small Protein

Name NONHSAT089378_smProtein_2453:2527
Length 25
Molecular weight 2556.8712
Aromaticity 0.0416666666667
Instability index 143.6375
Isoelectric point 4.40655517578
Runs 5
Runs residual 0.0267857142857
Runs probability 0.0471294824237
Amino acid sequence MCCMESARRSCGGEECSLFSADSP
Secondary structure LLLHHHHHHLLLLLLLLEELLLLL
PRMN -
PiMo -