Difference between revisions of "NONHSAT093388"

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sequence = <dnaseq>AGAGCTCACTCTCCAACTTTATTAAATACTATTTGAGCACAGGACACATTCTTAAACATTTTGAAAAACATTAACCCAAGATGTAGAGGCTACTGCTAGTCGTCATTCTAGAATCTGATATTTTACTCTGTATTTGAAATGAATGATTAATGTCCTAGGAAATTAGCTTTAGCAGATGTCCAGGTGCCACATCAAAAAAGTGCAATAATTATTGACAGTTTTTTAGATTAGGCATATTATTGGAAAACAACTTTATAAAGAGTGAACATTGTATACTCTAGTAAAACAGCATCACTTTAAAAATATTCATTTATGAAATCTGTTACCTATAGTTGAAGTCTTGAGTAGTGAACAAGGGACTCTAATACCAATACTCTTAATATCTGGCTATTTTAGATCCCTTAAAGGGCATAATTATTGGAAATTTAGGTATTTCACTAAAGCATGTATATAATATTGCCAACAAGAAAAGTAAATCTGAAGATTAAGGGAACTTACTTCTGCAAACTGTCTTGCGATAGTTAAGCAGAATTTAAACTCTGTTTTAAGCAGGAAACCAGAAAGATTATTTTGCAGTTGTAGAAGATTTCATAACTTATTAAAACTTATTAACATTTTGTGTTGTTTAGATATAGGCAGTTGATACATACTAACATCCCAGCCTTTTCAATATCAGGGTTAAATTATAGGAAAACTCAGTAAAATGGTACAAATCTGAAAGTTTGATGGTAGAAACTGAAGATTTAACAGAGAACTGTGTTTTACCCGAGTGCCAAAAATGCTGTGAGCCTCCTTGCACAAAATTTATACCACTTTTGCATTTTTATCTATCAGTCCAGATAGTTGTCTCCCCTCCTTCTCCCAGGACCTCTCCACCATTAAAATGCACAAACCACATGGCCGATTTCACCATTTACATTTATTTTCAAAAGTTACTACAACCAAATTAATTCTATTAGAAGAAATGTAGACAAATTCTATAAAGACTATAGATTGTGACCTAAGAAAGAAATGAGGCAAAGAACCAAACATTGAATTAAATGCTACATGGGTGACTAAGATCTGTTTCAAGTCAGTGATAATATAGCCACTTCTGGGTACTTCAGTATCAGAGATCAGTTCTCGTGGTTTAGACAGTTCCTATCTATAGCTGACTATCCTTGTCCTTGAATATGGTGTAACTGACTATTGGCTCTACAGTTTTATTGGGCCACTTAAGAAATATTTCCTTGAATAATTATTTTGAGAAAAAGTCTAAAAGTAATAAAAATAATTTTAAACACACTGTAGTAAGAAATGACTGTTGGAAAATTATGCTTTCACTTTCTACCATATTCTCAGCTATACAAAACCATTTATTTTGAAGATTTTTAGACTACTGTTAATTTGAAATCTGTTACTCTTATTGTGGAATTTGTTTTTTTAAAAAAGATGTTTCTAATTGGATTTTTAAAAGAAGAATGGAATTTGGTTGCTATTTTACAATAGAACCTAAGCTTTTTGTGGTTCTTAGTGTCCTATGTAAAACTTAGTGTCAAAGTAATCAACTTTGAGATTTTCCCTTCTATTCTGCTTTATATTAAAAGCCCATTAGAAAATGGGAACCTGGTGAATATATAATGAATTGTAAAATATTTTAATGTGTAACTTTTTCAACTGTGAAACTGACTTGATTTTTTGATGAAAACAGCTGCTGATAAAGTATTTTGTGT</dnaseq>|
 
sequence = <dnaseq>AGAGCTCACTCTCCAACTTTATTAAATACTATTTGAGCACAGGACACATTCTTAAACATTTTGAAAAACATTAACCCAAGATGTAGAGGCTACTGCTAGTCGTCATTCTAGAATCTGATATTTTACTCTGTATTTGAAATGAATGATTAATGTCCTAGGAAATTAGCTTTAGCAGATGTCCAGGTGCCACATCAAAAAAGTGCAATAATTATTGACAGTTTTTTAGATTAGGCATATTATTGGAAAACAACTTTATAAAGAGTGAACATTGTATACTCTAGTAAAACAGCATCACTTTAAAAATATTCATTTATGAAATCTGTTACCTATAGTTGAAGTCTTGAGTAGTGAACAAGGGACTCTAATACCAATACTCTTAATATCTGGCTATTTTAGATCCCTTAAAGGGCATAATTATTGGAAATTTAGGTATTTCACTAAAGCATGTATATAATATTGCCAACAAGAAAAGTAAATCTGAAGATTAAGGGAACTTACTTCTGCAAACTGTCTTGCGATAGTTAAGCAGAATTTAAACTCTGTTTTAAGCAGGAAACCAGAAAGATTATTTTGCAGTTGTAGAAGATTTCATAACTTATTAAAACTTATTAACATTTTGTGTTGTTTAGATATAGGCAGTTGATACATACTAACATCCCAGCCTTTTCAATATCAGGGTTAAATTATAGGAAAACTCAGTAAAATGGTACAAATCTGAAAGTTTGATGGTAGAAACTGAAGATTTAACAGAGAACTGTGTTTTACCCGAGTGCCAAAAATGCTGTGAGCCTCCTTGCACAAAATTTATACCACTTTTGCATTTTTATCTATCAGTCCAGATAGTTGTCTCCCCTCCTTCTCCCAGGACCTCTCCACCATTAAAATGCACAAACCACATGGCCGATTTCACCATTTACATTTATTTTCAAAAGTTACTACAACCAAATTAATTCTATTAGAAGAAATGTAGACAAATTCTATAAAGACTATAGATTGTGACCTAAGAAAGAAATGAGGCAAAGAACCAAACATTGAATTAAATGCTACATGGGTGACTAAGATCTGTTTCAAGTCAGTGATAATATAGCCACTTCTGGGTACTTCAGTATCAGAGATCAGTTCTCGTGGTTTAGACAGTTCCTATCTATAGCTGACTATCCTTGTCCTTGAATATGGTGTAACTGACTATTGGCTCTACAGTTTTATTGGGCCACTTAAGAAATATTTCCTTGAATAATTATTTTGAGAAAAAGTCTAAAAGTAATAAAAATAATTTTAAACACACTGTAGTAAGAAATGACTGTTGGAAAATTATGCTTTCACTTTCTACCATATTCTCAGCTATACAAAACCATTTATTTTGAAGATTTTTAGACTACTGTTAATTTGAAATCTGTTACTCTTATTGTGGAATTTGTTTTTTTAAAAAAGATGTTTCTAATTGGATTTTTAAAAGAAGAATGGAATTTGGTTGCTATTTTACAATAGAACCTAAGCTTTTTGTGGTTCTTAGTGTCCTATGTAAAACTTAGTGTCAAAGTAATCAACTTTGAGATTTTCCCTTCTATTCTGCTTTATATTAAAAGCCCATTAGAAAATGGGAACCTGGTGAATATATAATGAATTGTAAAATATTTTAATGTGTAACTTTTTCAACTGTGAAACTGACTTGATTTTTTGATGAAAACAGCTGCTGATAAAGTATTTTGTGT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG036742]][[Category:Transcripts]]

Latest revision as of 00:47, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT093388

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1712 nt

Genomic location

chr3+:178953578..178955289

Exon number

1

Exons

178953578..178955289

Genome context

Sequence
000001 AGAGCTCACT CTCCAACTTT ATTAAATACT ATTTGAGCAC AGGACACATT CTTAAACATT TTGAAAAACA TTAACCCAAG 000080
000081 ATGTAGAGGC TACTGCTAGT CGTCATTCTA GAATCTGATA TTTTACTCTG TATTTGAAAT GAATGATTAA TGTCCTAGGA 000160
000161 AATTAGCTTT AGCAGATGTC CAGGTGCCAC ATCAAAAAAG TGCAATAATT ATTGACAGTT TTTTAGATTA GGCATATTAT 000240
000241 TGGAAAACAA CTTTATAAAG AGTGAACATT GTATACTCTA GTAAAACAGC ATCACTTTAA AAATATTCAT TTATGAAATC 000320
000321 TGTTACCTAT AGTTGAAGTC TTGAGTAGTG AACAAGGGAC TCTAATACCA ATACTCTTAA TATCTGGCTA TTTTAGATCC 000400
000401 CTTAAAGGGC ATAATTATTG GAAATTTAGG TATTTCACTA AAGCATGTAT ATAATATTGC CAACAAGAAA AGTAAATCTG 000480
000481 AAGATTAAGG GAACTTACTT CTGCAAACTG TCTTGCGATA GTTAAGCAGA ATTTAAACTC TGTTTTAAGC AGGAAACCAG 000560
000561 AAAGATTATT TTGCAGTTGT AGAAGATTTC ATAACTTATT AAAACTTATT AACATTTTGT GTTGTTTAGA TATAGGCAGT 000640
000641 TGATACATAC TAACATCCCA GCCTTTTCAA TATCAGGGTT AAATTATAGG AAAACTCAGT AAAATGGTAC AAATCTGAAA 000720
000721 GTTTGATGGT AGAAACTGAA GATTTAACAG AGAACTGTGT TTTACCCGAG TGCCAAAAAT GCTGTGAGCC TCCTTGCACA 000800
000801 AAATTTATAC CACTTTTGCA TTTTTATCTA TCAGTCCAGA TAGTTGTCTC CCCTCCTTCT CCCAGGACCT CTCCACCATT 000880
000881 AAAATGCACA AACCACATGG CCGATTTCAC CATTTACATT TATTTTCAAA AGTTACTACA ACCAAATTAA TTCTATTAGA 000960
000961 AGAAATGTAG ACAAATTCTA TAAAGACTAT AGATTGTGAC CTAAGAAAGA AATGAGGCAA AGAACCAAAC ATTGAATTAA 001040
001041 ATGCTACATG GGTGACTAAG ATCTGTTTCA AGTCAGTGAT AATATAGCCA CTTCTGGGTA CTTCAGTATC AGAGATCAGT 001120
001121 TCTCGTGGTT TAGACAGTTC CTATCTATAG CTGACTATCC TTGTCCTTGA ATATGGTGTA ACTGACTATT GGCTCTACAG 001200
001201 TTTTATTGGG CCACTTAAGA AATATTTCCT TGAATAATTA TTTTGAGAAA AAGTCTAAAA GTAATAAAAA TAATTTTAAA 001280
001281 CACACTGTAG TAAGAAATGA CTGTTGGAAA ATTATGCTTT CACTTTCTAC CATATTCTCA GCTATACAAA ACCATTTATT 001360
001361 TTGAAGATTT TTAGACTACT GTTAATTTGA AATCTGTTAC TCTTATTGTG GAATTTGTTT TTTTAAAAAA GATGTTTCTA 001440
001441 ATTGGATTTT TAAAAGAAGA ATGGAATTTG GTTGCTATTT TACAATAGAA CCTAAGCTTT TTGTGGTTCT TAGTGTCCTA 001520
001521 TGTAAAACTT AGTGTCAAAG TAATCAACTT TGAGATTTTC CCTTCTATTC TGCTTTATAT TAAAAGCCCA TTAGAAAATG 001600
001601 GGAACCTGGT GAATATATAA TGAATTGTAA AATATTTTAA TGTGTAACTT TTTCAACTGT GAAACTGACT TGATTTTTTG 001680
001681 ATGAAAACAG CTGCTGATAA AGTATTTTGT GT
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Predicted Small Protein

Name NONHSAT093388_smProtein_725:949
Length 75
Molecular weight 8501.9111
Aromaticity 0.0945945945946
Instability index 67.3866216216
Isoelectric point 5.47906494141
Runs 8
Runs residual 0.0345418589321
Runs probability 0.0422297297297
Amino acid sequence MVETEDLTENCVLPECQKCCEPPCTKFIPLLHFYLSVQIVVSPPSPRTSPPLKCTNHMAD
FTIYIYFQKLLQPN
Secondary structure LLLLLLLLLLLLLLHHHHLLLLLLLLEEEEEEEEEEEEEEELLLLLLLLLLLLLLLLLLL
EEEEHHHHHHHLLL
PRMN -
PiMo -