Difference between revisions of "NONHSAT093388"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>AGAGCTCACTCTCCAACTTTATTAAATACTATTTGAGCACAGGACACATTCTTAAACATTTTGAAAAACATTAACCCAAGATGTAGAGGCTACTGCTAGTCGTCATTCTAGAATCTGATATTTTACTCTGTATTTGAAATGAATGATTAATGTCCTAGGAAATTAGCTTTAGCAGATGTCCAGGTGCCACATCAAAAAAGTGCAATAATTATTGACAGTTTTTTAGATTAGGCATATTATTGGAAAACAACTTTATAAAGAGTGAACATTGTATACTCTAGTAAAACAGCATCACTTTAAAAATATTCATTTATGAAATCTGTTACCTATAGTTGAAGTCTTGAGTAGTGAACAAGGGACTCTAATACCAATACTCTTAATATCTGGCTATTTTAGATCCCTTAAAGGGCATAATTATTGGAAATTTAGGTATTTCACTAAAGCATGTATATAATATTGCCAACAAGAAAAGTAAATCTGAAGATTAAGGGAACTTACTTCTGCAAACTGTCTTGCGATAGTTAAGCAGAATTTAAACTCTGTTTTAAGCAGGAAACCAGAAAGATTATTTTGCAGTTGTAGAAGATTTCATAACTTATTAAAACTTATTAACATTTTGTGTTGTTTAGATATAGGCAGTTGATACATACTAACATCCCAGCCTTTTCAATATCAGGGTTAAATTATAGGAAAACTCAGTAAAATGGTACAAATCTGAAAGTTTGATGGTAGAAACTGAAGATTTAACAGAGAACTGTGTTTTACCCGAGTGCCAAAAATGCTGTGAGCCTCCTTGCACAAAATTTATACCACTTTTGCATTTTTATCTATCAGTCCAGATAGTTGTCTCCCCTCCTTCTCCCAGGACCTCTCCACCATTAAAATGCACAAACCACATGGCCGATTTCACCATTTACATTTATTTTCAAAAGTTACTACAACCAAATTAATTCTATTAGAAGAAATGTAGACAAATTCTATAAAGACTATAGATTGTGACCTAAGAAAGAAATGAGGCAAAGAACCAAACATTGAATTAAATGCTACATGGGTGACTAAGATCTGTTTCAAGTCAGTGATAATATAGCCACTTCTGGGTACTTCAGTATCAGAGATCAGTTCTCGTGGTTTAGACAGTTCCTATCTATAGCTGACTATCCTTGTCCTTGAATATGGTGTAACTGACTATTGGCTCTACAGTTTTATTGGGCCACTTAAGAAATATTTCCTTGAATAATTATTTTGAGAAAAAGTCTAAAAGTAATAAAAATAATTTTAAACACACTGTAGTAAGAAATGACTGTTGGAAAATTATGCTTTCACTTTCTACCATATTCTCAGCTATACAAAACCATTTATTTTGAAGATTTTTAGACTACTGTTAATTTGAAATCTGTTACTCTTATTGTGGAATTTGTTTTTTTAAAAAAGATGTTTCTAATTGGATTTTTAAAAGAAGAATGGAATTTGGTTGCTATTTTACAATAGAACCTAAGCTTTTTGTGGTTCTTAGTGTCCTATGTAAAACTTAGTGTCAAAGTAATCAACTTTGAGATTTTCCCTTCTATTCTGCTTTATATTAAAAGCCCATTAGAAAATGGGAACCTGGTGAATATATAATGAATTGTAAAATATTTTAATGTGTAACTTTTTCAACTGTGAAACTGACTTGATTTTTTGATGAAAACAGCTGCTGATAAAGTATTTTGTGT</dnaseq>| | sequence = <dnaseq>AGAGCTCACTCTCCAACTTTATTAAATACTATTTGAGCACAGGACACATTCTTAAACATTTTGAAAAACATTAACCCAAGATGTAGAGGCTACTGCTAGTCGTCATTCTAGAATCTGATATTTTACTCTGTATTTGAAATGAATGATTAATGTCCTAGGAAATTAGCTTTAGCAGATGTCCAGGTGCCACATCAAAAAAGTGCAATAATTATTGACAGTTTTTTAGATTAGGCATATTATTGGAAAACAACTTTATAAAGAGTGAACATTGTATACTCTAGTAAAACAGCATCACTTTAAAAATATTCATTTATGAAATCTGTTACCTATAGTTGAAGTCTTGAGTAGTGAACAAGGGACTCTAATACCAATACTCTTAATATCTGGCTATTTTAGATCCCTTAAAGGGCATAATTATTGGAAATTTAGGTATTTCACTAAAGCATGTATATAATATTGCCAACAAGAAAAGTAAATCTGAAGATTAAGGGAACTTACTTCTGCAAACTGTCTTGCGATAGTTAAGCAGAATTTAAACTCTGTTTTAAGCAGGAAACCAGAAAGATTATTTTGCAGTTGTAGAAGATTTCATAACTTATTAAAACTTATTAACATTTTGTGTTGTTTAGATATAGGCAGTTGATACATACTAACATCCCAGCCTTTTCAATATCAGGGTTAAATTATAGGAAAACTCAGTAAAATGGTACAAATCTGAAAGTTTGATGGTAGAAACTGAAGATTTAACAGAGAACTGTGTTTTACCCGAGTGCCAAAAATGCTGTGAGCCTCCTTGCACAAAATTTATACCACTTTTGCATTTTTATCTATCAGTCCAGATAGTTGTCTCCCCTCCTTCTCCCAGGACCTCTCCACCATTAAAATGCACAAACCACATGGCCGATTTCACCATTTACATTTATTTTCAAAAGTTACTACAACCAAATTAATTCTATTAGAAGAAATGTAGACAAATTCTATAAAGACTATAGATTGTGACCTAAGAAAGAAATGAGGCAAAGAACCAAACATTGAATTAAATGCTACATGGGTGACTAAGATCTGTTTCAAGTCAGTGATAATATAGCCACTTCTGGGTACTTCAGTATCAGAGATCAGTTCTCGTGGTTTAGACAGTTCCTATCTATAGCTGACTATCCTTGTCCTTGAATATGGTGTAACTGACTATTGGCTCTACAGTTTTATTGGGCCACTTAAGAAATATTTCCTTGAATAATTATTTTGAGAAAAAGTCTAAAAGTAATAAAAATAATTTTAAACACACTGTAGTAAGAAATGACTGTTGGAAAATTATGCTTTCACTTTCTACCATATTCTCAGCTATACAAAACCATTTATTTTGAAGATTTTTAGACTACTGTTAATTTGAAATCTGTTACTCTTATTGTGGAATTTGTTTTTTTAAAAAAGATGTTTCTAATTGGATTTTTAAAAGAAGAATGGAATTTGGTTGCTATTTTACAATAGAACCTAAGCTTTTTGTGGTTCTTAGTGTCCTATGTAAAACTTAGTGTCAAAGTAATCAACTTTGAGATTTTCCCTTCTATTCTGCTTTATATTAAAAGCCCATTAGAAAATGGGAACCTGGTGAATATATAATGAATTGTAAAATATTTTAATGTGTAACTTTTTCAACTGTGAAACTGACTTGATTTTTTGATGAAAACAGCTGCTGATAAAGTATTTTGTGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG036742]][[Category:Transcripts]] |
Latest revision as of 00:47, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT093388 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1712 nt |
Genomic location |
chr3+:178953578..178955289 |
Exon number |
1 |
Exons |
178953578..178955289 |
Genome context |
|
Sequence |
000001 AGAGCTCACT CTCCAACTTT ATTAAATACT ATTTGAGCAC AGGACACATT CTTAAACATT TTGAAAAACA TTAACCCAAG 000080
000081 ATGTAGAGGC TACTGCTAGT CGTCATTCTA GAATCTGATA TTTTACTCTG TATTTGAAAT GAATGATTAA TGTCCTAGGA 000160 000161 AATTAGCTTT AGCAGATGTC CAGGTGCCAC ATCAAAAAAG TGCAATAATT ATTGACAGTT TTTTAGATTA GGCATATTAT 000240 000241 TGGAAAACAA CTTTATAAAG AGTGAACATT GTATACTCTA GTAAAACAGC ATCACTTTAA AAATATTCAT TTATGAAATC 000320 000321 TGTTACCTAT AGTTGAAGTC TTGAGTAGTG AACAAGGGAC TCTAATACCA ATACTCTTAA TATCTGGCTA TTTTAGATCC 000400 000401 CTTAAAGGGC ATAATTATTG GAAATTTAGG TATTTCACTA AAGCATGTAT ATAATATTGC CAACAAGAAA AGTAAATCTG 000480 000481 AAGATTAAGG GAACTTACTT CTGCAAACTG TCTTGCGATA GTTAAGCAGA ATTTAAACTC TGTTTTAAGC AGGAAACCAG 000560 000561 AAAGATTATT TTGCAGTTGT AGAAGATTTC ATAACTTATT AAAACTTATT AACATTTTGT GTTGTTTAGA TATAGGCAGT 000640 000641 TGATACATAC TAACATCCCA GCCTTTTCAA TATCAGGGTT AAATTATAGG AAAACTCAGT AAAATGGTAC AAATCTGAAA 000720 000721 GTTTGATGGT AGAAACTGAA GATTTAACAG AGAACTGTGT TTTACCCGAG TGCCAAAAAT GCTGTGAGCC TCCTTGCACA 000800 000801 AAATTTATAC CACTTTTGCA TTTTTATCTA TCAGTCCAGA TAGTTGTCTC CCCTCCTTCT CCCAGGACCT CTCCACCATT 000880 000881 AAAATGCACA AACCACATGG CCGATTTCAC CATTTACATT TATTTTCAAA AGTTACTACA ACCAAATTAA TTCTATTAGA 000960 000961 AGAAATGTAG ACAAATTCTA TAAAGACTAT AGATTGTGAC CTAAGAAAGA AATGAGGCAA AGAACCAAAC ATTGAATTAA 001040 001041 ATGCTACATG GGTGACTAAG ATCTGTTTCA AGTCAGTGAT AATATAGCCA CTTCTGGGTA CTTCAGTATC AGAGATCAGT 001120 001121 TCTCGTGGTT TAGACAGTTC CTATCTATAG CTGACTATCC TTGTCCTTGA ATATGGTGTA ACTGACTATT GGCTCTACAG 001200 001201 TTTTATTGGG CCACTTAAGA AATATTTCCT TGAATAATTA TTTTGAGAAA AAGTCTAAAA GTAATAAAAA TAATTTTAAA 001280 001281 CACACTGTAG TAAGAAATGA CTGTTGGAAA ATTATGCTTT CACTTTCTAC CATATTCTCA GCTATACAAA ACCATTTATT 001360 001361 TTGAAGATTT TTAGACTACT GTTAATTTGA AATCTGTTAC TCTTATTGTG GAATTTGTTT TTTTAAAAAA GATGTTTCTA 001440 001441 ATTGGATTTT TAAAAGAAGA ATGGAATTTG GTTGCTATTT TACAATAGAA CCTAAGCTTT TTGTGGTTCT TAGTGTCCTA 001520 001521 TGTAAAACTT AGTGTCAAAG TAATCAACTT TGAGATTTTC CCTTCTATTC TGCTTTATAT TAAAAGCCCA TTAGAAAATG 001600 001601 GGAACCTGGT GAATATATAA TGAATTGTAA AATATTTTAA TGTGTAACTT TTTCAACTGT GAAACTGACT TGATTTTTTG 001680 001681 ATGAAAACAG CTGCTGATAA AGTATTTTGT GT |
Predicted Small Protein
Name | NONHSAT093388_smProtein_725:949 |
Length | 75 |
Molecular weight | 8501.9111 |
Aromaticity | 0.0945945945946 |
Instability index | 67.3866216216 |
Isoelectric point | 5.47906494141 |
Runs | 8 |
Runs residual | 0.0345418589321 |
Runs probability | 0.0422297297297 |
Amino acid sequence | MVETEDLTENCVLPECQKCCEPPCTKFIPLLHFYLSVQIVVSPPSPRTSPPLKCTNHMAD FTIYIYFQKLLQPN |
Secondary structure | LLLLLLLLLLLLLLHHHHLLLLLLLLEEEEEEEEEEEEEEELLLLLLLLLLLLLLLLLLL EEEEHHHHHHHLLL |
PRMN | - |
PiMo | - |