Difference between revisions of "NONHSAT094467"
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==Annotated Information==
===Transcriptomic Nomeclature===
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[[Category:Intronic(AS)]] | [[Category:Intronic(AS)]] | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG037178]][[Category:Transcripts]] |
Latest revision as of 00:51, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT094467 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS),sense |
| Length |
687 nt |
| Genomic location |
chr3+:197680434..197682722 |
| Exon number |
2 |
| Exons |
197680434..197681018,197682621..197682722 |
| Genome context |
|
| Sequence |
000001 agtcatcccg tgatcacttc atggcatttc ccctcccttt ccagtctttg ttccatggtc acctcagtga gaccttcctt 000080
000081 ggctatttaa aatggcaggt aattcctcct ttctgtacac acaaatatcc tcacacttgt ccttttttgc tattttttca 000160 000161 atattgcctc tgttatcatc tgacctatgt attttcctta aacttacttg gttatcatgt gaaagatttt tgttttatag 000240 000241 ctgctgtatt ttacagaagg gcctggcata caatagttac tcgataagta tctgttgaat gaatgGTGTT CTAGGCAttt 000320 000321 aaagtttctc aggtgatgaa gtgggtaacc agggttgaga gccactCGTG TAGAGGTCAC CTTGAATTTG TATCCAACTA 000400 000401 TATCAGCTTG TATTCCTCTT CTTTCCCTTT TTAAAATCAG CAACACAGTC ACTCCTGGCG GCAAACCAAA CAAAACCAGA 000480 000481 GTCATCTGGG GAAAAGTAAC TCGGGCCCAT GGAAACAGTG GCATGGTTCG TGCCAAATTC CGAAGCAATC TTCCTGCTAA 000560 000561 GGCCATTGGA CACAGAATCC GAGTGATGCT GTACCCCTCA AGGATTTAAA CTAACGAAAA ATCAATAAAT AAATGTGGAT 000640 000641 TTGTGCTCTT GTATTTTTAA GTGGATTAAA AAACTTACTA CCTTAAA |
Predicted Small Protein
| Name | NONHSAT094467_smProtein_20:286 |
| Length | 89 |
| Molecular weight | 10600.4153 |
| Aromaticity | 0.238636363636 |
| Instability index | 48.02625 |
| Isoelectric point | 8.91534423828 |
| Runs | 10 |
| Runs residual | 0.0177272727273 |
| Runs probability | 0.0296149090266 |
| Amino acid sequence | MAFPLPFQSLFHGHLSETFLGYLKWQVIPPFCTHKYPHTCPFLLFFQYCLCYHLTYVFSL NLLGYHVKDFCFIAAVFYRRAWHTIVTR |
| Secondary structure | LLLLLLLHHHHLLLHHHHHHHHHHHHEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHH HHHHHLHHHHHHHHHHHHHHHHHHHLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHH HHHHLLLLHHHHHHHHHHHHHHHHHHLL |
| PiMo | oooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTT TTTTiiiiTTTTTTTTTTTTTTTTTToo |
