Difference between revisions of "NONHSAT094546"

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sequence = <dnaseq>ACTGCCCAATCAGGCGCGCAGTCTGAGAGGAGGGGGCGGCATCCGGGATCTTCGGCGGCCTTGGCCTGTTGCTTCAGCCTGAGCTCGGTTAGGGCCTCACTTCCCTGCTTCCACACCTCAGGGAGGCCTCGGTGATTTTGCCAGAGCCTCAGCCTCCATCGCTCTGTAACCTGCGGGTATTGGATGATTCGTAGCTAAGACTTCGCGACACCCTTGAAGCTGAGAAATGGAACCCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGTCTCCCTAGGTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTGAAGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTACTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAGTTGCTTTTCAACAACAAAGAAGAAAGCAGCCATCAGAAATGTTTCGTTTTGTGTTAAAAAGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGCAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAGTGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAACAGAGCATCAGTAAGGCAACAGCGTGACAACAGCCTCAAGTTCTTGGGTACTGCCCTCAGGAGAACTCACTGTGTCCCAAACTTACAATGAAAGAGCATTTGGAGTTGTATGCAGCCGTGAAAGGACTGGGCAAAGATGCTGCTCTTAGTATTTCATGATTGGTGGAAGCTCTCAAGCTCCAGGAGCAACTTAAGGCTCCCGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTATGCTTCGTGCTGAGCATACTGGGGAACCCATCAGTGGTGCTTCTAGACGAGCTGTTCACCGGGATGGACCCTGAGGGGCAGCAGCAAATGTGGCAGATACTTCAGGCTACCATTAAAAACCAGGAGAGGGGCGCCCTCTTGACCACCCATTACATGTCAGAGGCTAAGTCTCTGTGTGACCGTGTGGCCATCATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACAGCTGAAAAGTTTGGTAAAGATTATTTACTAGAAATAAAAATGAAAGAACCTACTCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCATGTAAGTTACCTGTGGAGGATGTCCACCCTCTGTCTCAGGCCTTTTTCAAATTAAAGGCAGTGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTGTTCTTAGAACTCTGTAAAGAGCAGGCGCTGGGAAATGTTGATGATAAAATTGATATAACAGTTCGATGGAAACTTCTCCCACGGGAAGATTCTTAAAACGAAGAACCTCCTAACATTCAATTTTAAGTCCTACTGCATTATTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAATATTCAATAGTTTAAACATGCAACAATGATTAAAGTTTTCATTTTTAAAAATTTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGCAGACAAAATTAACAAACTCAGACATGTTATTCATCCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTTAAAATCATAAAATATTAGGTTTGTTTTTGGTTATTATCAATAAAGTTAACACTGAGCACATTTT</dnaseq>|
 
sequence = <dnaseq>ACTGCCCAATCAGGCGCGCAGTCTGAGAGGAGGGGGCGGCATCCGGGATCTTCGGCGGCCTTGGCCTGTTGCTTCAGCCTGAGCTCGGTTAGGGCCTCACTTCCCTGCTTCCACACCTCAGGGAGGCCTCGGTGATTTTGCCAGAGCCTCAGCCTCCATCGCTCTGTAACCTGCGGGTATTGGATGATTCGTAGCTAAGACTTCGCGACACCCTTGAAGCTGAGAAATGGAACCCTTAACATTCAGGGATGTGGCCATAGAATTCTCTCCAGAAGAGTGGAAATGCCTGGACCCTGCCCAGCAGAATTTGTATAGAGATGTGATGTTGGAGAACTACAGAAACCTGGTCTCCCTAGGTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTGAAGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTACTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAGTTGCTTTTCAACAACAAAGAAGAAAGCAGCCATCAGAAATGTTTCGTTTTGTGTTAAAAAGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGCAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAGTGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAACAGAGCATCAGTAAGGCAACAGCGTGACAACAGCCTCAAGTTCTTGGGTACTGCCCTCAGGAGAACTCACTGTGTCCCAAACTTACAATGAAAGAGCATTTGGAGTTGTATGCAGCCGTGAAAGGACTGGGCAAAGATGCTGCTCTTAGTATTTCATGATTGGTGGAAGCTCTCAAGCTCCAGGAGCAACTTAAGGCTCCCGTGAAAACTCTATCAGAGGGAATAAAGAGAAAGCTATGCTTCGTGCTGAGCATACTGGGGAACCCATCAGTGGTGCTTCTAGACGAGCTGTTCACCGGGATGGACCCTGAGGGGCAGCAGCAAATGTGGCAGATACTTCAGGCTACCATTAAAAACCAGGAGAGGGGCGCCCTCTTGACCACCCATTACATGTCAGAGGCTAAGTCTCTGTGTGACCGTGTGGCCATCATGGTGTCAGGAACGCTAAGGTGTATTGGTTCCATTCAACAGCTGAAAAGTTTGGTAAAGATTATTTACTAGAAATAAAAATGAAAGAACCTACTCAGGTGGAAGCTCTCCACACAGAGATTTTGAAGCTTTTCCCACAGGCTGCTTGGCAGGAAAGATATTCCTCTTTAATGGCATGTAAGTTACCTGTGGAGGATGTCCACCCTCTGTCTCAGGCCTTTTTCAAATTAAAGGCAGTGAAACAGACCTTCAACCTGGAGGAATACAGCCTCTCTCAGGCTACCTTGGAGCAGGTGTTCTTAGAACTCTGTAAAGAGCAGGCGCTGGGAAATGTTGATGATAAAATTGATATAACAGTTCGATGGAAACTTCTCCCACGGGAAGATTCTTAAAACGAAGAACCTCCTAACATTCAATTTTAAGTCCTACTGCATTATTAGTTTCCATAATTCTACAAGAATGTTTCCTTTTACTTCAGTTAACAAAAGAAAATATTCAATAGTTTAAACATGCAACAATGATTAAAGTTTTCATTTTTAAAAATTTTAGGATGAAGGAAACAAGGAAATATAGGGAAAAGTAGCAGACAAAATTAACAAACTCAGACATGTTATTCATCCCCAACATGGGTCTATTTTGTGCTTAAAAATAATTTTAAAATCATAAAATATTAGGTTTGTTTTTGGTTATTATCAATAAAGTTAACACTGAGCACATTTT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG037205]][[Category:Transcripts]]

Latest revision as of 00:51, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT094546

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1895 nt

Genomic location

chr4-:419224..467998

Exon number

3

Exons

419224..420762,466364..466490,467770..467998

Genome context

Sequence
000001 ACTGCCCAAT CAGGCGCGCA GTCTGAGAGG AGGGGGCGGC ATCCGGGATC TTCGGCGGCC TTGGCCTGTT GCTTCAGCCT 000080
000081 GAGCTCGGTT AGGGCCTCAC TTCCCTGCTT CCACACCTCA GGGAGGCCTC GGTGATTTTG CCAGAGCCTC AGCCTCCATC 000160
000161 GCTCTGTAAC CTGCGGGTAT TGGATGATTC GTAGCTAAGA CTTCGCGACA CCCTTGAAGC TGAGAAATGG AACCCTTAAC 000240
000241 ATTCAGGGAT GTGGCCATAG AATTCTCTCC AGAAGAGTGG AAATGCCTGG ACCCTGCCCA GCAGAATTTG TATAGAGATG 000320
000321 TGATGTTGGA GAACTACAGA AACCTGGTCT CCCTAGGTGT CTGGAAATGA AGTATGGAAA TGAAATCATG AATAAAGACC 000400
000401 CAGTTTTCAG AATCTCTCCA CGAAGTAGAG GAACTCATAC CAATCCAGAA GAGCCTGAAG AAGATGTTCA AGCTGAAAGA 000480
000481 GTCCAAGCAG CAAATGCACT CACTACTCCA AACTTGGAGG AGGAACCAGT CATAACTGCA AGCTGTTTAC ACAAGGAATA 000560
000561 TTATGAGACA AAGAAAGTTG CTTTTCAACA ACAAAGAAGA AAGCAGCCAT CAGAAATGTT TCGTTTTGTG TTAAAAAGTG 000640
000641 AAGTTTTGGG ATTACTAGGA CACAATGGAG CTGGCAAAAG TACTTCCATT AAAATGATAA CTGGGTGCAC AGTGCCAACT 000720
000721 GCAGGAGTGG TGGTGTTACA AGGCAACAGA GCATCAGTAA GGCAACAGCG TGACAACAGC CTCAAGTTCT TGGGTACTGC 000800
000801 CCTCAGGAGA ACTCACTGTG TCCCAAACTT ACAATGAAAG AGCATTTGGA GTTGTATGCA GCCGTGAAAG GACTGGGCAA 000880
000881 AGATGCTGCT CTTAGTATTT CATGATTGGT GGAAGCTCTC AAGCTCCAGG AGCAACTTAA GGCTCCCGTG AAAACTCTAT 000960
000961 CAGAGGGAAT AAAGAGAAAG CTATGCTTCG TGCTGAGCAT ACTGGGGAAC CCATCAGTGG TGCTTCTAGA CGAGCTGTTC 001040
001041 ACCGGGATGG ACCCTGAGGG GCAGCAGCAA ATGTGGCAGA TACTTCAGGC TACCATTAAA AACCAGGAGA GGGGCGCCCT 001120
001121 CTTGACCACC CATTACATGT CAGAGGCTAA GTCTCTGTGT GACCGTGTGG CCATCATGGT GTCAGGAACG CTAAGGTGTA 001200
001201 TTGGTTCCAT TCAACAGCTG AAAAGTTTGG TAAAGATTAT TTACTAGAAA TAAAAATGAA AGAACCTACT CAGGTGGAAG 001280
001281 CTCTCCACAC AGAGATTTTG AAGCTTTTCC CACAGGCTGC TTGGCAGGAA AGATATTCCT CTTTAATGGC ATGTAAGTTA 001360
001361 CCTGTGGAGG ATGTCCACCC TCTGTCTCAG GCCTTTTTCA AATTAAAGGC AGTGAAACAG ACCTTCAACC TGGAGGAATA 001440
001441 CAGCCTCTCT CAGGCTACCT TGGAGCAGGT GTTCTTAGAA CTCTGTAAAG AGCAGGCGCT GGGAAATGTT GATGATAAAA 001520
001521 TTGATATAAC AGTTCGATGG AAACTTCTCC CACGGGAAGA TTCTTAAAAC GAAGAACCTC CTAACATTCA ATTTTAAGTC 001600
001601 CTACTGCATT ATTAGTTTCC ATAATTCTAC AAGAATGTTT CCTTTTACTT CAGTTAACAA AAGAAAATAT TCAATAGTTT 001680
001681 AAACATGCAA CAATGATTAA AGTTTTCATT TTTAAAAATT TTAGGATGAA GGAAACAAGG AAATATAGGG AAAAGTAGCA 001760
001761 GACAAAATTA ACAAACTCAG ACATGTTATT CATCCCCAAC ATGGGTCTAT TTTGTGCTTA AAAATAATTT TAAAATCATA 001840
001841 AAATATTAGG TTTGTTTTTG GTTATTATCA ATAAAGTTAA CACTGAGCAC ATTTT
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Predicted Small Protein

Name NONHSAT094546_smProtein_1046:1246
Length 67
Molecular weight 7467.7135
Aromaticity 0.0454545454545
Instability index 50.3
Isoelectric point 8.73797607422
Runs 11
Runs residual 0.0160587915079
Runs probability 0.0387660387661
Amino acid sequence MDPEGQQQMWQILQATIKNQERGALLTTHYMSEAKSLCDRVAIMVSGTLRCIGSIQQLKS
LVKIIY
Secondary structure LLHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHLLLEEEEELLLHHHHLHHHHHHH
HHHHHL
PRMN -
PiMo -