Difference between revisions of "NONHSAT095569"

Latest revision as of 00:54, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID	NONHSAT095569
Source	NONCODE4.0
Same with	,
Classification	intergenic
Length	1909 nt
Genomic location	chr4-:13187223..13339269
Exon number	10
Exons	13187223..13187359,13192904..13193109,13223015..13223058,13239166..13239506,13246440..13246459,13251292..13251519,13297496..13298140,13338311..13338332,13338764..13338784,13339024..13339269
Genome context
Sequence	000001 ATGTTCAGGG GAAATCCTCA GAGTCAACCA CACCACGGAT AAAGTTGAGA CACTCTGGTA TCAACTCAAC ACAGCTGTCC 000080 000081 CTGATGAACA CACGATGGAC ATAGAGTTTG ATGTTGTTCT TTTTCTTCTT GTTCTCAAAA AGATGAAAGG GAGCCTAAGG 000160 000161 AGGAATGAAT AGCAATGCCC TGAATTCCAA CTGACCTTCT ACAGAAAAGT ACCTGACTGC CAAGTGGTCT TTCCAGTCAT 000240 000241 TGGTGACCAT CACTAATTTC TTTCTCTATG ATGTCAATTT TCAGCTCTTC AGCTACTCAG TAGGCCGAGG TTGGGAGGAT 000320 000321 CTCTTAAGCC CAGGAGGTTG AGGCTGCAGT GAGCTATGAA CATGCCACTA TCCTGCAGCC TGGGCAACAG AGCAAGATCC 000400 000401 TGTCTCAAAA AAAAAATTAA GGTCAAGAGG AAAAGTTACC AAATTTCTCT GAGCCTTAAC TTTCCTATCT GTAAGATGGT 000480 000481 TATAATAATG CCTGTTCTTC CTACTACATG TGGGATAAGT GACAATAAAA TGTTATTGTG AAAGTGCTTT AGAATATATA 000560 000561 AATATATGGG GGGAGAGAGA AGAGACATCC ACACACACAC AAGCACATTT AAAAAGACTT TATGCAAAAG TACGGCTTTG 000640 000641 TTAATGATTT GATTTTGATT TGTTAATTTT GATTTTGATT TGTTGATTTG TTAATGATTT GATTTTGATT TGTTAATTAA 000720 000721 TTAACCACAG ATTTATTGAG CACCTGTCAG TTACTATTTC AGTGCTGGCC ATAAGTGGAG AACAAGAGAG ACATGGTGGC 000800 000801 TGCCTTCCTG AGCTGATAAT CTGAACGAGG TGGAGCTGGA TGGCAGAGGG AGAGACAAAG AGGACAAATA TACAACAGAT 000880 000881 AAACAAGAGA ACGTTGGAAA GTGCTGAATG CACTGAAGAA GTTAAGTAGG GTGTTAATGA GACTATGCAG AATTGATATG 000960 000961 GAATTGCACG TATATGTATG GCTGGGCTAA GATTTGCAAG GGCAGAGGGG AGATTTAGGG CCAAATCAAG CAGGCCTTGT 001040 001041 ATACTCTGCC ATGACCAGGA TTGGGCTTTA TTCTGGAGAT AATGTGAATC TATGGAAGGA CTTACATAAG AAAAGATGAA 001120 001121 GTCAGTTTTA TGTTTCAAAA TGATCAATGT GTCTGGGGTG GTCCTGCTAA TGTAGTCCAG GGGCCTCCCA AAGTGCTCTG 001200 001201 GGATTACAGG TGTGAGCCAC TGTGCCCGGC CTGTTAAATC GTTTTTCTAA GGTAACATAG CTGATGAGGT ACAGCCAGTA 001280 001281 TGACTCCAGA GAGCACACTC GTAACTAGTG CACAAAAATG TCTTGGTTTG TTTGAACATT GATTGAAAAA CACAACATCA 001360 001361 GGGCATCTGT GGGGTATACT TCCTGGAATG TGTTTCAAGG GAGCCCTGGA AACAGCGAAT GTTCATAAGG CAGAGAAATG 001440 001441 CCTGGCTGTG TGGGGTAGTT AGAAGCATCC AGGGTCTAGC ACATGAATAT TTGAAGGTTA TGCTAGGGAA GGGCTGAGGC 001520 001521 TATTACACAG TTAACTACAT AAAGACCAGT TACTACTGAT TCCGCTATTG ATCCTTAAGT CAACAAAATG TGTGTGTATA 001600 001601 TACGTATGTG TGTATATCTT TAAGTCAACT AAATGTGTGT GTGTTTGTGT GTGTGTGTGT CTGTGGGGTG TGAAATCGTG 001680 001681 TCAAAAAAGA ATGGGAGGCA ATGGTAGGAG AGCTACAGCT GATTGTTCAG CAGTAGCCAC TTTTCTTCCC TTCCCATCAT 001760 001761 GAATAGAATA TACCACATGC CCATCAATGA TAGACTGGAT AAAGAAAATG TGGCATATAT ACACTGTGGA ATACTATACA 001840 001841 GCGATAAAAA AGGATGAGTT CATGTCCTTT GCAGGGACAT GGATGAAGCT GGAAACTATC ATTCTCAGC

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Predicted Small Protein

Name	`NONHSAT095569_smProtein_977:1081`
Length	`35`
Molecular weight	`4052.6744`
Aromaticity	`0.147058823529`
Instability index	`50.2735294118`
Isoelectric point	`10.6204223633`
Runs	`7`
Runs residual	`0.0197319434103`
Runs probability	`0.0458021046257`
Amino acid sequence	`MAGLRFARAEGRFRAKSSRPCILCHDQDWALFWR`
Secondary structure	`LLHHHHHHHHLLLLLLLLLLLEELLLLHHHHHLL`
PRMN	`-`
PiMo	`-`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>ATGTTCAGGGGAAATCCTCAGAGTCAACCACACCACGGATAAAGTTGAGACACTCTGGTATCAACTCAACACAGCTGTCCCTGATGAACACACGATGGACATAGAGTTTGATGTTGTTCTTTTTCTTCTTGTTCTCAAAAAGATGAAAGGGAGCCTAAGGAGGAATGAATAGCAATGCCCTGAATTCCAACTGACCTTCTACAGAAAAGTACCTGACTGCCAAGTGGTCTTTCCAGTCATTGGTGACCATCACTAATTTCTTTCTCTATGATGTCAATTTTCAGCTCTTCAGCTACTCAGTAGGCCGAGGTTGGGAGGATCTCTTAAGCCCAGGAGGTTGAGGCTGCAGTGAGCTATGAACATGCCACTATCCTGCAGCCTGGGCAACAGAGCAAGATCCTGTCTCAAAAAAAAAATTAAGGTCAAGAGGAAAAGTTACCAAATTTCTCTGAGCCTTAACTTTCCTATCTGTAAGATGGTTATAATAATGCCTGTTCTTCCTACTACATGTGGGATAAGTGACAATAAAATGTTATTGTGAAAGTGCTTTAGAATATATAAATATATGGGGGGAGAGAGAAGAGACATCCACACACACACAAGCACATTTAAAAAGACTTTATGCAAAAGTACGGCTTTGTTAATGATTTGATTTTGATTTGTTAATTTTGATTTTGATTTGTTGATTTGTTAATGATTTGATTTTGATTTGTTAATTAATTAACCACAGATTTATTGAGCACCTGTCAGTTACTATTTCAGTGCTGGCCATAAGTGGAGAACAAGAGAGACATGGTGGCTGCCTTCCTGAGCTGATAATCTGAACGAGGTGGAGCTGGATGGCAGAGGGAGAGACAAAGAGGACAAATATACAACAGATAAACAAGAGAACGTTGGAAAGTGCTGAATGCACTGAAGAAGTTAAGTAGGGTGTTAATGAGACTATGCAGAATTGATATGGAATTGCACGTATATGTATGGCTGGGCTAAGATTTGCAAGGGCAGAGGGGAGATTTAGGGCCAAATCAAGCAGGCCTTGTATACTCTGCCATGACCAGGATTGGGCTTTATTCTGGAGATAATGTGAATCTATGGAAGGACTTACATAAGAAAAGATGAAGTCAGTTTTATGTTTCAAAATGATCAATGTGTCTGGGGTGGTCCTGCTAATGTAGTCCAGGGGCCTCCCAAAGTGCTCTGGGATTACAGGTGTGAGCCACTGTGCCCGGCCTGTTAAATCGTTTTTCTAAGGTAACATAGCTGATGAGGTACAGCCAGTATGACTCCAGAGAGCACACTCGTAACTAGTGCACAAAAATGTCTTGGTTTGTTTGAACATTGATTGAAAAACACAACATCAGGGCATCTGTGGGGTATACTTCCTGGAATGTGTTTCAAGGGAGCCCTGGAAACAGCGAATGTTCATAAGGCAGAGAAATGCCTGGCTGTGTGGGGTAGTTAGAAGCATCCAGGGTCTAGCACATGAATATTTGAAGGTTATGCTAGGGAAGGGCTGAGGCTATTACACAGTTAACTACATAAAGACCAGTTACTACTGATTCCGCTATTGATCCTTAAGTCAACAAAATGTGTGTGTATATACGTATGTGTGTATATCTTTAAGTCAACTAAATGTGTGTGTGTTTGTGTGTGTGTGTGTCTGTGGGGTGTGAAATCGTGTCAAAAAAGAATGGGAGGCAATGGTAGGAGAGCTACAGCTGATTGTTCAGCAGTAGCCACTTTTCTTCCCTTCCCATCATGAATAGAATATACCACATGCCCATCAATGATAGACTGGATAAAGAAAATGTGGCATATATACACTGTGGAATACTATACAGCGATAAAAAAGGATGAGTTCATGTCCTTTGCAGGGACATGGATGAAGCTGGAAACTATCATTCTCAGC</dnaseq>|
 }}
-[[Category:Intergenic]]
+[[Category:Intergenic]][[Category:NONHSAG037512]][[Category:Transcripts]]