Difference between revisions of "NONHSAT096873"

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sequence = <dnaseq>CACAGAGCCCGGGCCGCAGGCACCTCCTCGCCAGCTCTTCCGCTCCTCTCACAGCCGCCAGACCCGCCTGCTGAGCCCCATGGCCCGCGCTGCTCTCTCCGCCGCCCCCAGCAATCCCCGGCTCCTGCGAGTGGCACTGCTGCTCCTGCTCCTGGTAGCCGCTGGCCGGCGCGCAGCAGTCAGTGAGTCTCTTCTTCCCTAGGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATCCAAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGAAGTCATAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATCCTGCATCCCCCATAGTTAAGAAAATCATCGAAAAGATGCTGAACAGTGACAAATCCAACTGACCAGAAGGGAGGAGGAAGCTCACTGGTGGCTGTTCCTGAAGGAGGCCCTGCCCTTATAGGAACAGAAGAGGAAAGAGAGACACAGCTGCAGAGGCCACCTGGATTGTGCCTAATGTGTTTGAGCATCGCTTAGGAGAAGTCTTCTATTTATTTATTTATTCATTAGTTTTGAAGATTCTATGTTAATATTTTAGGTGTAAAATAATTAAGGGTATGATTAACTCTACCTGCACACTGTCCTATTATATTCATTCTTTTTGAAATGTCAACCCCAAGTTAGTTCAATCTGGATTCATATTTAATTTGAAGGTAGAATGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAGGCTGGCGGATCCAAGCAAATGGCCAATGAGATCATTGTGAAGGCAGGGGAATGTATGTGCACATCTGTTTTGTAACTGTTTAGATGAATGTCAGTTGTTATTTATTGAAATGATTTCACAGTGTGTGGTCAACATTTCTCATGTTGAAACTTTAAGAACTAAAATGTTCTAAATATCCCTTGGACATTTTATGTCTTTCTTGTAAGGCATACTGCCTTGTTTAATGGTAGTTTTACAGTGTTTCTGGCTTAGAACAAAGGGGCTTAATTATTGATGTTTTCATAGAGAATATAAAAATAAAGCACTTATAGAAAAAACTCGTTTGATTTTTGGGGGGAAACAAGGGCTACCTTTACTGGAAAATCTGGTGATTTATA</dnaseq>|
 
sequence = <dnaseq>CACAGAGCCCGGGCCGCAGGCACCTCCTCGCCAGCTCTTCCGCTCCTCTCACAGCCGCCAGACCCGCCTGCTGAGCCCCATGGCCCGCGCTGCTCTCTCCGCCGCCCCCAGCAATCCCCGGCTCCTGCGAGTGGCACTGCTGCTCCTGCTCCTGGTAGCCGCTGGCCGGCGCGCAGCAGTCAGTGAGTCTCTTCTTCCCTAGGAGCGTCCGTGGCCACTGAACTGCGCTGCCAGTGCTTGCAGACCCTGCAGGGAATTCACCCCAAGAACATCCAAAGTGTGAACGTGAAGTCCCCCGGACCCCACTGCGCCCAAACCGAAGTCATAGCCACACTCAAGAATGGGCGGAAAGCTTGCCTCAATCCTGCATCCCCCATAGTTAAGAAAATCATCGAAAAGATGCTGAACAGTGACAAATCCAACTGACCAGAAGGGAGGAGGAAGCTCACTGGTGGCTGTTCCTGAAGGAGGCCCTGCCCTTATAGGAACAGAAGAGGAAAGAGAGACACAGCTGCAGAGGCCACCTGGATTGTGCCTAATGTGTTTGAGCATCGCTTAGGAGAAGTCTTCTATTTATTTATTTATTCATTAGTTTTGAAGATTCTATGTTAATATTTTAGGTGTAAAATAATTAAGGGTATGATTAACTCTACCTGCACACTGTCCTATTATATTCATTCTTTTTGAAATGTCAACCCCAAGTTAGTTCAATCTGGATTCATATTTAATTTGAAGGTAGAATGTTTTCAAATGTTCTCCAGTCATTATGTTAATATTTCTGAGGAGCCTGCAACATGCCAGCCACTGTGATAGAGGCTGGCGGATCCAAGCAAATGGCCAATGAGATCATTGTGAAGGCAGGGGAATGTATGTGCACATCTGTTTTGTAACTGTTTAGATGAATGTCAGTTGTTATTTATTGAAATGATTTCACAGTGTGTGGTCAACATTTCTCATGTTGAAACTTTAAGAACTAAAATGTTCTAAATATCCCTTGGACATTTTATGTCTTTCTTGTAAGGCATACTGCCTTGTTTAATGGTAGTTTTACAGTGTTTCTGGCTTAGAACAAAGGGGCTTAATTATTGATGTTTTCATAGAGAATATAAAAATAAAGCACTTATAGAAAAAACTCGTTTGATTTTTGGGGGGAAACAAGGGCTACCTTTACTGGAAAATCTGGTGATTTATA</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG038187]][[Category:Transcripts]]

Latest revision as of 01:00, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT096873

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1192 nt

Genomic location

chr4+:74735109..74737019

Exon number

4

Exons

74735109..74735287,74735363..74735509,74735623..74735706,74736238..74737019

Genome context

Sequence
000001 CACAGAGCCC GGGCCGCAGG CACCTCCTCG CCAGCTCTTC CGCTCCTCTC ACAGCCGCCA GACCCGCCTG CTGAGCCCCA 000080
000081 TGGCCCGCGC TGCTCTCTCC GCCGCCCCCA GCAATCCCCG GCTCCTGCGA GTGGCACTGC TGCTCCTGCT CCTGGTAGCC 000160
000161 GCTGGCCGGC GCGCAGCAGT CAGTGAGTCT CTTCTTCCCT AGGAGCGTCC GTGGCCACTG AACTGCGCTG CCAGTGCTTG 000240
000241 CAGACCCTGC AGGGAATTCA CCCCAAGAAC ATCCAAAGTG TGAACGTGAA GTCCCCCGGA CCCCACTGCG CCCAAACCGA 000320
000321 AGTCATAGCC ACACTCAAGA ATGGGCGGAA AGCTTGCCTC AATCCTGCAT CCCCCATAGT TAAGAAAATC ATCGAAAAGA 000400
000401 TGCTGAACAG TGACAAATCC AACTGACCAG AAGGGAGGAG GAAGCTCACT GGTGGCTGTT CCTGAAGGAG GCCCTGCCCT 000480
000481 TATAGGAACA GAAGAGGAAA GAGAGACACA GCTGCAGAGG CCACCTGGAT TGTGCCTAAT GTGTTTGAGC ATCGCTTAGG 000560
000561 AGAAGTCTTC TATTTATTTA TTTATTCATT AGTTTTGAAG ATTCTATGTT AATATTTTAG GTGTAAAATA ATTAAGGGTA 000640
000641 TGATTAACTC TACCTGCACA CTGTCCTATT ATATTCATTC TTTTTGAAAT GTCAACCCCA AGTTAGTTCA ATCTGGATTC 000720
000721 ATATTTAATT TGAAGGTAGA ATGTTTTCAA ATGTTCTCCA GTCATTATGT TAATATTTCT GAGGAGCCTG CAACATGCCA 000800
000801 GCCACTGTGA TAGAGGCTGG CGGATCCAAG CAAATGGCCA ATGAGATCAT TGTGAAGGCA GGGGAATGTA TGTGCACATC 000880
000881 TGTTTTGTAA CTGTTTAGAT GAATGTCAGT TGTTATTTAT TGAAATGATT TCACAGTGTG TGGTCAACAT TTCTCATGTT 000960
000961 GAAACTTTAA GAACTAAAAT GTTCTAAATA TCCCTTGGAC ATTTTATGTC TTTCTTGTAA GGCATACTGC CTTGTTTAAT 001040
001041 GGTAGTTTTA CAGTGTTTCT GGCTTAGAAC AAAGGGGCTT AATTATTGAT GTTTTCATAG AGAATATAAA AATAAAGCAC 001120
001121 TTATAGAAAA AACTCGTTTG ATTTTTGGGG GGAAACAAGG GCTACCTTTA CTGGAAAATC TGGTGATTTA TA
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Predicted Small Protein

Name NONHSAT096873_smProtein_794:889
Length 32
Molecular weight 3182.774
Aromaticity 0.0
Instability index 95.1451612903
Isoelectric point 4.78338623047
Runs 7
Runs residual 0.0245295698925
Runs probability 0.0301309713075
Amino acid sequence MPATVIEAGGSKQMANEIIVKAGECMCTSVL
Secondary structure LLEEEEELLLLHHHHHHHHHHLLLEEELLLL
PRMN -
PiMo -