Difference between revisions of "NONHSAT098148"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GCTGTTACCTCTTCTGGCGTCCGTGCCCGCGGAAGTTCGCTCCTAGGGAAGTCGCTCGCGTCCTCAAGAGCACCTGAGAGGATCTCGGCGAAGCGGAAGGCTTTGGTGCCAGCTGGGAGAGTCTGCGCCGGATTTCCTCAGCTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGACGCCCTCGCGAGGGGCGGGAGTGCGGGAGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTATCCATGAATTTAACCTGCCCATCATTCTTCCTAAACAAGAGACTATTGAAAAGTCAGGGTGTTCAAAATGGCTTCAGATCTTATCAGGACAATCTTGGCTGTTGCACTAATTTCCAAACTTGTAAGTGCAATGGATCTGCAGTTCTACTTGGCAAGATAACCATTTTAAGTTGAATGAGAATGACATCACACTCACACCTGCAAAATCTAAAATGTCTAATAAAGTAGATTCCTATGTCTGAACTTCAATTTTAGGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCTGGGAATGGCAAGGTGCCAGGATTTGTTTTTGGTTCGCTTGCAGGGGTGGAAACTTGGAACTAGgttccaagatggtccccgcagcaccccacaagaagaaggaggaagcccacagagaaaacggggcatgccagttcaaatccacttccttttaaagagcttcctcagcagcccaataacttttgccttcatctcattggccagaactgtgtcattggctactgctatctgcaagattgtctgagaaatgtagtttttgtagctggatatataactgcctttgacaaaa</dnaseq>| | sequence = <dnaseq>GCTGTTACCTCTTCTGGCGTCCGTGCCCGCGGAAGTTCGCTCCTAGGGAAGTCGCTCGCGTCCTCAAGAGCACCTGAGAGGATCTCGGCGAAGCGGAAGGCTTTGGTGCCAGCTGGGAGAGTCTGCGCCGGATTTCCTCAGCTCCTTGGCGCGTTTCCTCGGAGCCGGGGGAGGCAAAGCACGGACCCCGGAGTCGGCGCCCATAGCGGGACGCCCTCGCGAGGGGCGGGAGTGCGGGAGAGCCGAGCTGCTGCCCTTGACTGGTGCTCAGGGGACCACAGCTGCAATGACAGTTTGGGCCTGCAAAAAGAAGGCTGGAACAACGGGAGATGGAAGCTTTCTGCAAATGCAGCACCACTGGTATCCATGAATTTAACCTGCCCATCATTCTTCCTAAACAAGAGACTATTGAAAAGTCAGGGTGTTCAAAATGGCTTCAGATCTTATCAGGACAATCTTGGCTGTTGCACTAATTTCCAAACTTGTAAGTGCAATGGATCTGCAGTTCTACTTGGCAAGATAACCATTTTAAGTTGAATGAGAATGACATCACACTCACACCTGCAAAATCTAAAATGTCTAATAAAGTAGATTCCTATGTCTGAACTTCAATTTTAGGGCACAGCTGTAGATGCAGAACTGATGCCATCTGGTGCGATTCTACAGAATAAGAGAGAAAATTTACCCAGAGTGTGCCATGCACTGGCTTTTCTGGGAATGGCAAGGTGCCAGGATTTGTTTTTGGTTCGCTTGCAGGGGTGGAAACTTGGAACTAGgttccaagatggtccccgcagcaccccacaagaagaaggaggaagcccacagagaaaacggggcatgccagttcaaatccacttccttttaaagagcttcctcagcagcccaataacttttgccttcatctcattggccagaactgtgtcattggctactgctatctgcaagattgtctgagaaatgtagtttttgtagctggatatataactgcctttgacaaaa</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG038791]][[Category:Transcripts]] |
Latest revision as of 01:06, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT098148 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1002 nt |
| Genomic location |
chr4-:122681404..122686582 |
| Exon number |
5 |
| Exons |
122681404..122681629,122682693..122683047,122683882..122683953,122684919..122685027,122686343..122686582 |
| Genome context |
|
| Sequence |
000001 GCTGTTACCT CTTCTGGCGT CCGTGCCCGC GGAAGTTCGC TCCTAGGGAA GTCGCTCGCG TCCTCAAGAG CACCTGAGAG 000080
000081 GATCTCGGCG AAGCGGAAGG CTTTGGTGCC AGCTGGGAGA GTCTGCGCCG GATTTCCTCA GCTCCTTGGC GCGTTTCCTC 000160 000161 GGAGCCGGGG GAGGCAAAGC ACGGACCCCG GAGTCGGCGC CCATAGCGGG ACGCCCTCGC GAGGGGCGGG AGTGCGGGAG 000240 000241 AGCCGAGCTG CTGCCCTTGA CTGGTGCTCA GGGGACCACA GCTGCAATGA CAGTTTGGGC CTGCAAAAAG AAGGCTGGAA 000320 000321 CAACGGGAGA TGGAAGCTTT CTGCAAATGC AGCACCACTG GTATCCATGA ATTTAACCTG CCCATCATTC TTCCTAAACA 000400 000401 AGAGACTATT GAAAAGTCAG GGTGTTCAAA ATGGCTTCAG ATCTTATCAG GACAATCTTG GCTGTTGCAC TAATTTCCAA 000480 000481 ACTTGTAAGT GCAATGGATC TGCAGTTCTA CTTGGCAAGA TAACCATTTT AAGTTGAATG AGAATGACAT CACACTCACA 000560 000561 CCTGCAAAAT CTAAAATGTC TAATAAAGTA GATTCCTATG TCTGAACTTC AATTTTAGGG CACAGCTGTA GATGCAGAAC 000640 000641 TGATGCCATC TGGTGCGATT CTACAGAATA AGAGAGAAAA TTTACCCAGA GTGTGCCATG CACTGGCTTT TCTGGGAATG 000720 000721 GCAAGGTGCC AGGATTTGTT TTTGGTTCGC TTGCAGGGGT GGAAACTTGG AACTAGgttc caagatggtc cccgcagcac 000800 000801 cccacaagaa gaaggaggaa gcccacagag aaaacggggc atgccagttc aaatccactt ccttttaaag agcttcctca 000880 000881 gcagcccaat aacttttgcc ttcatctcat tggccagaac tgtgtcattg gctactgcta tctgcaagat tgtctgagaa 000960 000961 atgtagtttt tgtagctgga tatataactg cctttgacaa aa |
Predicted Small Protein
| Name | NONHSAT098148_smProtein_329:472 |
| Length | 48 |
| Molecular weight | 5347.2154 |
| Aromaticity | 0.0851063829787 |
| Instability index | 65.2042553191 |
| Isoelectric point | 6.69378662109 |
| Runs | 9 |
| Runs residual | 0.0252127659574 |
| Runs probability | 0.0469194684881 |
| Amino acid sequence | MEAFCKCSTTGIHEFNLPIILPKQETIEKSGCSKWLQILSGQSWLLH |
| Secondary structure | LLLEEELLLLLLLLLLLLEELLLLLEEELLLLHHHHHHHLLLLLLLL |
| PRMN | - |
| PiMo | - |
