Difference between revisions of "NONHSAT099329"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>ACTAATGGATTCTACTTCACATTATATAGGACATGGGACTTCGGAGCTTAATGGGATATCGATCTTCATCATGCTTAATACTTACTTTTCAAGAGAAAGCAATTGTAGACCAGTGTGGTTAAGTGACGGTTACAAGCCTTCATATCCAGTAAGCAGAAGATGAAATATAATTTGATGTTTGCCCTTGTTTGAATACTCCATGAAGATGAGGAAAATACATGTTTGTGTCTAACAGTGTCTGGCATGTGTGATTTCTATTGAGATGGACTCAATCTCAGAGATTCTATTCTCAGCTGTGTCCAGTCTACTGAGAGGCCCATCAAAGATTACTCAAGGAGCCGTCTCATGTAGAAAGACGCCCTCATAGGCTCTCACAAACTGTTGCAAGCATCTCAAATTTTATTGACTGCTGGGTCTTACAATTCCTCACCAGATGGCTTTGAACACAGTTCGATCATCAATCTCATTGATGCTACTGATAATTCTATTGGAACAGCAGGAGATGGCTCTAGCTCCTAAACCTGCCACTCGAAACACCTGTCATCACCTCGAAAGATCTTTCCAATACCCACTGGTACAGTTGTAACTCAATCACTTCGCAAGACAGATAATTGCATGTGGCCAAAGATGTACCTGGTCAACAGGACAGGTTAGACTATCTGCTCTCAGGTAGTCCCTCCAAATCAATGGCTGGACTCGGTTGTTCAAAATGAATAGGAAATCCTAAGGCTTATCAGCAAATTGGAAAGTCATGTTCGAGGTCCTATCAAGCTAGGCTCCTAAAAGATATAGTCCCCACCTGGAGGAGGGCATCAAAGAATTTTAAACAGCTCTTTCATTTTAGGGCCACTATTTGTGCCCTAAGACTATGCTTCTTGTACAGAAGCTAGCTATTAATTTGCCTCCCACTCAAACATGTTTGCTTAAAAACTTTAATTGTGGTTATTAGGGAAGTTCAGAGTGATTTGGGTCACATTACCAGAGATCATGTATCCAAAACACAACTGTAGAGATCTCTCCCAAATGTATCTACCCTTGTTTACTCATGGGAACTTCCTGGGAATGTAACTGACTCATTACATTGTCACAACTGTGGGCAGTTTCCCTAAAATGGGAATCATCCAGTTAGAAAGGGTAGTAAAAAATATGTGTCCAACTTTATCTAAAGTCATCAGTGATGCCATCTGACCCTTGAAAGGTATTCAGGTCGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCAGTTTGGGAGGCTGAGGTGGGCAGACCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCGATATGATGAATTTTTAGTCTCTACTAAAAATACAAAAGTTAGCCAGGCATGGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGCTGAGACAGGAGAATCACTTGAACACAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGTACCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTAAAAAAAAAAAAAAGAAAAGAAAGAAAGAAAAAAGAAAGGTATTCAGATCAGCCTCAACTCACTGAAACATTCTGCTGACTCCTGCTCTATAACTTGTTGGATCTGCCAGATCATATCACCGAAGTGGTAAGGCTGTTTCTACAACAGCGTACAACTGCTGCTAAGCTGACTTCGGCTCTAGACCCACTCAAAATTGGCAGTGTTCTAAGTCACCTGATAAATGAATCAAAGCAGAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>ACTAATGGATTCTACTTCACATTATATAGGACATGGGACTTCGGAGCTTAATGGGATATCGATCTTCATCATGCTTAATACTTACTTTTCAAGAGAAAGCAATTGTAGACCAGTGTGGTTAAGTGACGGTTACAAGCCTTCATATCCAGTAAGCAGAAGATGAAATATAATTTGATGTTTGCCCTTGTTTGAATACTCCATGAAGATGAGGAAAATACATGTTTGTGTCTAACAGTGTCTGGCATGTGTGATTTCTATTGAGATGGACTCAATCTCAGAGATTCTATTCTCAGCTGTGTCCAGTCTACTGAGAGGCCCATCAAAGATTACTCAAGGAGCCGTCTCATGTAGAAAGACGCCCTCATAGGCTCTCACAAACTGTTGCAAGCATCTCAAATTTTATTGACTGCTGGGTCTTACAATTCCTCACCAGATGGCTTTGAACACAGTTCGATCATCAATCTCATTGATGCTACTGATAATTCTATTGGAACAGCAGGAGATGGCTCTAGCTCCTAAACCTGCCACTCGAAACACCTGTCATCACCTCGAAAGATCTTTCCAATACCCACTGGTACAGTTGTAACTCAATCACTTCGCAAGACAGATAATTGCATGTGGCCAAAGATGTACCTGGTCAACAGGACAGGTTAGACTATCTGCTCTCAGGTAGTCCCTCCAAATCAATGGCTGGACTCGGTTGTTCAAAATGAATAGGAAATCCTAAGGCTTATCAGCAAATTGGAAAGTCATGTTCGAGGTCCTATCAAGCTAGGCTCCTAAAAGATATAGTCCCCACCTGGAGGAGGGCATCAAAGAATTTTAAACAGCTCTTTCATTTTAGGGCCACTATTTGTGCCCTAAGACTATGCTTCTTGTACAGAAGCTAGCTATTAATTTGCCTCCCACTCAAACATGTTTGCTTAAAAACTTTAATTGTGGTTATTAGGGAAGTTCAGAGTGATTTGGGTCACATTACCAGAGATCATGTATCCAAAACACAACTGTAGAGATCTCTCCCAAATGTATCTACCCTTGTTTACTCATGGGAACTTCCTGGGAATGTAACTGACTCATTACATTGTCACAACTGTGGGCAGTTTCCCTAAAATGGGAATCATCCAGTTAGAAAGGGTAGTAAAAAATATGTGTCCAACTTTATCTAAAGTCATCAGTGATGCCATCTGACCCTTGAAAGGTATTCAGGTCGGCCGGGTGTGGTGGCTCACACCTGTAATCCCAGCAGTTTGGGAGGCTGAGGTGGGCAGACCACCTGAGGTCAGGAGTTTGAGACCAGCCTGACCGATATGATGAATTTTTAGTCTCTACTAAAAATACAAAAGTTAGCCAGGCATGGTGGCATGCGCCTGTAATCCCAGCTACTCAGGAGCTGAGACAGGAGAATCACTTGAACACAGGAGGCGGAGGTTGCAGTGAGCCGAGATTGTACCATTGTACTCCAGCCTGGGCAACAAGAGCAAAACTCTGTCTAAAAAAAAAAAAAAGAAAAGAAAGAAAGAAAAAAGAAAGGTATTCAGATCAGCCTCAACTCACTGAAACATTCTGCTGACTCCTGCTCTATAACTTGTTGGATCTGCCAGATCATATCACCGAAGTGGTAAGGCTGTTTCTACAACAGCGTACAACTGCTGCTAAGCTGACTTCGGCTCTAGACCCACTCAAAATTGGCAGTGTTCTAAGTCACCTGATAAATGAATCAAAGCAGAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG039381]][[Category:Transcripts]] |
Latest revision as of 01:10, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT099329 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1741 nt |
Genomic location |
chr4+:175752879..175797115 |
Exon number |
5 |
Exons |
175752879..175753037,175756000..175756088,175777682..175777758,175789957..175791186,175796946..175797115 |
Genome context |
|
Sequence |
000001 ACTAATGGAT TCTACTTCAC ATTATATAGG ACATGGGACT TCGGAGCTTA ATGGGATATC GATCTTCATC ATGCTTAATA 000080
000081 CTTACTTTTC AAGAGAAAGC AATTGTAGAC CAGTGTGGTT AAGTGACGGT TACAAGCCTT CATATCCAGT AAGCAGAAGA 000160 000161 TGAAATATAA TTTGATGTTT GCCCTTGTTT GAATACTCCA TGAAGATGAG GAAAATACAT GTTTGTGTCT AACAGTGTCT 000240 000241 GGCATGTGTG ATTTCTATTG AGATGGACTC AATCTCAGAG ATTCTATTCT CAGCTGTGTC CAGTCTACTG AGAGGCCCAT 000320 000321 CAAAGATTAC TCAAGGAGCC GTCTCATGTA GAAAGACGCC CTCATAGGCT CTCACAAACT GTTGCAAGCA TCTCAAATTT 000400 000401 TATTGACTGC TGGGTCTTAC AATTCCTCAC CAGATGGCTT TGAACACAGT TCGATCATCA ATCTCATTGA TGCTACTGAT 000480 000481 AATTCTATTG GAACAGCAGG AGATGGCTCT AGCTCCTAAA CCTGCCACTC GAAACACCTG TCATCACCTC GAAAGATCTT 000560 000561 TCCAATACCC ACTGGTACAG TTGTAACTCA ATCACTTCGC AAGACAGATA ATTGCATGTG GCCAAAGATG TACCTGGTCA 000640 000641 ACAGGACAGG TTAGACTATC TGCTCTCAGG TAGTCCCTCC AAATCAATGG CTGGACTCGG TTGTTCAAAA TGAATAGGAA 000720 000721 ATCCTAAGGC TTATCAGCAA ATTGGAAAGT CATGTTCGAG GTCCTATCAA GCTAGGCTCC TAAAAGATAT AGTCCCCACC 000800 000801 TGGAGGAGGG CATCAAAGAA TTTTAAACAG CTCTTTCATT TTAGGGCCAC TATTTGTGCC CTAAGACTAT GCTTCTTGTA 000880 000881 CAGAAGCTAG CTATTAATTT GCCTCCCACT CAAACATGTT TGCTTAAAAA CTTTAATTGT GGTTATTAGG GAAGTTCAGA 000960 000961 GTGATTTGGG TCACATTACC AGAGATCATG TATCCAAAAC ACAACTGTAG AGATCTCTCC CAAATGTATC TACCCTTGTT 001040 001041 TACTCATGGG AACTTCCTGG GAATGTAACT GACTCATTAC ATTGTCACAA CTGTGGGCAG TTTCCCTAAA ATGGGAATCA 001120 001121 TCCAGTTAGA AAGGGTAGTA AAAAATATGT GTCCAACTTT ATCTAAAGTC ATCAGTGATG CCATCTGACC CTTGAAAGGT 001200 001201 ATTCAGGTCG GCCGGGTGTG GTGGCTCACA CCTGTAATCC CAGCAGTTTG GGAGGCTGAG GTGGGCAGAC CACCTGAGGT 001280 001281 CAGGAGTTTG AGACCAGCCT GACCGATATG ATGAATTTTT AGTCTCTACT AAAAATACAA AAGTTAGCCA GGCATGGTGG 001360 001361 CATGCGCCTG TAATCCCAGC TACTCAGGAG CTGAGACAGG AGAATCACTT GAACACAGGA GGCGGAGGTT GCAGTGAGCC 001440 001441 GAGATTGTAC CATTGTACTC CAGCCTGGGC AACAAGAGCA AAACTCTGTC TAAAAAAAAA AAAAAGAAAA GAAAGAAAGA 001520 001521 AAAAAGAAAG GTATTCAGAT CAGCCTCAAC TCACTGAAAC ATTCTGCTGA CTCCTGCTCT ATAACTTGTT GGATCTGCCA 001600 001601 GATCATATCA CCGAAGTGGT AAGGCTGTTT CTACAACAGC GTACAACTGC TGCTAAGCTG ACTTCGGCTC TAGACCCACT 001680 001681 CAAAATTGGC AGTGTTCTAA GTCACCTGAT AAATGAATCA AAGCAGAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | NONHSAT099329_smProtein_32:121 |
Length | 30 |
Molecular weight | 3207.7651 |
Aromaticity | 0.0689655172414 |
Instability index | 75.8344827586 |
Isoelectric point | 7.81097412109 |
Runs | 6 |
Runs residual | 0.0073275862069 |
Runs probability | 0.0381263616557 |
Amino acid sequence | MGLRSLMGYRSSSCLILTFQEKAIVDQCG |
Secondary structure | LLLHHHLLLLLLLLLEEHHHHHHHHHHLL |
PRMN | - |
PiMo | - |