Difference between revisions of "NONHSAT100032"

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sequence = <dnaseq>GTTTCATGGAAGACACTTTTTCCACGGACAAGTGTGGGGATGGTGGGGATGGTTTGGAGATGAAACGGTTCCAGCTCAGATGAGCAGCATTAGATTCTCATAAGCGGCGCATAACCTAGATCCTTCGCATGCGCAGTTCACAACAGGGTTCCACTCCTATGAGAATCTAATGCCACCACTGATCTGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGTTGTGACTGGAGGTGGAGCTCACACAGTTAATGCTTGGAGAGGAGGCGGAGCTCACACAGTAATGCTGTGACAGGAGGCAGAGCTCACACAGTAATGATATGACAGGAGGCGGCGCTCACACAGTAATGCTCTGGTGGGAGGCAGAGCTCAGAGAGTAATGCTCTGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGTGGAGCTAACAGAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGTTCACACAGTAATGCTCTGGCAGGAGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCCGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTTGCAGGGGGCGGAGCTCAGAGTAATGCTCTGGCAGGGGCGGAGCTCAGAGAGTAATGCTCTGGCAGGGGTTGGAATTCACACAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGCTCACAAGGTAATGCTCTGGCATGGGCGGAGCTCACACAGTAATGCTCTGACGGGAGGCGGAGCTCACACAGTAATGCTCTGGCGGGAGGCGGAGCTCACACAGTAATGCTCTGGCAGGGGGCGGAGCACACACAGTAATGCTCTGACAGGGCGGAGCTCACACAGTAATGCTCTGCAGGGGGCAGAGCTCACAGAGTAATGCTCTGGCAGGGGGTGGAGTTCACACAGTAGCTCACCGGCCCACTGCTCACCTCCTACTGTGCGGCCTGGCTCCTAACAGGCCATGGACTGGTAACAATCTGTGGCCTGGGGATTGGGGACCCCTGATTTGAATAATCGAGGACACACTCACCTAGTAAACCATCTGCCAAGAAAAAGGAGGAAATGTTCGTTTTCTCCATTTGCTCTCAGGCACCAACATTAATTTGAACTTAGAAATAAACTACAACAAAGCCAGGCATGGTGGTTCACACCTATAATTCCAGCACTTTGGGAGGCCAAGGAGGGAGGATCACTTGAGCCCAGGAGTCTGAGACCAGCTTAGGCAACACAGTGAGACCCTGTCCCTACAATTACAAAATAAACTAGCTGGGCGTGGTGGTGCACACCTGTAGCCCCAACTACTCAGAAGGCTGAGTTGGGAAGATCACCTGAGCTGCCCAGGAGTCTGAGGCTGCAGTGAGCTGAGATTGTACCACTGCACCA</dnaseq>|
 
sequence = <dnaseq>GTTTCATGGAAGACACTTTTTCCACGGACAAGTGTGGGGATGGTGGGGATGGTTTGGAGATGAAACGGTTCCAGCTCAGATGAGCAGCATTAGATTCTCATAAGCGGCGCATAACCTAGATCCTTCGCATGCGCAGTTCACAACAGGGTTCCACTCCTATGAGAATCTAATGCCACCACTGATCTGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGCTTGGACAGGAGGCGGAGCTCACACAGTAATGTTGTGACTGGAGGTGGAGCTCACACAGTTAATGCTTGGAGAGGAGGCGGAGCTCACACAGTAATGCTGTGACAGGAGGCAGAGCTCACACAGTAATGATATGACAGGAGGCGGCGCTCACACAGTAATGCTCTGGTGGGAGGCAGAGCTCAGAGAGTAATGCTCTGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCCCACAGAGTAATGCTCTGGCAGGGGGTGGAGCTAACAGAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGTTCACACAGTAATGCTCTGGCAGGAGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCTGGCAGGGGGCGGAGCTCACAGTAATGCTGTGACTGGAGGCGGAGCTCACAGAGTAATGCTCCGGCAGGAGGCGGAGCCCACAGAGTAATGCTCTTGCAGGGGGCGGAGCTCAGAGTAATGCTCTGGCAGGGGCGGAGCTCAGAGAGTAATGCTCTGGCAGGGGTTGGAATTCACACAGTAATGCTCTGGCAGGGGGTGGAGCTCACCCAGTAATGCTCTGGCAGGGGTTGGAGCTCACAAGGTAATGCTCTGGCATGGGCGGAGCTCACACAGTAATGCTCTGACGGGAGGCGGAGCTCACACAGTAATGCTCTGGCGGGAGGCGGAGCTCACACAGTAATGCTCTGGCAGGGGGCGGAGCACACACAGTAATGCTCTGACAGGGCGGAGCTCACACAGTAATGCTCTGCAGGGGGCAGAGCTCACAGAGTAATGCTCTGGCAGGGGGTGGAGTTCACACAGTAGCTCACCGGCCCACTGCTCACCTCCTACTGTGCGGCCTGGCTCCTAACAGGCCATGGACTGGTAACAATCTGTGGCCTGGGGATTGGGGACCCCTGATTTGAATAATCGAGGACACACTCACCTAGTAAACCATCTGCCAAGAAAAAGGAGGAAATGTTCGTTTTCTCCATTTGCTCTCAGGCACCAACATTAATTTGAACTTAGAAATAAACTACAACAAAGCCAGGCATGGTGGTTCACACCTATAATTCCAGCACTTTGGGAGGCCAAGGAGGGAGGATCACTTGAGCCCAGGAGTCTGAGACCAGCTTAGGCAACACAGTGAGACCCTGTCCCTACAATTACAAAATAAACTAGCTGGGCGTGGTGGTGCACACCTGTAGCCCCAACTACTCAGAAGGCTGAGTTGGGAAGATCACCTGAGCTGCCCAGGAGTCTGAGGCTGCAGTGAGCTGAGATTGTACCACTGCACCA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG039677]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 01:13, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT100032

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1697 nt

Genomic location

chr5+:1569635..1571902

Exon number

2

Exons

1569635..1570008,1570425..1571902

Genome context

Sequence
000001 GTTTCATGGA AGACACTTTT TCCACGGACA AGTGTGGGGA TGGTGGGGAT GGTTTGGAGA TGAAACGGTT CCAGCTCAGA 000080
000081 TGAGCAGCAT TAGATTCTCA TAAGCGGCGC ATAACCTAGA TCCTTCGCAT GCGCAGTTCA CAACAGGGTT CCACTCCTAT 000160
000161 GAGAATCTAA TGCCACCACT GATCTGACAG GAGGCGGAGC TCACACAGTA ATGCTTGGAC AGGAGGCGGA GCTCACACAG 000240
000241 TAATGCTTGG ACAGGAGGCG GAGCTCACAC AGTAATGCTT GGACAGGAGG CGGAGCTCAC ACAGTAATGT TGTGACTGGA 000320
000321 GGTGGAGCTC ACACAGTTAA TGCTTGGAGA GGAGGCGGAG CTCACACAGT AATGCTGTGA CAGGAGGCAG AGCTCACACA 000400
000401 GTAATGATAT GACAGGAGGC GGCGCTCACA CAGTAATGCT CTGGTGGGAG GCAGAGCTCA GAGAGTAATG CTCTGGCAGG 000480
000481 AGGCGGAGCC CACAGAGTAA TGCTCTGGCA GGGGGCGGAG CTCACAGTAA TGCTGTGACT GGAGGCGGAG CTCACAGAGT 000560
000561 AATGCTCTGG CAGGGGGCGG AGCCCACAGA GTAATGCTCT GGCAGGGGGT GGAGCTAACA GAGTAATGCT CTGGCAGGGG 000640
000641 GTGGAGCTCA CCCAGTAATG CTCTGGCAGG GGTTGGAGTT CACACAGTAA TGCTCTGGCA GGAGGCGGAG CTCACAGTAA 000720
000721 TGCTGTGACT GGAGGCGGAG CTCACAGAGT AATGCTCTGG CAGGGGGCGG AGCTCACAGT AATGCTGTGA CTGGAGGCGG 000800
000801 AGCTCACAGA GTAATGCTCC GGCAGGAGGC GGAGCCCACA GAGTAATGCT CTTGCAGGGG GCGGAGCTCA GAGTAATGCT 000880
000881 CTGGCAGGGG CGGAGCTCAG AGAGTAATGC TCTGGCAGGG GTTGGAATTC ACACAGTAAT GCTCTGGCAG GGGGTGGAGC 000960
000961 TCACCCAGTA ATGCTCTGGC AGGGGTTGGA GCTCACAAGG TAATGCTCTG GCATGGGCGG AGCTCACACA GTAATGCTCT 001040
001041 GACGGGAGGC GGAGCTCACA CAGTAATGCT CTGGCGGGAG GCGGAGCTCA CACAGTAATG CTCTGGCAGG GGGCGGAGCA 001120
001121 CACACAGTAA TGCTCTGACA GGGCGGAGCT CACACAGTAA TGCTCTGCAG GGGGCAGAGC TCACAGAGTA ATGCTCTGGC 001200
001201 AGGGGGTGGA GTTCACACAG TAGCTCACCG GCCCACTGCT CACCTCCTAC TGTGCGGCCT GGCTCCTAAC AGGCCATGGA 001280
001281 CTGGTAACAA TCTGTGGCCT GGGGATTGGG GACCCCTGAT TTGAATAATC GAGGACACAC TCACCTAGTA AACCATCTGC 001360
001361 CAAGAAAAAG GAGGAAATGT TCGTTTTCTC CATTTGCTCT CAGGCACCAA CATTAATTTG AACTTAGAAA TAAACTACAA 001440
001441 CAAAGCCAGG CATGGTGGTT CACACCTATA ATTCCAGCAC TTTGGGAGGC CAAGGAGGGA GGATCACTTG AGCCCAGGAG 001520
001521 TCTGAGACCA GCTTAGGCAA CACAGTGAGA CCCTGTCCCT ACAATTACAA AATAAACTAG CTGGGCGTGG TGGTGCACAC 001600
001601 CTGTAGCCCC AACTACTCAG AAGGCTGAGT TGGGAAGATC ACCTGAGCTG CCCAGGAGTC TGAGGCTGCA GTGAGCTGAG 001680
001681 ATTGTACCAC TGCACCA
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Predicted Small Protein

Name NONHSAT100032_smProtein_845:970
Length 42
Molecular weight 4511.2099
Aromaticity 0.0487804878049
Instability index 51.8853658537
Isoelectric point 5.47821044922
Runs 9
Runs residual 0.0435433188688
Runs probability 0.0468213311351
Amino acid sequence MLLQGAELRVMLWQGRSSESNALAGVGIHTVMLWQGVELTQ
Secondary structure LLLLHHHHHHHHHLLLLLHHHHHHLLLEEEEEEEELEEELL
PRMN -
PiMo -