Difference between revisions of "NONHSAT100042"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ACCGCCCCAGCCCCGGGCGGCCCTGGGCCTGCTGCGGGCGCGGCGCTGCCCGACCAGAGCTTCCTGTGGAACGTCTTCCAGAGGGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACGGCACGTGGACTCCCTTTAATCCAGTGACTGTCAGGTCGATCATATACTACACTGAAGGCTGGTTACGCTCTTATGTGCAATAGAACCTCAAACACATCGTAACACACCTTTGGAGAATCCTTACAAGAACACCAAGTTAACAGTTATCTCTGACCACACTACCTCAGCAAAAAACCAGGAAGAAAAAATATTCTTCAACCCTTTTCAGGGACAGAAAGCATCATTTCAAAAGTCCAAGAAGGGAAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAATCGGCTCGGGGCAAACTCGCTCTTGGACTTGGTTGTCTTTGGTCAGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGGAGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGATGGAAGCATAAGAACATGAGAACTGCGACTCAGCATGCAGAAGtgccgctgggttagggtctccacaaccgagctggtctcagcaagtggcgcccacacatgggggctcgaatccaggtcgaagggtcaccggagcgacagaaaacttggaactaagctggaggacaccgagtactcttatgcagtcccc</dnaseq>| | sequence = <dnaseq>ACCGCCCCAGCCCCGGGCGGCCCTGGGCCTGCTGCGGGCGCGGCGCTGCCCGACCAGAGCTTCCTGTGGAACGTCTTCCAGAGGGTCGATAAAGACAGGAGTGGAGTGATATCAGACACCGAGCTTCAGCAAGCTCTCTCCAACGGCACGTGGACTCCCTTTAATCCAGTGACTGTCAGGTCGATCATATACTACACTGAAGGCTGGTTACGCTCTTATGTGCAATAGAACCTCAAACACATCGTAACACACCTTTGGAGAATCCTTACAAGAACACCAAGTTAACAGTTATCTCTGACCACACTACCTCAGCAAAAAACCAGGAAGAAAAAATATTCTTCAACCCTTTTCAGGGACAGAAAGCATCATTTCAAAAGTCCAAGAAGGGAAGGTCCTGAGGCACGTGAATGGCCAGGATCAGATTGTGCCCGGCCTGTACGCCTGTGGGGAGGCCGCCTGTGCCTCGGTACATGGTGCCAATCGGCTCGGGGCAAACTCGCTCTTGGACTTGGTTGTCTTTGGTCAGGCATGTGCCCTGAGCATCGAAGAGTCATGCAGGCCTGGAGATAAAGTCCCTCCAATTAAACCAAACGCTGGGGAAGAATCTGTCATGAATCTTGACAAATTGAGATTTGCTGATGGAAGCATAAGAACATGAGAACTGCGACTCAGCATGCAGAAGtgccgctgggttagggtctccacaaccgagctggtctcagcaagtggcgcccacacatgggggctcgaatccaggtcgaagggtcaccggagcgacagaaaacttggaactaagctggaggacaccgagtactcttatgcagtcccc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG039676]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:13, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT100042 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
829 nt |
| Genomic location |
chr5-:1585102..1634005 |
| Exon number |
7 |
| Exons |
1585102..1585248,1589362..1589480,1593228..1593399,1599742..1599942,1602806..1602850,1632960..1633021,1633923..1634005 |
| Genome context |
|
| Sequence |
000001 ACCGCCCCAG CCCCGGGCGG CCCTGGGCCT GCTGCGGGCG CGGCGCTGCC CGACCAGAGC TTCCTGTGGA ACGTCTTCCA 000080
000081 GAGGGTCGAT AAAGACAGGA GTGGAGTGAT ATCAGACACC GAGCTTCAGC AAGCTCTCTC CAACGGCACG TGGACTCCCT 000160 000161 TTAATCCAGT GACTGTCAGG TCGATCATAT ACTACACTGA AGGCTGGTTA CGCTCTTATG TGCAATAGAA CCTCAAACAC 000240 000241 ATCGTAACAC ACCTTTGGAG AATCCTTACA AGAACACCAA GTTAACAGTT ATCTCTGACC ACACTACCTC AGCAAAAAAC 000320 000321 CAGGAAGAAA AAATATTCTT CAACCCTTTT CAGGGACAGA AAGCATCATT TCAAAAGTCC AAGAAGGGAA GGTCCTGAGG 000400 000401 CACGTGAATG GCCAGGATCA GATTGTGCCC GGCCTGTACG CCTGTGGGGA GGCCGCCTGT GCCTCGGTAC ATGGTGCCAA 000480 000481 TCGGCTCGGG GCAAACTCGC TCTTGGACTT GGTTGTCTTT GGTCAGGCAT GTGCCCTGAG CATCGAAGAG TCATGCAGGC 000560 000561 CTGGAGATAA AGTCCCTCCA ATTAAACCAA ACGCTGGGGA AGAATCTGTC ATGAATCTTG ACAAATTGAG ATTTGCTGAT 000640 000641 GGAAGCATAA GAACATGAGA ACTGCGACTC AGCATGCAGA AGtgccgctg ggttagggtc tccacaaccg agctggtctc 000720 000721 agcaagtggc gcccacacat gggggctcga atccaggtcg aagggtcacc ggagcgacag aaaacttgga actaagctgg 000800 000801 aggacaccga gtactcttat gcagtcccc |
Predicted Small Protein
| Name | NONHSAT100042_smProtein_407:538 |
| Length | 44 |
| Molecular weight | 4843.7715 |
| Aromaticity | 0.0697674418605 |
| Instability index | 86.0627906977 |
| Isoelectric point | 11.7064819336 |
| Runs | 8 |
| Runs residual | 0.0287431408414 |
| Runs probability | 0.0296877760114 |
| Amino acid sequence | MARIRLCPACTPVGRPPVPRYMVPIGSGQTRSWTWLSLVRHVP |
| Secondary structure | LLEEEELLLLLLLLLLLLLLEEEELLLLLLLLLLHHHHHEELL |
| PRMN | - |
| PiMo | - |
