Difference between revisions of "NONHSAT106743"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
(2 intermediate revisions by 2 users not shown)
Line 42: Line 42:
 
sequence = <dnaseq>TTAAAGGACTATGACAATAGCTTGCTGCCTGGAAGGGACACAGAGATGTCACTCAAGTGGATGTTGAGACTACCATGGCCGCCCTTGAGAGGAGCTTCTGTCATGTTTTTGGATATCCCGGAACCTCACTCTGCCCAAGGAACATCCTTCACTGCCTTAGCAGTATAACAGTGGGTGCGTACTCACGAAATAGGATAGACTTTCCACGCGCGCTGTCACCTGCAGGCCAGCGGGGCTGCTGAATGATGGAACCATTGCCCACAACGAAACCGAAGACAGGACATCAAGATGGCCTGCTAGCGGGGTGACACCATCTGACTAGGGTATTATGGACCCTAAACTCTGTACTCCCGCACAAGGGAAGTGCCAAGACCAGCTCAGTCAGGGAGACCCTAACCCAGCGGCGCTAGAGGGAAGCGTGACACTGCAGGGCACATTGAGAGACACTGGGCTTGTAAGGGTGACGGTGATGGGGGGGCGGCAGGCAGCCACCTGATTAGGCTGCACCTGTGAAATCCCAATCTCAACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATCTGCCTTGGGTGAGATCAGGCCAGGGCTGAACCTGTGAGATTCAAATTGGGGCTTCGTTGTTTGTGTACATTCTTGTGAAGTCATTTCTGGGACTTCGTCCCTCCCCACCTTGCTTGCTGTTGGAGCATAACTTACAATATTGTTTCGTTTTTTTTTTTTTTTTTAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAAGCTCTGCCTCCTGGGGTAACTTCATGCAGAGTAAAGAAATACCACACCCAGGACTTTGCAGGTTGCTCAAGCAGATGGCCACATGGACCCTGGCTTCCTCAGAGCCTACTGTGACTAGAGCACAACCAGTACAAGTGACAAGAGACCCCTGAGGGCTCAGCGCAGGCTTTGAGAGGAAAGCGATGCTTGAACTGGGGTGGGGAGAATGAGTCATGGCAATACCCAGCATGTATGGACTGTGTGCCGGACATGACTTTGGTCACGGGGTGAGGTGGCTCAGATAGGATTTGAACCCGAGCAGACAGACTCCTGGACCCACGCACCTCACCAAGTGTGGTTGGCTAGCGAGCCGAAAGAACCCTGGAGGCAGGGTGCTGAAGGAGGGGAGAGTGGTGTGAGGCTCATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCTGGGCATGGTGGCAGGTGCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAGGAGAACTGCTTGAATCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTCACTAAAATGTTTACAGTGGTTATCACTGAGAAAAAATATTAAATGTTAAAGTTGATTTTTACTATCTTTTATCTGCTTTTTTTTTTTTTTGCATCTGCTCCTGTACCTATGTGCAATGATCATGTATTACTTTTGCAATCAGACAAATACATAAGCTCTACTTTAAAACTGTTTATTTATCTACCAGGTTAACGACAAATACTGAAACTCAGTCTTGGCCTGAACCTGGTG</dnaseq>|
 
sequence = <dnaseq>TTAAAGGACTATGACAATAGCTTGCTGCCTGGAAGGGACACAGAGATGTCACTCAAGTGGATGTTGAGACTACCATGGCCGCCCTTGAGAGGAGCTTCTGTCATGTTTTTGGATATCCCGGAACCTCACTCTGCCCAAGGAACATCCTTCACTGCCTTAGCAGTATAACAGTGGGTGCGTACTCACGAAATAGGATAGACTTTCCACGCGCGCTGTCACCTGCAGGCCAGCGGGGCTGCTGAATGATGGAACCATTGCCCACAACGAAACCGAAGACAGGACATCAAGATGGCCTGCTAGCGGGGTGACACCATCTGACTAGGGTATTATGGACCCTAAACTCTGTACTCCCGCACAAGGGAAGTGCCAAGACCAGCTCAGTCAGGGAGACCCTAACCCAGCGGCGCTAGAGGGAAGCGTGACACTGCAGGGCACATTGAGAGACACTGGGCTTGTAAGGGTGACGGTGATGGGGGGGCGGCAGGCAGCCACCTGATTAGGCTGCACCTGTGAAATCCCAATCTCAACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATCTGCCTTGGGTGAGATCAGGCCAGGGCTGAACCTGTGAGATTCAAATTGGGGCTTCGTTGTTTGTGTACATTCTTGTGAAGTCATTTCTGGGACTTCGTCCCTCCCCACCTTGCTTGCTGTTGGAGCATAACTTACAATATTGTTTCGTTTTTTTTTTTTTTTTTAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAAGCTCTGCCTCCTGGGGTAACTTCATGCAGAGTAAAGAAATACCACACCCAGGACTTTGCAGGTTGCTCAAGCAGATGGCCACATGGACCCTGGCTTCCTCAGAGCCTACTGTGACTAGAGCACAACCAGTACAAGTGACAAGAGACCCCTGAGGGCTCAGCGCAGGCTTTGAGAGGAAAGCGATGCTTGAACTGGGGTGGGGAGAATGAGTCATGGCAATACCCAGCATGTATGGACTGTGTGCCGGACATGACTTTGGTCACGGGGTGAGGTGGCTCAGATAGGATTTGAACCCGAGCAGACAGACTCCTGGACCCACGCACCTCACCAAGTGTGGTTGGCTAGCGAGCCGAAAGAACCCTGGAGGCAGGGTGCTGAAGGAGGGGAGAGTGGTGTGAGGCTCATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCTGGGCATGGTGGCAGGTGCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAGGAGAACTGCTTGAATCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTCACTAAAATGTTTACAGTGGTTATCACTGAGAAAAAATATTAAATGTTAAAGTTGATTTTTACTATCTTTTATCTGCTTTTTTTTTTTTTTGCATCTGCTCCTGTACCTATGTGCAATGATCATGTATTACTTTTGCAATCAGACAAATACATAAGCTCTACTTTAAAACTGTTTATTTATCTACCAGGTTAACGACAAATACTGAAACTCAGTCTTGGCCTGAACCTGGTG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG056031]][[Category:Transcripts]][[Category:Transcripts]]

Latest revision as of 01:40, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT106743

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1939 nt

Genomic location

chr6-:2791677..2803927

Exon number

9

Exons

2791677..2791908,2792236..2792383,2792510..2792654,2792753..2792862,2794237..2794368,2796824..2796942,2797957..2798140,2801775..2802117,2803402..2803927

Genome context

Sequence
000001 TTAAAGGACT ATGACAATAG CTTGCTGCCT GGAAGGGACA CAGAGATGTC ACTCAAGTGG ATGTTGAGAC TACCATGGCC 000080
000081 GCCCTTGAGA GGAGCTTCTG TCATGTTTTT GGATATCCCG GAACCTCACT CTGCCCAAGG AACATCCTTC ACTGCCTTAG 000160
000161 CAGTATAACA GTGGGTGCGT ACTCACGAAA TAGGATAGAC TTTCCACGCG CGCTGTCACC TGCAGGCCAG CGGGGCTGCT 000240
000241 GAATGATGGA ACCATTGCCC ACAACGAAAC CGAAGACAGG ACATCAAGAT GGCCTGCTAG CGGGGTGACA CCATCTGACT 000320
000321 AGGGTATTAT GGACCCTAAA CTCTGTACTC CCGCACAAGG GAAGTGCCAA GACCAGCTCA GTCAGGGAGA CCCTAACCCA 000400
000401 GCGGCGCTAG AGGGAAGCGT GACACTGCAG GGCACATTGA GAGACACTGG GCTTGTAAGG GTGACGGTGA TGGGGGGGCG 000480
000481 GCAGGCAGCC ACCTGATTAG GCTGCACCTG TGAAATCCCA ATCTCAACTA TGCAGCCATA AAAAATGATG AGTTCATGTC 000560
000561 CTTTGTAGGG ACATGGATGA AATTGGAAAC CATCATTCTC AGTAAACTAT CGCAAGAACA AAAAACCAAA CACCGCATAT 000640
000641 TCTCACTCAT AGGTGGGAAT TGAACAATGA GATCACATGG ACACAGGAAG GGGAATATCA CACTCTGGGG ACTGTGGTGG 000720
000721 GGTCGGGGGA GGGGGGAGGG ATAGCATTGG GAGATATACC TAATGCTAGA TGACACGTTA GTGGGTGCAG CGCACCAGCA 000800
000801 TGGCACATGT ATACATATGT AACTAACCTG CACAATGTGC ACATGTACCC TAAAACTTAG AGTATAATAA GGAGGAAGAG 000880
000881 GAGGAGGAGG AGGAGGAAGA GGAGGAGGAG GAGGAGGAGG AGGAGGAGAT CTGCCTTGGG TGAGATCAGG CCAGGGCTGA 000960
000961 ACCTGTGAGA TTCAAATTGG GGCTTCGTTG TTTGTGTACA TTCTTGTGAA GTCATTTCTG GGACTTCGTC CCTCCCCACC 001040
001041 TTGCTTGCTG TTGGAGCATA ACTTACAATA TTGTTTCGTT TTTTTTTTTT TTTTTAGACG GAGTCTTGCT CTGTCGCCCA 001120
001121 GGCTGGAGTG CAGTGGTGCA GTCTTGGCTC ACTGCAAGCT CTGCCTCCTG GGGTAACTTC ATGCAGAGTA AAGAAATACC 001200
001201 ACACCCAGGA CTTTGCAGGT TGCTCAAGCA GATGGCCACA TGGACCCTGG CTTCCTCAGA GCCTACTGTG ACTAGAGCAC 001280
001281 AACCAGTACA AGTGACAAGA GACCCCTGAG GGCTCAGCGC AGGCTTTGAG AGGAAAGCGA TGCTTGAACT GGGGTGGGGA 001360
001361 GAATGAGTCA TGGCAATACC CAGCATGTAT GGACTGTGTG CCGGACATGA CTTTGGTCAC GGGGTGAGGT GGCTCAGATA 001440
001441 GGATTTGAAC CCGAGCAGAC AGACTCCTGG ACCCACGCAC CTCACCAAGT GTGGTTGGCT AGCGAGCCGA AAGAACCCTG 001520
001521 GAGGCAGGGT GCTGAAGGAG GGGAGAGTGG TGTGAGGCTC ATGGTGAAAC CCTGTCTCTA CTAAAAATAC AAAAATGAGC 001600
001601 TGGGCATGGT GGCAGGTGCC TGTAATTCCA GCTACTCGGG AGGCTGAGGC AGGAGAACTG CTTGAATCTG GGAGGCAGAG 001680
001681 GTTGCAGTGA GCCGAGATTG CACCACTCAC TAAAATGTTT ACAGTGGTTA TCACTGAGAA AAAATATTAA ATGTTAAAGT 001760
001761 TGATTTTTAC TATCTTTTAT CTGCTTTTTT TTTTTTTTGC ATCTGCTCCT GTACCTATGT GCAATGATCA TGTATTACTT 001840
001841 TTGCAATCAG ACAAATACAT AAGCTCTACT TTAAAACTGT TTATTTATCT ACCAGGTTAA CGACAAATAC TGAAACTCAG 001920
001921 TCTTGGCCTG AACCTGGTG
[back to top]

Predicted Small Protein

Name NONHSAT106743_smProtein_74:241
Length 56
Molecular weight 5998.8805
Aromaticity 0.0909090909091
Instability index 61.3690909091
Isoelectric point 9.29876708984
Runs 9
Runs residual 0.0121212121212
Runs probability 0.0308445700603
Amino acid sequence MAALERSFCHVFGYPGTSLCPRNILHCLSSITVGAYSRNRIDFPRALSPAGQRGC
Secondary structure LHHHHLLEEEEELLLLLLLLLLLLEEEELLEEEEEEEELLLLLLLLLLLLLLLLL
PRMN -
PiMo -