Difference between revisions of "NONHSAT107698"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTTAAACTGCGTTTACCTTAAACAGGCTTACTGTGTTCACTGCTGGACGCCTCTGGGCAATCTTACCCTCCTGGGAACTGAGAGAGACAATGCTAGGAGCCAGAAACATGAGGAATACATGAGCTCGGCGCCAATGGAACATGCTTTCACACCGGGTGCAGCTAACCACCACATCATACAAAACTCGTCGCTGACGTTTTAGATGTATAATCTGATTGGCATGGACTCACAGAGGAGGGAGTAAGGGAAGAGTAAGAAGATTTCAAAGGAGAGACACAGGTTGCAGGTTAGCAGGAGAACAGGCAAGCCAAATGCAAAGGAGCCACTTCAGAAATGTGTCACAGAAAAGTGAAAATGCAACCTAGTGGTAAGTGAAGAGGGGAAGAAGAAAGAAAAAGGACCAGAACCGTGAACTGAAGGGACAGGGAACAGCCAGACGAGAGCTTCAGCCATCACGAGGATGATTTCGGAACCTGGAGAAAATGTGTTCCTGGCTCTATGCCAAATGCATCCTGGACTGGAAACCTCAGAGCTATAAAGTGGAGTGACATGGAAGACAGACACGGAGGCTGCCACGGCCACTATGTACATGGTATTTGTATCTATGGAAACGGAGACTTAAAGTGGCTGGTTAATTCACCAAGCCTGTTTGCTAACAAGTTTGAGCTTAATACCTACCCCCTTACTGTGGAATGCCTAGAACTGAGGCATCGCGAAAGAACCCTCAATCAGAGTGAAACTGCGATACAACCCAGCTGGTATTTTTGAGCTATTCATGAGCTACTCATGACTGAAGGGAAACTGCAGCTGGGAAGAGGAGCCTGTTTTTGTGAGAGACTTTTGCCTTCGTAATGTTAACCGTTTCAGGACCACGTTTATAGCTTCAGGACCTGGCTACGTAATTATACTTAAAATATCCACTGGACACTGTGAAATACACTAACAGGATGGCTGGGTAGAGCAATCTGGGCACTTTGGCCAATTTTAGTCTTGCTGTTTCTTGATGCTCACCTCTATATTAGTTTATTGTTAGGATCAATGATAAATTTAAATGACCTCAGATCTTTGCACCAGATACTCATCATATACAAATGTTTTAGTAAAAAAGAGAATTGTAGATAATACTGTCTAGGAAAATAAGAATTAGGTTTCTTTGAAGAAGGAATCTTTTATAACACCTTAACAGTCACCACTGTGCTCAACCAGACAGATAGTGAAACAGCTTTCTGGGTAATTCACCAATTTCCTTTAAAACATAAGCTACCTGAATGGAGAATACATCTTGTTTCTGAGTTTCAACACTAGCATTTTTGGCTTACTCATGGACAAAGTTCTGTATATAGTATAAAGTCATTAACAAGAAACAGGATATGCTTTAAGACAGAATTCACTGTCTGTTGCTTCAGTAAAAGGACCTCGGGGAATAAAACATTTCTCTCTTATATGCCAGAATGTAGGCTGGTCCCTATGTCATGTCTTCCATTAAGAACACTAAAAAGTCCTTGCAAGAATGGAGATATGCATTCAAGAGAGGTGCTATCACATAGATCTAGTCTGAAGTCTGGAACACTTTCCTCTTCTATGACCCCTCTCTCCCCAGTATTATCTTACTTGCAAAATGGAGACCAAATTCTATCCTGTGAGGCTTTTAATTGCACCATAGTATGCTCTGAGTAGCTTTACACTGCCTGGTACTGATAGTAGTGGCTCGATTTTTAAGAGCCTTCAATTGTAGATGAACATCTCTGTTATTTATCCCtcattcatccatccgttcattcattcaGCCTTCAATCAACATCTCTTGAGTGTCTATTATGTACAGGACATGTACTGAGACAAAAAGGAAACATAAGAGCTTTTTCACTCTAAAAATCTTGGCAATAATGTCAACACCAGAAAGCCTCCTCTGGAGAATCTTACAGAGTGATTGTAGTTTAATACAGGAACACACAGGGCTGTGTAGCATGATACCAGGCCCAGGAGATCAGTAATTACAAATTAAGGGTTAAATCAGAGATTATTCAACAGAGAGGGAGAAAGGAGGAGACAGAGGgaggacctgttgtgttccagccattctggtattcctttatgtatctaatttcattcaaacctcacaacagtcttgtgaggcccttatataattactcccattttgcagatgaagtaactgaggcttagaaaggttaaTAGCACCGGGGAACAATTTCTCTGGGTGAGAATTGGGACTCTGTTGCTGGTCTTCTCAGTTCATTTCCTGAGGTGGATTTACTGAGAGAAGGTGAAATAAAGCCATATTTAGTATACCAGAGAAGGTAGATTTTAAGAATGGTCTCAGTGTTAATACTGAGAAAAAGTCCTGTCAGTTCAGAAAAAATGTGAAGTCTACTTTAGTATTCCTGTAATACTAAACCGTTGAGTTTCTAAATATTTATTTATTCTAACAAAAAGCAATTACTACAAATGGATGACACATTTAATGAACACAATTTTATTTTTTTTCTGTAACTGTGCTTGTTGAATGTCAATCATATTTAAAGGGAATGACTTTGAAGTAAAACCTTTTTTCTTGCTACTGAAAAAAATGGAGTTGTTTTGGGTGGTAAAGTGTTAAGGAATAGGGACAGCTGGTCACACAAGGAACTCTTGAAGGCCACATGTGAAAACCTGTCACTTGCACAGAGGCCAGTCCCACTAAGGTGACCAGAGTGGGCTCCAAGCACAAACTGCCATTGgctatagatgggactgtgtccccccaaaattcatgtgttggagccttaaccctcaatgtgatggtatttgagatggggcctttggtaagggaagtttagatgaggtcacgagggtaggaccctcatgatgggatgagtccccttacaagacctcTGGCTTGggccgggcgtggtggctcacacctgtaatcccaacactttgggaggccaaggcaggtagatcacttgatgccaggagttccagaccaggctggccgacatggtgaaaccccatctctactaaaaaatataaaaattagccgggctttgtggcatgtgcctgtaatcccagctatttggcaggctgaggcatgagaatcgcttgaacccaggaggtggaggttacagtgagctgagagtgccccactgcactccagcctgggtgacagagcgagactttgtcccaaaacaaaaTAGGTGAGGGGATAGCGAATGCACTCAGGGTCAGCAGTGGAGTTTAAAAATTGTCTCTTTTCAACTTATTTAAATGACAGCACCTGAGAAGAGGAACCGTTTTACACTGGATGTTTCTCATGTAGAACAAGAAATCTTTCTGGAATTGATGTTTACATGTCTGTTGTTGGTCATCTCTCCTGTGTCTTAAATACTTTAATGTTGGAAGAGCATAGTGTTTGGGCTAGTGGGTTTCTGACAGCCCATGGGAATGCCCTGAAACTACTGTATCTGATGTTTGTTTTCGATGAGGTTCCATGTTTTGTTTTCTTGGGAATAAATTAATATATTGTTTTCC</dnaseq>| | sequence = <dnaseq>GTTAAACTGCGTTTACCTTAAACAGGCTTACTGTGTTCACTGCTGGACGCCTCTGGGCAATCTTACCCTCCTGGGAACTGAGAGAGACAATGCTAGGAGCCAGAAACATGAGGAATACATGAGCTCGGCGCCAATGGAACATGCTTTCACACCGGGTGCAGCTAACCACCACATCATACAAAACTCGTCGCTGACGTTTTAGATGTATAATCTGATTGGCATGGACTCACAGAGGAGGGAGTAAGGGAAGAGTAAGAAGATTTCAAAGGAGAGACACAGGTTGCAGGTTAGCAGGAGAACAGGCAAGCCAAATGCAAAGGAGCCACTTCAGAAATGTGTCACAGAAAAGTGAAAATGCAACCTAGTGGTAAGTGAAGAGGGGAAGAAGAAAGAAAAAGGACCAGAACCGTGAACTGAAGGGACAGGGAACAGCCAGACGAGAGCTTCAGCCATCACGAGGATGATTTCGGAACCTGGAGAAAATGTGTTCCTGGCTCTATGCCAAATGCATCCTGGACTGGAAACCTCAGAGCTATAAAGTGGAGTGACATGGAAGACAGACACGGAGGCTGCCACGGCCACTATGTACATGGTATTTGTATCTATGGAAACGGAGACTTAAAGTGGCTGGTTAATTCACCAAGCCTGTTTGCTAACAAGTTTGAGCTTAATACCTACCCCCTTACTGTGGAATGCCTAGAACTGAGGCATCGCGAAAGAACCCTCAATCAGAGTGAAACTGCGATACAACCCAGCTGGTATTTTTGAGCTATTCATGAGCTACTCATGACTGAAGGGAAACTGCAGCTGGGAAGAGGAGCCTGTTTTTGTGAGAGACTTTTGCCTTCGTAATGTTAACCGTTTCAGGACCACGTTTATAGCTTCAGGACCTGGCTACGTAATTATACTTAAAATATCCACTGGACACTGTGAAATACACTAACAGGATGGCTGGGTAGAGCAATCTGGGCACTTTGGCCAATTTTAGTCTTGCTGTTTCTTGATGCTCACCTCTATATTAGTTTATTGTTAGGATCAATGATAAATTTAAATGACCTCAGATCTTTGCACCAGATACTCATCATATACAAATGTTTTAGTAAAAAAGAGAATTGTAGATAATACTGTCTAGGAAAATAAGAATTAGGTTTCTTTGAAGAAGGAATCTTTTATAACACCTTAACAGTCACCACTGTGCTCAACCAGACAGATAGTGAAACAGCTTTCTGGGTAATTCACCAATTTCCTTTAAAACATAAGCTACCTGAATGGAGAATACATCTTGTTTCTGAGTTTCAACACTAGCATTTTTGGCTTACTCATGGACAAAGTTCTGTATATAGTATAAAGTCATTAACAAGAAACAGGATATGCTTTAAGACAGAATTCACTGTCTGTTGCTTCAGTAAAAGGACCTCGGGGAATAAAACATTTCTCTCTTATATGCCAGAATGTAGGCTGGTCCCTATGTCATGTCTTCCATTAAGAACACTAAAAAGTCCTTGCAAGAATGGAGATATGCATTCAAGAGAGGTGCTATCACATAGATCTAGTCTGAAGTCTGGAACACTTTCCTCTTCTATGACCCCTCTCTCCCCAGTATTATCTTACTTGCAAAATGGAGACCAAATTCTATCCTGTGAGGCTTTTAATTGCACCATAGTATGCTCTGAGTAGCTTTACACTGCCTGGTACTGATAGTAGTGGCTCGATTTTTAAGAGCCTTCAATTGTAGATGAACATCTCTGTTATTTATCCCtcattcatccatccgttcattcattcaGCCTTCAATCAACATCTCTTGAGTGTCTATTATGTACAGGACATGTACTGAGACAAAAAGGAAACATAAGAGCTTTTTCACTCTAAAAATCTTGGCAATAATGTCAACACCAGAAAGCCTCCTCTGGAGAATCTTACAGAGTGATTGTAGTTTAATACAGGAACACACAGGGCTGTGTAGCATGATACCAGGCCCAGGAGATCAGTAATTACAAATTAAGGGTTAAATCAGAGATTATTCAACAGAGAGGGAGAAAGGAGGAGACAGAGGgaggacctgttgtgttccagccattctggtattcctttatgtatctaatttcattcaaacctcacaacagtcttgtgaggcccttatataattactcccattttgcagatgaagtaactgaggcttagaaaggttaaTAGCACCGGGGAACAATTTCTCTGGGTGAGAATTGGGACTCTGTTGCTGGTCTTCTCAGTTCATTTCCTGAGGTGGATTTACTGAGAGAAGGTGAAATAAAGCCATATTTAGTATACCAGAGAAGGTAGATTTTAAGAATGGTCTCAGTGTTAATACTGAGAAAAAGTCCTGTCAGTTCAGAAAAAATGTGAAGTCTACTTTAGTATTCCTGTAATACTAAACCGTTGAGTTTCTAAATATTTATTTATTCTAACAAAAAGCAATTACTACAAATGGATGACACATTTAATGAACACAATTTTATTTTTTTTCTGTAACTGTGCTTGTTGAATGTCAATCATATTTAAAGGGAATGACTTTGAAGTAAAACCTTTTTTCTTGCTACTGAAAAAAATGGAGTTGTTTTGGGTGGTAAAGTGTTAAGGAATAGGGACAGCTGGTCACACAAGGAACTCTTGAAGGCCACATGTGAAAACCTGTCACTTGCACAGAGGCCAGTCCCACTAAGGTGACCAGAGTGGGCTCCAAGCACAAACTGCCATTGgctatagatgggactgtgtccccccaaaattcatgtgttggagccttaaccctcaatgtgatggtatttgagatggggcctttggtaagggaagtttagatgaggtcacgagggtaggaccctcatgatgggatgagtccccttacaagacctcTGGCTTGggccgggcgtggtggctcacacctgtaatcccaacactttgggaggccaaggcaggtagatcacttgatgccaggagttccagaccaggctggccgacatggtgaaaccccatctctactaaaaaatataaaaattagccgggctttgtggcatgtgcctgtaatcccagctatttggcaggctgaggcatgagaatcgcttgaacccaggaggtggaggttacagtgagctgagagtgccccactgcactccagcctgggtgacagagcgagactttgtcccaaaacaaaaTAGGTGAGGGGATAGCGAATGCACTCAGGGTCAGCAGTGGAGTTTAAAAATTGTCTCTTTTCAACTTATTTAAATGACAGCACCTGAGAAGAGGAACCGTTTTACACTGGATGTTTCTCATGTAGAACAAGAAATCTTTCTGGAATTGATGTTTACATGTCTGTTGTTGGTCATCTCTCCTGTGTCTTAAATACTTTAATGTTGGAAGAGCATAGTGTTTGGGCTAGTGGGTTTCTGACAGCCCATGGGAATGCCCTGAAACTACTGTATCTGATGTTTGTTTTCGATGAGGTTCCATGTTTTGTTTTCTTGGGAATAAATTAATATATTGTTTTCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG042994]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 01:44, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107698 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3528 nt |
Genomic location |
chr6+:10521565..10629600 |
Exon number |
5 |
Exons |
10521565..10521650,10527707..10527893,10528864..10529074,10621584..10621676,10626650..10629600 |
Genome context |
|
Sequence |
000001 GTTAAACTGC GTTTACCTTA AACAGGCTTA CTGTGTTCAC TGCTGGACGC CTCTGGGCAA TCTTACCCTC CTGGGAACTG 000080
000081 AGAGAGACAA TGCTAGGAGC CAGAAACATG AGGAATACAT GAGCTCGGCG CCAATGGAAC ATGCTTTCAC ACCGGGTGCA 000160 000161 GCTAACCACC ACATCATACA AAACTCGTCG CTGACGTTTT AGATGTATAA TCTGATTGGC ATGGACTCAC AGAGGAGGGA 000240 000241 GTAAGGGAAG AGTAAGAAGA TTTCAAAGGA GAGACACAGG TTGCAGGTTA GCAGGAGAAC AGGCAAGCCA AATGCAAAGG 000320 000321 AGCCACTTCA GAAATGTGTC ACAGAAAAGT GAAAATGCAA CCTAGTGGTA AGTGAAGAGG GGAAGAAGAA AGAAAAAGGA 000400 000401 CCAGAACCGT GAACTGAAGG GACAGGGAAC AGCCAGACGA GAGCTTCAGC CATCACGAGG ATGATTTCGG AACCTGGAGA 000480 000481 AAATGTGTTC CTGGCTCTAT GCCAAATGCA TCCTGGACTG GAAACCTCAG AGCTATAAAG TGGAGTGACA TGGAAGACAG 000560 000561 ACACGGAGGC TGCCACGGCC ACTATGTACA TGGTATTTGT ATCTATGGAA ACGGAGACTT AAAGTGGCTG GTTAATTCAC 000640 000641 CAAGCCTGTT TGCTAACAAG TTTGAGCTTA ATACCTACCC CCTTACTGTG GAATGCCTAG AACTGAGGCA TCGCGAAAGA 000720 000721 ACCCTCAATC AGAGTGAAAC TGCGATACAA CCCAGCTGGT ATTTTTGAGC TATTCATGAG CTACTCATGA CTGAAGGGAA 000800 000801 ACTGCAGCTG GGAAGAGGAG CCTGTTTTTG TGAGAGACTT TTGCCTTCGT AATGTTAACC GTTTCAGGAC CACGTTTATA 000880 000881 GCTTCAGGAC CTGGCTACGT AATTATACTT AAAATATCCA CTGGACACTG TGAAATACAC TAACAGGATG GCTGGGTAGA 000960 000961 GCAATCTGGG CACTTTGGCC AATTTTAGTC TTGCTGTTTC TTGATGCTCA CCTCTATATT AGTTTATTGT TAGGATCAAT 001040 001041 GATAAATTTA AATGACCTCA GATCTTTGCA CCAGATACTC ATCATATACA AATGTTTTAG TAAAAAAGAG AATTGTAGAT 001120 001121 AATACTGTCT AGGAAAATAA GAATTAGGTT TCTTTGAAGA AGGAATCTTT TATAACACCT TAACAGTCAC CACTGTGCTC 001200 001201 AACCAGACAG ATAGTGAAAC AGCTTTCTGG GTAATTCACC AATTTCCTTT AAAACATAAG CTACCTGAAT GGAGAATACA 001280 001281 TCTTGTTTCT GAGTTTCAAC ACTAGCATTT TTGGCTTACT CATGGACAAA GTTCTGTATA TAGTATAAAG TCATTAACAA 001360 001361 GAAACAGGAT ATGCTTTAAG ACAGAATTCA CTGTCTGTTG CTTCAGTAAA AGGACCTCGG GGAATAAAAC ATTTCTCTCT 001440 001441 TATATGCCAG AATGTAGGCT GGTCCCTATG TCATGTCTTC CATTAAGAAC ACTAAAAAGT CCTTGCAAGA ATGGAGATAT 001520 001521 GCATTCAAGA GAGGTGCTAT CACATAGATC TAGTCTGAAG TCTGGAACAC TTTCCTCTTC TATGACCCCT CTCTCCCCAG 001600 001601 TATTATCTTA CTTGCAAAAT GGAGACCAAA TTCTATCCTG TGAGGCTTTT AATTGCACCA TAGTATGCTC TGAGTAGCTT 001680 001681 TACACTGCCT GGTACTGATA GTAGTGGCTC GATTTTTAAG AGCCTTCAAT TGTAGATGAA CATCTCTGTT ATTTATCCCt 001760 001761 cattcatcca tccgttcatt cattcaGCCT TCAATCAACA TCTCTTGAGT GTCTATTATG TACAGGACAT GTACTGAGAC 001840 001841 AAAAAGGAAA CATAAGAGCT TTTTCACTCT AAAAATCTTG GCAATAATGT CAACACCAGA AAGCCTCCTC TGGAGAATCT 001920 001921 TACAGAGTGA TTGTAGTTTA ATACAGGAAC ACACAGGGCT GTGTAGCATG ATACCAGGCC CAGGAGATCA GTAATTACAA 002000 002001 ATTAAGGGTT AAATCAGAGA TTATTCAACA GAGAGGGAGA AAGGAGGAGA CAGAGGgagg acctgttgtg ttccagccat 002080 002081 tctggtattc ctttatgtat ctaatttcat tcaaacctca caacagtctt gtgaggccct tatataatta ctcccatttt 002160 002161 gcagatgaag taactgaggc ttagaaaggt taaTAGCACC GGGGAACAAT TTCTCTGGGT GAGAATTGGG ACTCTGTTGC 002240 002241 TGGTCTTCTC AGTTCATTTC CTGAGGTGGA TTTACTGAGA GAAGGTGAAA TAAAGCCATA TTTAGTATAC CAGAGAAGGT 002320 002321 AGATTTTAAG AATGGTCTCA GTGTTAATAC TGAGAAAAAG TCCTGTCAGT TCAGAAAAAA TGTGAAGTCT ACTTTAGTAT 002400 002401 TCCTGTAATA CTAAACCGTT GAGTTTCTAA ATATTTATTT ATTCTAACAA AAAGCAATTA CTACAAATGG ATGACACATT 002480 002481 TAATGAACAC AATTTTATTT TTTTTCTGTA ACTGTGCTTG TTGAATGTCA ATCATATTTA AAGGGAATGA CTTTGAAGTA 002560 002561 AAACCTTTTT TCTTGCTACT GAAAAAAATG GAGTTGTTTT GGGTGGTAAA GTGTTAAGGA ATAGGGACAG CTGGTCACAC 002640 002641 AAGGAACTCT TGAAGGCCAC ATGTGAAAAC CTGTCACTTG CACAGAGGCC AGTCCCACTA AGGTGACCAG AGTGGGCTCC 002720 002721 AAGCACAAAC TGCCATTGgc tatagatggg actgtgtccc cccaaaattc atgtgttgga gccttaaccc tcaatgtgat 002800 002801 ggtatttgag atggggcctt tggtaaggga agtttagatg aggtcacgag ggtaggaccc tcatgatggg atgagtcccc 002880 002881 ttacaagacc tcTGGCTTGg gccgggcgtg gtggctcaca cctgtaatcc caacactttg ggaggccaag gcaggtagat 002960 002961 cacttgatgc caggagttcc agaccaggct ggccgacatg gtgaaacccc atctctacta aaaaatataa aaattagccg 003040 003041 ggctttgtgg catgtgcctg taatcccagc tatttggcag gctgaggcat gagaatcgct tgaacccagg aggtggaggt 003120 003121 tacagtgagc tgagagtgcc ccactgcact ccagcctggg tgacagagcg agactttgtc ccaaaacaaa aTAGGTGAGG 003200 003201 GGATAGCGAA TGCACTCAGG GTCAGCAGTG GAGTTTAAAA ATTGTCTCTT TTCAACTTAT TTAAATGACA GCACCTGAGA 003280 003281 AGAGGAACCG TTTTACACTG GATGTTTCTC ATGTAGAACA AGAAATCTTT CTGGAATTGA TGTTTACATG TCTGTTGTTG 003360 003361 GTCATCTCTC CTGTGTCTTA AATACTTTAA TGTTGGAAGA GCATAGTGTT TGGGCTAGTG GGTTTCTGAC AGCCCATGGG 003440 003441 AATGCCCTGA AACTACTGTA TCTGATGTTT GTTTTCGATG AGGTTCCATG TTTTGTTTTC TTGGGAATAA ATTAATATAT 003520 003521 TGTTTTCC |
Predicted Small Protein
Name | NONHSAT107698_smProtein_1817:1993 |
Length | 59 |
Molecular weight | 6642.7478 |
Aromaticity | 0.0689655172414 |
Instability index | 63.2862068966 |
Isoelectric point | 8.59088134766 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0310417369241 |
Amino acid sequence | MYRTCTETKRKHKSFFTLKILAIMSTPESLLWRILQSDCSLIQEHTGLCSMIPGPGDQ |
Secondary structure | LLLLLLLLLLLLLLEEELEELEELLLLHHHHHHHHHLLLHHHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |