Difference between revisions of "NONHSAT112721"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
(One intermediate revision by one other user not shown)
Line 42: Line 42:
 
sequence = <dnaseq>TACAGCTCCCTCCAGCCCTTCTGAGTCTAAAACACATTCCAATTCCTCTGTTTTCCAGGCTTATTTTGCCATCAGTAACTCCTTCCTGTTCCCCCAGCCATGAGTGAATATGCTGAATGAGGACCTTTTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTTGACACCTGCTTGACCAGGATTTGGATAAAAGGAGAATTTCTGCAGGAAAATAACTCTTAGAAAAGAAACTTAGGAATACAGAGTAAGCATTTCTTCCTGGAAGCCTTGTGTGAGAGACATAAAGACAGTCTCAGATTCTTACTCACAAGCAGTCAAAGGCTGCACCTCTGAAATAAAAAGGGACACACAGATGTAAGGAGTTAGTCCTTGCTCCAGAGGATTTGACAGAGTGGCTGATGTCAAGGAGAACAAGGATGCAGAAGAAACTCAAGATGTATGTATTAAAACAAAAGAACAATAACCTGAAGGGACCATGATTCTGTTATTGTATATAACACAAGGAAATGCCCCAGATTCTCCTTTAAAAGATATAATGTACATATTAA</dnaseq>|
 
sequence = <dnaseq>TACAGCTCCCTCCAGCCCTTCTGAGTCTAAAACACATTCCAATTCCTCTGTTTTCCAGGCTTATTTTGCCATCAGTAACTCCTTCCTGTTCCCCCAGCCATGAGTGAATATGCTGAATGAGGACCTTTTACTGTAAGGAGTTCTTCTCTCAATGTGTGACCTGCCCTGTCTATCACCAGTGGGTATCTGAGCTTAAGGCCTCTGTAATGAGATGTGAAAAGAGAGAATTGATGTCCCTGACTAACAGCATCAGACCTTTTGACACCTGCTTGACCAGGATTTGGATAAAAGGAGAATTTCTGCAGGAAAATAACTCTTAGAAAAGAAACTTAGGAATACAGAGTAAGCATTTCTTCCTGGAAGCCTTGTGTGAGAGACATAAAGACAGTCTCAGATTCTTACTCACAAGCAGTCAAAGGCTGCACCTCTGAAATAAAAAGGGACACACAGATGTAAGGAGTTAGTCCTTGCTCCAGAGGATTTGACAGAGTGGCTGATGTCAAGGAGAACAAGGATGCAGAAGAAACTCAAGATGTATGTATTAAAACAAAAGAACAATAACCTGAAGGGACCATGATTCTGTTATTGTATATAACACAAGGAAATGCCCCAGATTCTCCTTTAAAAGATATAATGTACATATTAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG043757]][[Category:Transcripts]]

Latest revision as of 01:52, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT112721

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

646 nt

Genomic location

chr6+:41107390..41108503

Exon number

3

Exons

41107390..41107517,41107594..41107943,41108336..41108503

Genome context

Sequence
000001 TACAGCTCCC TCCAGCCCTT CTGAGTCTAA AACACATTCC AATTCCTCTG TTTTCCAGGC TTATTTTGCC ATCAGTAACT 000080
000081 CCTTCCTGTT CCCCCAGCCA TGAGTGAATA TGCTGAATGA GGACCTTTTA CTGTAAGGAG TTCTTCTCTC AATGTGTGAC 000160
000161 CTGCCCTGTC TATCACCAGT GGGTATCTGA GCTTAAGGCC TCTGTAATGA GATGTGAAAA GAGAGAATTG ATGTCCCTGA 000240
000241 CTAACAGCAT CAGACCTTTT GACACCTGCT TGACCAGGAT TTGGATAAAA GGAGAATTTC TGCAGGAAAA TAACTCTTAG 000320
000321 AAAAGAAACT TAGGAATACA GAGTAAGCAT TTCTTCCTGG AAGCCTTGTG TGAGAGACAT AAAGACAGTC TCAGATTCTT 000400
000401 ACTCACAAGC AGTCAAAGGC TGCACCTCTG AAATAAAAAG GGACACACAG ATGTAAGGAG TTAGTCCTTG CTCCAGAGGA 000480
000481 TTTGACAGAG TGGCTGATGT CAAGGAGAAC AAGGATGCAG AAGAAACTCA AGATGTATGT ATTAAAACAA AAGAACAATA 000560
000561 ACCTGAAGGG ACCATGATTC TGTTATTGTA TATAACACAA GGAAATGCCC CAGATTCTCC TTTAAAAGAT ATAATGTACA 000640
000641 TATTAA
[back to top]

Predicted Small Protein

Name NONHSAT112721_smProtein_116:319
Length 68
Molecular weight 8061.3045
Aromaticity 0.134328358209
Instability index 41.953880597
Isoelectric point 8.35028076172
Runs 12
Runs residual 0.0357896381965
Runs probability 0.0485706294531
Amino acid sequence MRTFYCKEFFSQCVTCPVYHQWVSELKASVMRCEKRELMSLTNSIRPFDTCLTRIWIKGE
FLQENNS
Secondary structure LLEEEHHHHHLLEELLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLEEEEEEELL
EELLLLL
PRMN -
PiMo -