Difference between revisions of "NONHSAT113980"
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==Annotated Information==
===Transcriptomic Nomeclature===
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sequence = <dnaseq>CCAAACAAAGACCACACTGTTGACAGCGTTGGGTTCCAGTAGCGGTAAACTACCAAGGGGCTGGTTTACAGAAAATGAGTTTGCTCTGTGATGTCATACAAGTTTGCTTTGTCCTGACGCCAACATGACACTGAGGCAGCAGAGGAGGGAGAACAGGAAAATTGGAACCGTACTCTTAGTTAATGGTTTCCAGAGATTATTTAGCAGGACTTGAACAGAGGGAGGAAAATATTGTGAAGGATTGCTGCGAGGTGTACCATAATTGCGTGCAGCTGTCTGCTTCAGAAAGTGAGGGCTCCAGGAATGAGGAGAATCTTCAAGAACTTCCTCGCACTGTGACATGTCTGATCCCTTGCTCCCATCCCTGCAGCATGAACAAGGTGGACACTCACTGACCTGTCACAAGGTTGCCCCACAAAACTTTGGGGTCCATGTC</dnaseq>| | sequence = <dnaseq>CCAAACAAAGACCACACTGTTGACAGCGTTGGGTTCCAGTAGCGGTAAACTACCAAGGGGCTGGTTTACAGAAAATGAGTTTGCTCTGTGATGTCATACAAGTTTGCTTTGTCCTGACGCCAACATGACACTGAGGCAGCAGAGGAGGGAGAACAGGAAAATTGGAACCGTACTCTTAGTTAATGGTTTCCAGAGATTATTTAGCAGGACTTGAACAGAGGGAGGAAAATATTGTGAAGGATTGCTGCGAGGTGTACCATAATTGCGTGCAGCTGTCTGCTTCAGAAAGTGAGGGCTCCAGGAATGAGGAGAATCTTCAAGAACTTCCTCGCACTGTGACATGTCTGATCCCTTGCTCCCATCCCTGCAGCATGAACAAGGTGGACACTCACTGACCTGTCACAAGGTTGCCCCACAAAACTTTGGGGTCCATGTC</dnaseq>| | ||
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| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG044354]][[Category:Transcripts]] |
Latest revision as of 01:57, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT113980 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
436 nt |
| Genomic location |
chr6-:90798773..90927964 |
| Exon number |
3 |
| Exons |
90798773..90798828,90916288..90916400,90927698..90927964 |
| Genome context |
|
| Sequence |
000001 CCAAACAAAG ACCACACTGT TGACAGCGTT GGGTTCCAGT AGCGGTAAAC TACCAAGGGG CTGGTTTACA GAAAATGAGT 000080
000081 TTGCTCTGTG ATGTCATACA AGTTTGCTTT GTCCTGACGC CAACATGACA CTGAGGCAGC AGAGGAGGGA GAACAGGAAA 000160 000161 ATTGGAACCG TACTCTTAGT TAATGGTTTC CAGAGATTAT TTAGCAGGAC TTGAACAGAG GGAGGAAAAT ATTGTGAAGG 000240 000241 ATTGCTGCGA GGTGTACCAT AATTGCGTGC AGCTGTCTGC TTCAGAAAGT GAGGGCTCCA GGAATGAGGA GAATCTTCAA 000320 000321 GAACTTCCTC GCACTGTGAC ATGTCTGATC CCTTGCTCCC ATCCCTGCAG CATGAACAAG GTGGACACTC ACTGACCTGT 000400 000401 CACAAGGTTG CCCCACAAAA CTTTGGGGTC CATGTC |
Predicted Small Protein
| Name | NONHSAT113980_smProtein_182:394 |
| Length | 71 |
| Molecular weight | 7940.8088 |
| Aromaticity | 0.0285714285714 |
| Instability index | 50.1957142857 |
| Isoelectric point | 4.81597900391 |
| Runs | 11 |
| Runs residual | 0.0123055162659 |
| Runs probability | 0.0260795554913 |
| Amino acid sequence | MVSRDYLAGLEQREENIVKDCCEVYHNCVQLSASESEGSRNEENLQELPRTVTCLIPCSH PCSMNKVDTH |
| Secondary structure | LLLHHHHLLHHHHHHHHHHHHHHHHLLEEEEEELLLLLLLLHHHHHHLLLEEEEEELLLL LLLLLLLLLL |
| PRMN | - |
| PiMo | - |
