Difference between revisions of "NONHSAT117349"

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sequence = <dnaseq>CACTATATCGGTCTGTCATCATCCCTTGGCCTCTCACCTGATGCAGCCAGTCCAGGGACAGAATGGGGATTCCCCGCCCCAGGGCACACAGGAACTTGACTGTCCGGCGGATGCGATCAGTGACCAGACACCTGATGCTTCTTTATATGTATAATGGCTGACCCTGGCGGGACTTCCTTCTCCACTTGTGTGTTGATGTCCACTGTGGTGGAGGCTTGGCTTCTCTCCAGGTGGATCCCAGATGTGCCAAAGTCAGCGCTGCTGAGACTTCTTCCTCGTCATCTGTATCGCTGTTGATAACCATGGAAGCTTGGCTTTTCTCCAGAGGGACAGCCTGTGGGGCCTTGCCTTCTTCCACATCTGTATCACTACCAGCCTGGCTCTCCTGCAGATGGGCCAGGCCTGGTGCTCCAGGACCCCTTGTACCTACTCCATGGAAGATCTTCCTCTTCTTCATAGGAATGACAACTGGGGTTGCTGGGATCCTCTCTTCTTCCGCATCAGTGTCGCTGTCGATGAAGCCAAAAGGCTGAGCCCTTTCCAAATGGACCTCAGCTGGCCTTCCAGGAGGCCTGCTGTCATCATCCACATCTGTGTCACTGTCCTCTCCAGGAGGTTGGCTCCTCTCCAGAATCACCCCAGCTGGAACCACCCCATTCCCTGCACCCCTCTTGACTTTTGTATCATTGTCCCTCTCCTTCACTAAAGGCTGATCCTTTTCAAGCTGGATTTCAGTTA</dnaseq>|
 
sequence = <dnaseq>CACTATATCGGTCTGTCATCATCCCTTGGCCTCTCACCTGATGCAGCCAGTCCAGGGACAGAATGGGGATTCCCCGCCCCAGGGCACACAGGAACTTGACTGTCCGGCGGATGCGATCAGTGACCAGACACCTGATGCTTCTTTATATGTATAATGGCTGACCCTGGCGGGACTTCCTTCTCCACTTGTGTGTTGATGTCCACTGTGGTGGAGGCTTGGCTTCTCTCCAGGTGGATCCCAGATGTGCCAAAGTCAGCGCTGCTGAGACTTCTTCCTCGTCATCTGTATCGCTGTTGATAACCATGGAAGCTTGGCTTTTCTCCAGAGGGACAGCCTGTGGGGCCTTGCCTTCTTCCACATCTGTATCACTACCAGCCTGGCTCTCCTGCAGATGGGCCAGGCCTGGTGCTCCAGGACCCCTTGTACCTACTCCATGGAAGATCTTCCTCTTCTTCATAGGAATGACAACTGGGGTTGCTGGGATCCTCTCTTCTTCCGCATCAGTGTCGCTGTCGATGAAGCCAAAAGGCTGAGCCCTTTCCAAATGGACCTCAGCTGGCCTTCCAGGAGGCCTGCTGTCATCATCCACATCTGTGTCACTGTCCTCTCCAGGAGGTTGGCTCCTCTCCAGAATCACCCCAGCTGGAACCACCCCATTCCCTGCACCCCTCTTGACTTTTGTATCATTGTCCCTCTCCTTCACTAAAGGCTGATCCTTTTCAAGCTGGATTTCAGTTA</dnaseq>|
 
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[[Category:Antisense]]
+
[[Category:Antisense]][[Category:NONHSAG046074]][[Category:Transcripts]]

Latest revision as of 06:17, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT117349

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

738 nt

Genomic location

chr6_mann_hap4+:2018939..2029055

Exon number

3

Exons

2018939..2019065,2028183..2028296,2028559..2029055

Genome context

Sequence
000001 CACTATATCG GTCTGTCATC ATCCCTTGGC CTCTCACCTG ATGCAGCCAG TCCAGGGACA GAATGGGGAT TCCCCGCCCC 000080
000081 AGGGCACACA GGAACTTGAC TGTCCGGCGG ATGCGATCAG TGACCAGACA CCTGATGCTT CTTTATATGT ATAATGGCTG 000160
000161 ACCCTGGCGG GACTTCCTTC TCCACTTGTG TGTTGATGTC CACTGTGGTG GAGGCTTGGC TTCTCTCCAG GTGGATCCCA 000240
000241 GATGTGCCAA AGTCAGCGCT GCTGAGACTT CTTCCTCGTC ATCTGTATCG CTGTTGATAA CCATGGAAGC TTGGCTTTTC 000320
000321 TCCAGAGGGA CAGCCTGTGG GGCCTTGCCT TCTTCCACAT CTGTATCACT ACCAGCCTGG CTCTCCTGCA GATGGGCCAG 000400
000401 GCCTGGTGCT CCAGGACCCC TTGTACCTAC TCCATGGAAG ATCTTCCTCT TCTTCATAGG AATGACAACT GGGGTTGCTG 000480
000481 GGATCCTCTC TTCTTCCGCA TCAGTGTCGC TGTCGATGAA GCCAAAAGGC TGAGCCCTTT CCAAATGGAC CTCAGCTGGC 000560
000561 CTTCCAGGAG GCCTGCTGTC ATCATCCACA TCTGTGTCAC TGTCCTCTCC AGGAGGTTGG CTCCTCTCCA GAATCACCCC 000640
000641 AGCTGGAACC ACCCCATTCC CTGCACCCCT CTTGACTTTT GTATCATTGT CCCTCTCCTT CACTAAAGGC TGATCCTTTT 000720
000721 CAAGCTGGAT TTCAGTTA
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Predicted Small Protein

Name NONHSAT117349_smProtein_302:532
Length 77
Molecular weight 7927.2718
Aromaticity 0.105263157895
Instability index 48.4697368421
Isoelectric point 10.3208618164
Runs 14
Runs residual 0.0428009679371
Runs probability 0.0466033260151
Amino acid sequence MEAWLFSRGTACGALPSSTSVSLPAWLSCRWARPGAPGPLVPTPWKIFLFFIGMTTGVAG
ILSSSASVSLSMKPKG
Secondary structure LEEEEELLLEELLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLEEEEEEELLLLLHHH
EEELLLEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
HHLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT
TTiiiiiiiiiiiiii