Difference between revisions of "NONHSAT117913"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>CACAAAGCTACTAAGTTTGACTTTCGCAGACAATGTATCTGTGACTCCCGCTTGTCTTTTACATTTACCTTCATTCCACAGCCCTGAGTTACTGGGTGAGTCCAAGACATCTCCTCAATATAAAGTAGCACACTGCGTTACTATATGTTGCAACCGGGAGCCAGTACAGACTTTATTCACCTCACAGTTGCAAGTGTTCAATGCAGTCACAATGCCCCTCAGCAGTGCTCATGTGCTGCCTGTTTTTAGGAAGTATTCACATCTAAGTGGTGTGTATATCTTATAGGAACACTTAGTATTTTTAAAACCTGATTAATTAAAAAAAATTAGTTTCTAGGCAGTCCCAAATATAGTATTAAAGGCCAACTGCAAAGAAGGAACACTAAGTATTTTTTAAACCTTATTAACATAAAAAACATTAGTTTTTAGGCAGTCCTACATTAGGTATTAAAGGCCAACTGCAAAGAACACTGAGCGAGGCTCTGTAGATGGATGTAATAAAAATCTATAAAACAATGTGTTTAAACCTAAGAATTCTACTGCTTTCCAATTCCTTCCCTCTGCTCCTTTTCCTCACCTCCTGCTTCTCCAGCCCTTCCCTCTGTCCCTTTCATCCCTCAGGCCCTCCTCTCCCCTTAGTCCCCACCACCCTGTCACTTCTAAATTGTGGCTCTAGCATTGTCCCATTACCTGCTACGTGActgttctctccacagtggtcctgctcctgtgagtcagagtgtgtcatttcctcacctaaaacactccagtggctccacctcGGTCTTGTGAAGCTTCTAGAATGTCAGGCACGTGAGCATATGAGGGCATacctggttcatcttaggcactaaatttttgttgactgaatgaatGAAATATGAATGTATTAAATTGCATCACAGAAAGTTATAAAATGTAAAACACTGAAAAATTAAGAAATATTTTATTTTGTGTAACTAGTGTGCATATCAATTCATTCCGAGTCTGTTCAGCCTGtgtatgaattttataagattgcataacaaattatcacaaacattgactttaaacaacaccc</dnaseq>| | sequence = <dnaseq>CACAAAGCTACTAAGTTTGACTTTCGCAGACAATGTATCTGTGACTCCCGCTTGTCTTTTACATTTACCTTCATTCCACAGCCCTGAGTTACTGGGTGAGTCCAAGACATCTCCTCAATATAAAGTAGCACACTGCGTTACTATATGTTGCAACCGGGAGCCAGTACAGACTTTATTCACCTCACAGTTGCAAGTGTTCAATGCAGTCACAATGCCCCTCAGCAGTGCTCATGTGCTGCCTGTTTTTAGGAAGTATTCACATCTAAGTGGTGTGTATATCTTATAGGAACACTTAGTATTTTTAAAACCTGATTAATTAAAAAAAATTAGTTTCTAGGCAGTCCCAAATATAGTATTAAAGGCCAACTGCAAAGAAGGAACACTAAGTATTTTTTAAACCTTATTAACATAAAAAACATTAGTTTTTAGGCAGTCCTACATTAGGTATTAAAGGCCAACTGCAAAGAACACTGAGCGAGGCTCTGTAGATGGATGTAATAAAAATCTATAAAACAATGTGTTTAAACCTAAGAATTCTACTGCTTTCCAATTCCTTCCCTCTGCTCCTTTTCCTCACCTCCTGCTTCTCCAGCCCTTCCCTCTGTCCCTTTCATCCCTCAGGCCCTCCTCTCCCCTTAGTCCCCACCACCCTGTCACTTCTAAATTGTGGCTCTAGCATTGTCCCATTACCTGCTACGTGActgttctctccacagtggtcctgctcctgtgagtcagagtgtgtcatttcctcacctaaaacactccagtggctccacctcGGTCTTGTGAAGCTTCTAGAATGTCAGGCACGTGAGCATATGAGGGCATacctggttcatcttaggcactaaatttttgttgactgaatgaatGAAATATGAATGTATTAAATTGCATCACAGAAAGTTATAAAATGTAAAACACTGAAAAATTAAGAAATATTTTATTTTGTGTAACTAGTGTGCATATCAATTCATTCCGAGTCTGTTCAGCCTGtgtatgaattttataagattgcataacaaattatcacaaacattgactttaaacaacaccc</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG046372]][[Category:Transcripts]] |
Latest revision as of 06:21, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT117913 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1060 nt |
| Genomic location |
chr6_qbl_hap6-:1187016..1188075 |
| Exon number |
1 |
| Exons |
1187016..1188075 |
| Genome context |
|
| Sequence |
000001 CACAAAGCTA CTAAGTTTGA CTTTCGCAGA CAATGTATCT GTGACTCCCG CTTGTCTTTT ACATTTACCT TCATTCCACA 000080
000081 GCCCTGAGTT ACTGGGTGAG TCCAAGACAT CTCCTCAATA TAAAGTAGCA CACTGCGTTA CTATATGTTG CAACCGGGAG 000160 000161 CCAGTACAGA CTTTATTCAC CTCACAGTTG CAAGTGTTCA ATGCAGTCAC AATGCCCCTC AGCAGTGCTC ATGTGCTGCC 000240 000241 TGTTTTTAGG AAGTATTCAC ATCTAAGTGG TGTGTATATC TTATAGGAAC ACTTAGTATT TTTAAAACCT GATTAATTAA 000320 000321 AAAAAATTAG TTTCTAGGCA GTCCCAAATA TAGTATTAAA GGCCAACTGC AAAGAAGGAA CACTAAGTAT TTTTTAAACC 000400 000401 TTATTAACAT AAAAAACATT AGTTTTTAGG CAGTCCTACA TTAGGTATTA AAGGCCAACT GCAAAGAACA CTGAGCGAGG 000480 000481 CTCTGTAGAT GGATGTAATA AAAATCTATA AAACAATGTG TTTAAACCTA AGAATTCTAC TGCTTTCCAA TTCCTTCCCT 000560 000561 CTGCTCCTTT TCCTCACCTC CTGCTTCTCC AGCCCTTCCC TCTGTCCCTT TCATCCCTCA GGCCCTCCTC TCCCCTTAGT 000640 000641 CCCCACCACC CTGTCACTTC TAAATTGTGG CTCTAGCATT GTCCCATTAC CTGCTACGTG Actgttctct ccacagtggt 000720 000721 cctgctcctg tgagtcagag tgtgtcattt cctcacctaa aacactccag tggctccacc tcGGTCTTGT GAAGCTTCTA 000800 000801 GAATGTCAGG CACGTGAGCA TATGAGGGCA Tacctggttc atcttaggca ctaaattttt gttgactgaa tgaatGAAAT 000880 000881 ATGAATGTAT TAAATTGCAT CACAGAAAGT TATAAAATGT AAAACACTGA AAAATTAAGA AATATTTTAT TTTGTGTAAC 000960 000961 TAGTGTGCAT ATCAATTCAT TCCGAGTCTG TTCAGCCTGt gtatgaattt tataagattg cataacaaat tatcacaaac 001040 001041 attgacttta aacaacaccc |
Predicted Small Protein
| Name | NONHSAT117913_smProtein_488:700 |
| Length | 71 |
| Molecular weight | 7545.0821 |
| Aromaticity | 0.0714285714286 |
| Instability index | 60.3528571429 |
| Isoelectric point | 8.48992919922 |
| Runs | 9 |
| Runs residual | 0.0162659123055 |
| Runs probability | 0.0495004808731 |
| Amino acid sequence | MDVIKIYKTMCLNLRILLLSNSFPLLLFLTSCFSSPSLCPFHPSGPPLPLVPTTLSLLNC GSSIVPLPAT |
| Secondary structure | LLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHLL LLLEELLLLL |
| PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLL |
| PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooTTTTTTTTTTTTTT TTTTiiiiii |
