Difference between revisions of "NONHSAT118887"

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sequence = <dnaseq>GTTAGTCGGGAGGGGGCGCTGTACGCGCGCTGTACGCTTGCGCGAGGTGACGCCGGGGCAGGGCCGGAAGGAATGCAGCGGCTGCCACGGAGCTCGTAGCTGCAGCTTTGGAGGAGTAAGCGGCGTGGTAGCGAAGGTCGCCGAACCCGCCTGGCTAGCCGGCGAGTTGAGTGGCGACTCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCGTATGTGCATGTCTGCATTTGAAAATGGAAGAGGGAAACAACAATGAAGAGGTAATTCACTTGAACAACTTTCACTGCCATCGGGGACAAGACTTTGTAATTTTCTTCTGGAAAACCCAGATTATCCAAAGAGAGAAGACAGAATCATTATAAATCCCAGTAGCAGTCTGCTGGCCAGCCAAGATGAGACAAAGTTGCCTAAAATAAGACTTTTTTGACTATTCTAAATTGACTCCTCTTGACCAGCACTGCTTCATCCAAGCTGCTGACCTCCTCATGGCCGACTTCAAAGTGCTCAGTAGTCAGGACATCATGTGGGCCCTGCACGAGCTCAAAGGACACTATGCAATCACCCGAAAGGACTTTGAGAGTCATCAGCATATGGAAAATCTCACCAGCCAGGATGAGGTACCCAGAGATACCAGGCCTTTTCTGATGCCATTAAAAAATGGCAGGAGCTATCACCAGAAACCAGTGGAAAAAGGAAAAAGAGAAAAGAAATGAACCAGTATTCTTAAATTGATTTCAAGTTTGAACAAGGTACTGGGCTGCTGGGGGATCCCAAGTGAGCAGAGTCTGTTTTCTACCCTCGAGGAGCTCAGAGAAAAGGAAATAGATAATTACTGTGTGATGAGACTCCAGACAGAGGGGTTGGCATCTGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGATTACCACCAGGCCTTGCACACCTGCCTCCCCTCCAAGCCCCTCCTGGGCCTGGGCTCCTCTGTGATCTACGTCCTGTGGAACCTGCTGCTACTGTGGCCCCGAGTCCTAGCTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTGGTACTGCTGCTCTGGGTTTGGCTTCAAGGCACAGACTTCATGCTGGACCCCAGTTCCGAGTATCCTCTATTTCTCCTGGTTCAACGTGGCTGAGGGCCACACCCGAGGCCGGGCCACCATCCACTTGGCTTTCCTCCTGAGTGACAGCATTCTCCTGGTGGCCACCTGGGTGACTTACAGCTCCTGGCTGCCCAGCAGGATTCCACTGCAGCTGTGGCTGCCTGTAGGAGGCGGATGCTTCTTTCTGGGCCTGGCTCTGTGGCTTGTGTGCTACTGCTGGCTGCACCCTAGCTGATGCTGGGAGCCCAACCCTGACCAGGTGGACAGGACCCAGAGTCTACTTTCCTCAGAGGGGTATCAGCTGCCTCAGACCCAGTTAGCACAGAACTTTTTTCCCAAGGGTAAGGCTGAGGCTGCTTCGCCAGTGAAGGGAGAGGTGAACGGCGTCCTTTGAAGCAGGATCAGACCCAGCCAGCAGAGATGGAGAGTGACTGCTGGCAGAAGGCAGGCGAGGATAAGCTAACGATGCTGCTGTGGCCTCCATGCACTCAGCAAGAGTGGGATGCCTCTGCTGGGCCGTGCACCAGGGATGGTGCTGAGTGGGGCAGAGGCCTGCCTTCAAGGAGTTCACAGTGAACAAGATGAGAAGGGCTGGGCCCTGCAGGGTCAAGAGCCCCAATTACGTACAAGACACTTTGGGAGGAAAGACGACTACCTTTTCTTTTCCCCCTGCCATTGGTATAGCTGGTGCCCCAAAACTTTCACCTCCCTCCCTGGCCACCTCTAAAATGATTGGTATAGGGGCTTCCCCACCCCTTAGCTCCCCTATCCTGGGCTAGAAGGCCACAGGGACTGTCCTCTAGAATTCTTCCTCCCCTCCCCCACACCATTCATTCAATTCGTGAAACAAATCTTCACCGAGAGCAGTTTATGTGCTAGGAACATCATTCTATCCTTGCAACCTGGAACAAGACCAGCTACCACCTTAGCTTCATCCCCTACTTGCACCAACCAGTCCCGGGTTAGATCTCAAATGCCGGAAGTCAGGGATGCCCAACTCTGGGCAGCCCCAGTCAGAACCTCTGGGATCTCAGTGAAGCTGGCCTGGCCTCTGCTCTTGCTCTCAAGGGGCTGCTTTTCAACCAAGAGCCTTGTGAGCCTGGTCTGAGCCTTGCACAGCCACTGAGTATTTTTTATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGAGAGGAAGAGAATGTGTGTCCCTGTGGGTCTCTGCAAGTGACAGATGTGTTGTTTTTAACAGTATTATTAGGTTATGATTAAAGCCTCATGAAATCCTCTAA</dnaseq>|
 
sequence = <dnaseq>GTTAGTCGGGAGGGGGCGCTGTACGCGCGCTGTACGCTTGCGCGAGGTGACGCCGGGGCAGGGCCGGAAGGAATGCAGCGGCTGCCACGGAGCTCGTAGCTGCAGCTTTGGAGGAGTAAGCGGCGTGGTAGCGAAGGTCGCCGAACCCGCCTGGCTAGCCGGCGAGTTGAGTGGCGACTCTTTTGAAACAGATGGTCACCATGTTTAGATATTAGCAGTCCCGTATGTGCATGTCTGCATTTGAAAATGGAAGAGGGAAACAACAATGAAGAGGTAATTCACTTGAACAACTTTCACTGCCATCGGGGACAAGACTTTGTAATTTTCTTCTGGAAAACCCAGATTATCCAAAGAGAGAAGACAGAATCATTATAAATCCCAGTAGCAGTCTGCTGGCCAGCCAAGATGAGACAAAGTTGCCTAAAATAAGACTTTTTTGACTATTCTAAATTGACTCCTCTTGACCAGCACTGCTTCATCCAAGCTGCTGACCTCCTCATGGCCGACTTCAAAGTGCTCAGTAGTCAGGACATCATGTGGGCCCTGCACGAGCTCAAAGGACACTATGCAATCACCCGAAAGGACTTTGAGAGTCATCAGCATATGGAAAATCTCACCAGCCAGGATGAGGTACCCAGAGATACCAGGCCTTTTCTGATGCCATTAAAAAATGGCAGGAGCTATCACCAGAAACCAGTGGAAAAAGGAAAAAGAGAAAAGAAATGAACCAGTATTCTTAAATTGATTTCAAGTTTGAACAAGGTACTGGGCTGCTGGGGGATCCCAAGTGAGCAGAGTCTGTTTTCTACCCTCGAGGAGCTCAGAGAAAAGGAAATAGATAATTACTGTGTGATGAGACTCCAGACAGAGGGGTTGGCATCTGCACATCCTTCCTGGGCATCTCGTGGGCACTGCTCGATTACCACCAGGCCTTGCACACCTGCCTCCCCTCCAAGCCCCTCCTGGGCCTGGGCTCCTCTGTGATCTACGTCCTGTGGAACCTGCTGCTACTGTGGCCCCGAGTCCTAGCTGTGGCCCTGTTCTCAGCCCTCTTCCCCAGTATGTAGCCCTGCATTTCCTGGGCCTGTGGCTGGTACTGCTGCTCTGGGTTTGGCTTCAAGGCACAGACTTCATGCTGGACCCCAGTTCCGAGTATCCTCTATTTCTCCTGGTTCAACGTGGCTGAGGGCCACACCCGAGGCCGGGCCACCATCCACTTGGCTTTCCTCCTGAGTGACAGCATTCTCCTGGTGGCCACCTGGGTGACTTACAGCTCCTGGCTGCCCAGCAGGATTCCACTGCAGCTGTGGCTGCCTGTAGGAGGCGGATGCTTCTTTCTGGGCCTGGCTCTGTGGCTTGTGTGCTACTGCTGGCTGCACCCTAGCTGATGCTGGGAGCCCAACCCTGACCAGGTGGACAGGACCCAGAGTCTACTTTCCTCAGAGGGGTATCAGCTGCCTCAGACCCAGTTAGCACAGAACTTTTTTCCCAAGGGTAAGGCTGAGGCTGCTTCGCCAGTGAAGGGAGAGGTGAACGGCGTCCTTTGAAGCAGGATCAGACCCAGCCAGCAGAGATGGAGAGTGACTGCTGGCAGAAGGCAGGCGAGGATAAGCTAACGATGCTGCTGTGGCCTCCATGCACTCAGCAAGAGTGGGATGCCTCTGCTGGGCCGTGCACCAGGGATGGTGCTGAGTGGGGCAGAGGCCTGCCTTCAAGGAGTTCACAGTGAACAAGATGAGAAGGGCTGGGCCCTGCAGGGTCAAGAGCCCCAATTACGTACAAGACACTTTGGGAGGAAAGACGACTACCTTTTCTTTTCCCCCTGCCATTGGTATAGCTGGTGCCCCAAAACTTTCACCTCCCTCCCTGGCCACCTCTAAAATGATTGGTATAGGGGCTTCCCCACCCCTTAGCTCCCCTATCCTGGGCTAGAAGGCCACAGGGACTGTCCTCTAGAATTCTTCCTCCCCTCCCCCACACCATTCATTCAATTCGTGAAACAAATCTTCACCGAGAGCAGTTTATGTGCTAGGAACATCATTCTATCCTTGCAACCTGGAACAAGACCAGCTACCACCTTAGCTTCATCCCCTACTTGCACCAACCAGTCCCGGGTTAGATCTCAAATGCCGGAAGTCAGGGATGCCCAACTCTGGGCAGCCCCAGTCAGAACCTCTGGGATCTCAGTGAAGCTGGCCTGGCCTCTGCTCTTGCTCTCAAGGGGCTGCTTTTCAACCAAGAGCCTTGTGAGCCTGGTCTGAGCCTTGCACAGCCACTGAGTATTTTTTATTCCTTAGCCAGTGTACCTCCTACCTCAGAGTCTATGTGAGAGGAAGAGAATGTGTGTCCCTGTGGGTCTCTGCAAGTGACAGATGTGTTGTTTTTAACAGTATTATTAGGTTATGATTAAAGCCTCATGAAATCCTCTAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG046839]][[Category:Transcripts]]

Latest revision as of 06:26, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT118887

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2430 nt

Genomic location

chr7+:5013616..5037800

Exon number

8

Exons

5013616..5013792,5015932..5016067,5023302..5023404,5024541..5024706,5026198..5026262,5028694..5028808,5035106..5035213,5036241..5037800

Genome context

Sequence
000001 GTTAGTCGGG AGGGGGCGCT GTACGCGCGC TGTACGCTTG CGCGAGGTGA CGCCGGGGCA GGGCCGGAAG GAATGCAGCG 000080
000081 GCTGCCACGG AGCTCGTAGC TGCAGCTTTG GAGGAGTAAG CGGCGTGGTA GCGAAGGTCG CCGAACCCGC CTGGCTAGCC 000160
000161 GGCGAGTTGA GTGGCGACTC TTTTGAAACA GATGGTCACC ATGTTTAGAT ATTAGCAGTC CCGTATGTGC ATGTCTGCAT 000240
000241 TTGAAAATGG AAGAGGGAAA CAACAATGAA GAGGTAATTC ACTTGAACAA CTTTCACTGC CATCGGGGAC AAGACTTTGT 000320
000321 AATTTTCTTC TGGAAAACCC AGATTATCCA AAGAGAGAAG ACAGAATCAT TATAAATCCC AGTAGCAGTC TGCTGGCCAG 000400
000401 CCAAGATGAG ACAAAGTTGC CTAAAATAAG ACTTTTTTGA CTATTCTAAA TTGACTCCTC TTGACCAGCA CTGCTTCATC 000480
000481 CAAGCTGCTG ACCTCCTCAT GGCCGACTTC AAAGTGCTCA GTAGTCAGGA CATCATGTGG GCCCTGCACG AGCTCAAAGG 000560
000561 ACACTATGCA ATCACCCGAA AGGACTTTGA GAGTCATCAG CATATGGAAA ATCTCACCAG CCAGGATGAG GTACCCAGAG 000640
000641 ATACCAGGCC TTTTCTGATG CCATTAAAAA ATGGCAGGAG CTATCACCAG AAACCAGTGG AAAAAGGAAA AAGAGAAAAG 000720
000721 AAATGAACCA GTATTCTTAA ATTGATTTCA AGTTTGAACA AGGTACTGGG CTGCTGGGGG ATCCCAAGTG AGCAGAGTCT 000800
000801 GTTTTCTACC CTCGAGGAGC TCAGAGAAAA GGAAATAGAT AATTACTGTG TGATGAGACT CCAGACAGAG GGGTTGGCAT 000880
000881 CTGCACATCC TTCCTGGGCA TCTCGTGGGC ACTGCTCGAT TACCACCAGG CCTTGCACAC CTGCCTCCCC TCCAAGCCCC 000960
000961 TCCTGGGCCT GGGCTCCTCT GTGATCTACG TCCTGTGGAA CCTGCTGCTA CTGTGGCCCC GAGTCCTAGC TGTGGCCCTG 001040
001041 TTCTCAGCCC TCTTCCCCAG TATGTAGCCC TGCATTTCCT GGGCCTGTGG CTGGTACTGC TGCTCTGGGT TTGGCTTCAA 001120
001121 GGCACAGACT TCATGCTGGA CCCCAGTTCC GAGTATCCTC TATTTCTCCT GGTTCAACGT GGCTGAGGGC CACACCCGAG 001200
001201 GCCGGGCCAC CATCCACTTG GCTTTCCTCC TGAGTGACAG CATTCTCCTG GTGGCCACCT GGGTGACTTA CAGCTCCTGG 001280
001281 CTGCCCAGCA GGATTCCACT GCAGCTGTGG CTGCCTGTAG GAGGCGGATG CTTCTTTCTG GGCCTGGCTC TGTGGCTTGT 001360
001361 GTGCTACTGC TGGCTGCACC CTAGCTGATG CTGGGAGCCC AACCCTGACC AGGTGGACAG GACCCAGAGT CTACTTTCCT 001440
001441 CAGAGGGGTA TCAGCTGCCT CAGACCCAGT TAGCACAGAA CTTTTTTCCC AAGGGTAAGG CTGAGGCTGC TTCGCCAGTG 001520
001521 AAGGGAGAGG TGAACGGCGT CCTTTGAAGC AGGATCAGAC CCAGCCAGCA GAGATGGAGA GTGACTGCTG GCAGAAGGCA 001600
001601 GGCGAGGATA AGCTAACGAT GCTGCTGTGG CCTCCATGCA CTCAGCAAGA GTGGGATGCC TCTGCTGGGC CGTGCACCAG 001680
001681 GGATGGTGCT GAGTGGGGCA GAGGCCTGCC TTCAAGGAGT TCACAGTGAA CAAGATGAGA AGGGCTGGGC CCTGCAGGGT 001760
001761 CAAGAGCCCC AATTACGTAC AAGACACTTT GGGAGGAAAG ACGACTACCT TTTCTTTTCC CCCTGCCATT GGTATAGCTG 001840
001841 GTGCCCCAAA ACTTTCACCT CCCTCCCTGG CCACCTCTAA AATGATTGGT ATAGGGGCTT CCCCACCCCT TAGCTCCCCT 001920
001921 ATCCTGGGCT AGAAGGCCAC AGGGACTGTC CTCTAGAATT CTTCCTCCCC TCCCCCACAC CATTCATTCA ATTCGTGAAA 002000
002001 CAAATCTTCA CCGAGAGCAG TTTATGTGCT AGGAACATCA TTCTATCCTT GCAACCTGGA ACAAGACCAG CTACCACCTT 002080
002081 AGCTTCATCC CCTACTTGCA CCAACCAGTC CCGGGTTAGA TCTCAAATGC CGGAAGTCAG GGATGCCCAA CTCTGGGCAG 002160
002161 CCCCAGTCAG AACCTCTGGG ATCTCAGTGA AGCTGGCCTG GCCTCTGCTC TTGCTCTCAA GGGGCTGCTT TTCAACCAAG 002240
002241 AGCCTTGTGA GCCTGGTCTG AGCCTTGCAC AGCCACTGAG TATTTTTTAT TCCTTAGCCA GTGTACCTCC TACCTCAGAG 002320
002321 TCTATGTGAG AGGAAGAGAA TGTGTGTCCC TGTGGGTCTC TGCAAGTGAC AGATGTGTTG TTTTTAACAG TATTATTAGG 002400
002401 TTATGATTAA AGCCTCATGA AATCCTCTAA
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Predicted Small Protein

Name NONHSAT118887_smProtein_1655:1879
Length 75
Molecular weight 8402.4802
Aromaticity 0.121621621622
Instability index 68.327027027
Isoelectric point 6.88580322266
Runs 11
Runs residual 0.00599868160844
Runs probability 0.0485860191742
Amino acid sequence MPLLGRAPGMVLSGAEACLQGVHSEQDEKGWALQGQEPQLRTRHFGRKDDYLFFSPCHWY
SWCPKTFTSLPGHL
Secondary structure LLLLLLLLLLLLLHHHHHHHLLLLHHHHLLLLLLLLLLLLLHHHLLLLLLEEEELLLLLL
EELLLLLLLLLLLL
PRMN -
PiMo -