Difference between revisions of "NONHSAT122516"

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sequence = <dnaseq>AGGGCTCTGGTGGCGGCGGTGGCGGACACTTGGGGTCTGGACGCAACGGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGATCACCATTAACAAGGACACCAAGGTACCCAATGCCTGTTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATCGTAAGTTTCCCGTCACAGGCTCTCAGGGGCTATGTTTAATGGGCCCCTCTGGGCAAAGCACAAGTTCCAAGTCTTCCTCAGTCTCTCTGAGCTACAGGAAGTCCTTCTGGGGGCTTGCTCTGGGCATTTTATAATCTTGGTACCTTTTTATCAAAATGACACCGACCTCCATGTCTTCACATAAGCCACACTTCTGTAGTGGCTTATTCTGTAGATGAACACGTGCATTTACATTCACtgtttgtttgtttgtttgtttttgagatggaattttctctctttgttgcccaggctggagtgcaatggcacgatcttgctcactgcaacctccgcctcccgggttcaagtgattctcctgcttcagccttcctagtagctgggactacaggcccacgccacgatgcccggctaatttttgtgtttttagtagagacggggattcactgtgttggccaggctggtctcgaactcctgacctcaggtgatccacctgctggcttcccaaagtgctgggattagagacgtgagct</dnaseq>|
 
sequence = <dnaseq>AGGGCTCTGGTGGCGGCGGTGGCGGACACTTGGGGTCTGGACGCAACGGCGGCGGGAGCATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGATCACCATTAACAAGGACACCAAGGTACCCAATGCCTGTTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATCGTAAGTTTCCCGTCACAGGCTCTCAGGGGCTATGTTTAATGGGCCCCTCTGGGCAAAGCACAAGTTCCAAGTCTTCCTCAGTCTCTCTGAGCTACAGGAAGTCCTTCTGGGGGCTTGCTCTGGGCATTTTATAATCTTGGTACCTTTTTATCAAAATGACACCGACCTCCATGTCTTCACATAAGCCACACTTCTGTAGTGGCTTATTCTGTAGATGAACACGTGCATTTACATTCACtgtttgtttgtttgtttgtttttgagatggaattttctctctttgttgcccaggctggagtgcaatggcacgatcttgctcactgcaacctccgcctcccgggttcaagtgattctcctgcttcagccttcctagtagctgggactacaggcccacgccacgatgcccggctaatttttgtgtttttagtagagacggggattcactgtgttggccaggctggtctcgaactcctgacctcaggtgatccacctgctggcttcccaaagtgctgggattagagacgtgagct</dnaseq>|
 
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[[Category:Sense]]
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[[Category:Sense]][[Category:NONHSAG048428]][[Category:Transcripts]]

Latest revision as of 06:42, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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You can also add sub-section(s) at will.

Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT122516

Source

NONCODE4.0

Same with

,

Classification

sense

Length

729 nt

Genomic location

chr7-:102209752..102213027

Exon number

2

Exons

102209752..102210371,102212919..102213027

Genome context

Sequence
000001 AGGGCTCTGG TGGCGGCGGT GGCGGACACT TGGGGTCTGG ACGCAACGGC GGCGGGAGCA TGAACGCCCC TCCAGCCTTC 000080
000081 GAGTCGTTCT TGCTCTTCGA GGGCGAGAAG ATCACCATTA ACAAGGACAC CAAGGTACCC AATGCCTGTT TATTCACCAT 000160
000161 CAACAAAGAA GACCACACAC TGGGAAACAT CATTAAATCG TAAGTTTCCC GTCACAGGCT CTCAGGGGCT ATGTTTAATG 000240
000241 GGCCCCTCTG GGCAAAGCAC AAGTTCCAAG TCTTCCTCAG TCTCTCTGAG CTACAGGAAG TCCTTCTGGG GGCTTGCTCT 000320
000321 GGGCATTTTA TAATCTTGGT ACCTTTTTAT CAAAATGACA CCGACCTCCA TGTCTTCACA TAAGCCACAC TTCTGTAGTG 000400
000401 GCTTATTCTG TAGATGAACA CGTGCATTTA CATTCACtgt ttgtttgttt gtttgttttt gagatggaat tttctctctt 000480
000481 tgttgcccag gctggagtgc aatggcacga tcttgctcac tgcaacctcc gcctcccggg ttcaagtgat tctcctgctt 000560
000561 cagccttcct agtagctggg actacaggcc cacgccacga tgcccggcta atttttgtgt ttttagtaga gacggggatt 000640
000641 cactgtgttg gccaggctgg tctcgaactc ctgacctcag gtgatccacc tgctggcttc ccaaagtgct gggattagag 000720
000721 acgtgagct
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Predicted Small Protein

Name NONHSAT122516_smProtein_413:571
Length 53
Molecular weight 5940.1409
Aromaticity 0.0961538461538
Instability index 61.6769230769
Isoelectric point 8.52227783203
Runs 8
Runs residual 0.00347674923946
Runs probability 0.0325362126833
Amino acid sequence MNTCIYIHCLFVCLFLRWNFLSLLPRLECNGTILLTATSASRVQVILLLQPS
Secondary structure LLLEEEEHHHHHHHHHHHHHHHHLLLLLLLLEEEEEELLLLLLEEEEEELLL
PRMN LLLLHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHLLLLLLL
PiMo ooooTTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTooooooo