Difference between revisions of "NONHSAT124761"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
(One intermediate revision by one other user not shown) | |||
Line 42: | Line 42: | ||
sequence = <dnaseq>ATGGCGACCTTTGTGAGTGAGCTGGAGGTGGCCAAGAAGAACTTCAGTGAGGCCCTGGGGGACAACGTGAATCAATACTGGGCTAACTTAAGCTGTGGTTCAAGCGGAAGATCAGGAAAGAGGACTTTGACCTTGAAACTCATAGGTTTCTTACATAGGATAATATGCATCCTCACAATGATTTCCTCCTGGCCATTCTCACGCATTGTCAGATTTTGGTTTCTACATCAGAGGGTGCTGGATCTTTGCCCTGGATGGGGGGTTCTGCAGCAAAACCTGGAAAGCCCAATGGAAAGAAAAAGCTTTCTTCTGTCAGAAATTTGATCATAGATTTCAGCCTCACAGTCCTTTCTCAAGAGCCCAGTAATTTGTGGCAAAAGATCCCCAAGATGATGATGATTTGAAACTTTGTTCCCACACCATGATGCTTCTCATTCAAGGCTGGCTTGAAGGGAGAATGACAGTGACTGCTTATGAGCATGGGCTGGACAATGTCACCGAGGAGGCTATTTCAGCTCTTGTCTATGCTGTGGAGAATCATCCTAAAGATATACTGACATCAGTTGTGTCAAGAAGGAAAGCTTATCGGTTACGAGATGACCATTTTAAATATGCCTTTGGCAGTAATTTGACCCCACAGCCATACCTGAAGAATAATGTAGTAGCTTAGAACAACTTAATATAAAGCCCTCAAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCGGCTTCTCACCCACCTCCTGATGAAGCCGAGCAGCAGGCTGCATTCCTTCTGGCATGCTCTGGAGACACTCTATCTGCATCTTTATCTGCAGCGAACATGTATGAACTTTTTGAAGCTCTGCGGGTACACAGGGAAGTCATACCTACACATACTGTCTATGCCGTTAACATTGAAAGGATTATCATGAAAGTCTGGCATCCAAATCATGAAGAGCTGAAGACAAAGTTCACCACCAGTGCTTGGCAACCAAGGAGGGGCTTTTGCTGTGC</dnaseq>| | sequence = <dnaseq>ATGGCGACCTTTGTGAGTGAGCTGGAGGTGGCCAAGAAGAACTTCAGTGAGGCCCTGGGGGACAACGTGAATCAATACTGGGCTAACTTAAGCTGTGGTTCAAGCGGAAGATCAGGAAAGAGGACTTTGACCTTGAAACTCATAGGTTTCTTACATAGGATAATATGCATCCTCACAATGATTTCCTCCTGGCCATTCTCACGCATTGTCAGATTTTGGTTTCTACATCAGAGGGTGCTGGATCTTTGCCCTGGATGGGGGGTTCTGCAGCAAAACCTGGAAAGCCCAATGGAAAGAAAAAGCTTTCTTCTGTCAGAAATTTGATCATAGATTTCAGCCTCACAGTCCTTTCTCAAGAGCCCAGTAATTTGTGGCAAAAGATCCCCAAGATGATGATGATTTGAAACTTTGTTCCCACACCATGATGCTTCTCATTCAAGGCTGGCTTGAAGGGAGAATGACAGTGACTGCTTATGAGCATGGGCTGGACAATGTCACCGAGGAGGCTATTTCAGCTCTTGTCTATGCTGTGGAGAATCATCCTAAAGATATACTGACATCAGTTGTGTCAAGAAGGAAAGCTTATCGGTTACGAGATGACCATTTTAAATATGCCTTTGGCAGTAATTTGACCCCACAGCCATACCTGAAGAATAATGTAGTAGCTTAGAACAACTTAATATAAAGCCCTCAAGCTTTTACTGCTCCCTGTGCTGGTCAGAATCCGGCTTCTCACCCACCTCCTGATGAAGCCGAGCAGCAGGCTGCATTCCTTCTGGCATGCTCTGGAGACACTCTATCTGCATCTTTATCTGCAGCGAACATGTATGAACTTTTTGAAGCTCTGCGGGTACACAGGGAAGTCATACCTACACATACTGTCTATGCCGTTAACATTGAAAGGATTATCATGAAAGTCTGGCATCCAAATCATGAAGAGCTGAAGACAAAGTTCACCACCAGTGCTTGGCAACCAAGGAGGGGCTTTTGCTGTGC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG049411]][[Category:Transcripts]] |
Latest revision as of 06:51, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT124761 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
996 nt |
Genomic location |
chr8+:5706219..5707214 |
Exon number |
1 |
Exons |
5706219..5707214 |
Genome context |
|
Sequence |
000001 ATGGCGACCT TTGTGAGTGA GCTGGAGGTG GCCAAGAAGA ACTTCAGTGA GGCCCTGGGG GACAACGTGA ATCAATACTG 000080
000081 GGCTAACTTA AGCTGTGGTT CAAGCGGAAG ATCAGGAAAG AGGACTTTGA CCTTGAAACT CATAGGTTTC TTACATAGGA 000160 000161 TAATATGCAT CCTCACAATG ATTTCCTCCT GGCCATTCTC ACGCATTGTC AGATTTTGGT TTCTACATCA GAGGGTGCTG 000240 000241 GATCTTTGCC CTGGATGGGG GGTTCTGCAG CAAAACCTGG AAAGCCCAAT GGAAAGAAAA AGCTTTCTTC TGTCAGAAAT 000320 000321 TTGATCATAG ATTTCAGCCT CACAGTCCTT TCTCAAGAGC CCAGTAATTT GTGGCAAAAG ATCCCCAAGA TGATGATGAT 000400 000401 TTGAAACTTT GTTCCCACAC CATGATGCTT CTCATTCAAG GCTGGCTTGA AGGGAGAATG ACAGTGACTG CTTATGAGCA 000480 000481 TGGGCTGGAC AATGTCACCG AGGAGGCTAT TTCAGCTCTT GTCTATGCTG TGGAGAATCA TCCTAAAGAT ATACTGACAT 000560 000561 CAGTTGTGTC AAGAAGGAAA GCTTATCGGT TACGAGATGA CCATTTTAAA TATGCCTTTG GCAGTAATTT GACCCCACAG 000640 000641 CCATACCTGA AGAATAATGT AGTAGCTTAG AACAACTTAA TATAAAGCCC TCAAGCTTTT ACTGCTCCCT GTGCTGGTCA 000720 000721 GAATCCGGCT TCTCACCCAC CTCCTGATGA AGCCGAGCAG CAGGCTGCAT TCCTTCTGGC ATGCTCTGGA GACACTCTAT 000800 000801 CTGCATCTTT ATCTGCAGCG AACATGTATG AACTTTTTGA AGCTCTGCGG GTACACAGGG AAGTCATACC TACACATACT 000880 000881 GTCTATGCCG TTAACATTGA AAGGATTATC ATGAAAGTCT GGCATCCAAA TCATGAAGAG CTGAAGACAA AGTTCACCAC 000960 000961 CAGTGCTTGG CAACCAAGGA GGGGCTTTTG CTGTGC |
Predicted Small Protein
Name | NONHSAT124761_smProtein_164:403 |
Length | 80 |
Molecular weight | 8642.1487 |
Aromaticity | 0.0506329113924 |
Instability index | 41.4379746835 |
Isoelectric point | 9.65521240234 |
Runs | 10 |
Runs residual | 0.013698630137 |
Runs probability | 0.0494612259318 |
Amino acid sequence | MHPHNDFLLAILTHCQILVSTSEGAGSLPWMGGSAAKPGKPNGKKKLSSVRNLIIDFSLT VLSQEPSNLWQKIPKMMMI |
Secondary structure | LLLLHHHHHHHHHHLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHEEEEEEEE EELLLLLHHHHHHHHHLLL |
PRMN | - |
PiMo | - |