Difference between revisions of "NONHSAT125047"

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sequence = <dnaseq>GTCCCTCCCAACCCCCGGGCTCCCAAGTTCTATCTCACTCCTCCACCTTCCCTGTCCTCTCACAGCTGAGGTTCCGGGCTGTAATGATGGCAATGCTGCCCAGCACAACCCCTGCCCCCATGATGTCAGAAAGTGCCACAGTCTCATGGAGCATATAATACTGCAGTATAAGGGCCACAACCACCTCGGAATGCAGGACAGCGCACACCAGGGCAGGGTGGGCCTTGGTGACCGCATAGCCCACACATGTGAAGGAGACCAAGGCGAGGATCCCCTCTGCCCCCACACAACTCCAACTCAGGAGGTCACTGGGCAACACGGGGGTCTGCAGCACAAAGAGGCCTGGCACACAGCCCAGCAGCCCCACCAAGCCAGATAGGAAGGCCACTGTTGGGAGGCAGGAGGGAAAGTGCAGAGAACGATAGACCAGAAGCCCCAGGGACAGCGCCAGGCCTCCCAGGAAAGCCTGCACATAGCCCAGGGTGGTGTAGACACCTGTGGTCCCCTCCTGTAGTGTCCAGAGTCCAGGTCCCAGAATGATGATTAGTCCTAGGATGCTGCCCAACAGTCCACACCACTCGTAGCCACCGAGACCCTGGCTCTCAAGGCAGAGGGTGAGGACAGCGGAGCATACGGTGGAAGAACCTTTGCGAACAGTGGCAGCGTTGCCAGCGGGCACCACCTGAACTGCACTGTAGGCACATCCAATGCTGAGGACGTTGAGCAGGGCACAGAAGCAGGCCCAGCCTCGGATGTCAGGAGGTCCCAGAAGGGGGTCGCCACGCAGTTTAAGTAGCAGGGCAATAGGGAGGTGGAAGAGGCATCGACAGATGAGCAGCTCCAGCGAGGGCAGGTTGGAACCCTGATGGACATTTCACACAACGCAGAGCTACGAGAACATCTCTTATGCTCCTTGCCATGGGATTTTAATGCCCCAAGGTTCATAACTACAGCAAAGAAAGTAAGTCAAAAATAAACTGAGCTTAAAGAAGGTGGCAGGCCAATTTTCCCAAAAAGACTGTGGACTGTGGGCTGCTGTGTAGCCTTTGCTACAAGGCTGAGGAAGCAGAAGAAAGATGAATTGGGCAATTGGTGATGAAAAGTATTTGCCATTTTCAAAGGCTTCTCAGTGTGGCCATAGATTTTGCTAGTCaatttttaaaaaattatatttttaGCTCAACACACAGCTCTAAAGCAGGGTTCAGTGTAGTGTGTTCTCTACCGAAATGGTTATATACAGATGGTATGGAAATGGTTTTAAAGATTACTCATAAACTATCCTTTTAAAGAAAAACTAGACTCGGTCATATTTGTTAAAATGAGCAATGTCACCAAACAGAAATGTAGGTGGGAAATACTGAACCACAAACATTTGGAGTTGCAGGCATAGACTAGCAGAGCATGAATAGTCATCACTGTTTCTATAATACTGAAACACTCAAATCTGTTTCTGAGGTTTAAAACACAGAGCTATATTATATTCATAAACTTCC</dnaseq>|
 
sequence = <dnaseq>GTCCCTCCCAACCCCCGGGCTCCCAAGTTCTATCTCACTCCTCCACCTTCCCTGTCCTCTCACAGCTGAGGTTCCGGGCTGTAATGATGGCAATGCTGCCCAGCACAACCCCTGCCCCCATGATGTCAGAAAGTGCCACAGTCTCATGGAGCATATAATACTGCAGTATAAGGGCCACAACCACCTCGGAATGCAGGACAGCGCACACCAGGGCAGGGTGGGCCTTGGTGACCGCATAGCCCACACATGTGAAGGAGACCAAGGCGAGGATCCCCTCTGCCCCCACACAACTCCAACTCAGGAGGTCACTGGGCAACACGGGGGTCTGCAGCACAAAGAGGCCTGGCACACAGCCCAGCAGCCCCACCAAGCCAGATAGGAAGGCCACTGTTGGGAGGCAGGAGGGAAAGTGCAGAGAACGATAGACCAGAAGCCCCAGGGACAGCGCCAGGCCTCCCAGGAAAGCCTGCACATAGCCCAGGGTGGTGTAGACACCTGTGGTCCCCTCCTGTAGTGTCCAGAGTCCAGGTCCCAGAATGATGATTAGTCCTAGGATGCTGCCCAACAGTCCACACCACTCGTAGCCACCGAGACCCTGGCTCTCAAGGCAGAGGGTGAGGACAGCGGAGCATACGGTGGAAGAACCTTTGCGAACAGTGGCAGCGTTGCCAGCGGGCACCACCTGAACTGCACTGTAGGCACATCCAATGCTGAGGACGTTGAGCAGGGCACAGAAGCAGGCCCAGCCTCGGATGTCAGGAGGTCCCAGAAGGGGGTCGCCACGCAGTTTAAGTAGCAGGGCAATAGGGAGGTGGAAGAGGCATCGACAGATGAGCAGCTCCAGCGAGGGCAGGTTGGAACCCTGATGGACATTTCACACAACGCAGAGCTACGAGAACATCTCTTATGCTCCTTGCCATGGGATTTTAATGCCCCAAGGTTCATAACTACAGCAAAGAAAGTAAGTCAAAAATAAACTGAGCTTAAAGAAGGTGGCAGGCCAATTTTCCCAAAAAGACTGTGGACTGTGGGCTGCTGTGTAGCCTTTGCTACAAGGCTGAGGAAGCAGAAGAAAGATGAATTGGGCAATTGGTGATGAAAAGTATTTGCCATTTTCAAAGGCTTCTCAGTGTGGCCATAGATTTTGCTAGTCaatttttaaaaaattatatttttaGCTCAACACACAGCTCTAAAGCAGGGTTCAGTGTAGTGTGTTCTCTACCGAAATGGTTATATACAGATGGTATGGAAATGGTTTTAAAGATTACTCATAAACTATCCTTTTAAAGAAAAACTAGACTCGGTCATATTTGTTAAAATGAGCAATGTCACCAAACAGAAATGTAGGTGGGAAATACTGAACCACAAACATTTGGAGTTGCAGGCATAGACTAGCAGAGCATGAATAGTCATCACTGTTTCTATAATACTGAAACACTCAAATCTGTTTCTGAGGTTTAAAACACAGAGCTATATTATATTCATAAACTTCC</dnaseq>|
 
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[[Category:Antisense]]
+
[[Category:Antisense]][[Category:NONHSAG049538]][[Category:Transcripts]]

Latest revision as of 06:53, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT125047

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1496 nt

Genomic location

chr8-:11181376..11189666

Exon number

2

Exons

11181376..11182006,11188802..11189666

Genome context

Sequence
000001 GTCCCTCCCA ACCCCCGGGC TCCCAAGTTC TATCTCACTC CTCCACCTTC CCTGTCCTCT CACAGCTGAG GTTCCGGGCT 000080
000081 GTAATGATGG CAATGCTGCC CAGCACAACC CCTGCCCCCA TGATGTCAGA AAGTGCCACA GTCTCATGGA GCATATAATA 000160
000161 CTGCAGTATA AGGGCCACAA CCACCTCGGA ATGCAGGACA GCGCACACCA GGGCAGGGTG GGCCTTGGTG ACCGCATAGC 000240
000241 CCACACATGT GAAGGAGACC AAGGCGAGGA TCCCCTCTGC CCCCACACAA CTCCAACTCA GGAGGTCACT GGGCAACACG 000320
000321 GGGGTCTGCA GCACAAAGAG GCCTGGCACA CAGCCCAGCA GCCCCACCAA GCCAGATAGG AAGGCCACTG TTGGGAGGCA 000400
000401 GGAGGGAAAG TGCAGAGAAC GATAGACCAG AAGCCCCAGG GACAGCGCCA GGCCTCCCAG GAAAGCCTGC ACATAGCCCA 000480
000481 GGGTGGTGTA GACACCTGTG GTCCCCTCCT GTAGTGTCCA GAGTCCAGGT CCCAGAATGA TGATTAGTCC TAGGATGCTG 000560
000561 CCCAACAGTC CACACCACTC GTAGCCACCG AGACCCTGGC TCTCAAGGCA GAGGGTGAGG ACAGCGGAGC ATACGGTGGA 000640
000641 AGAACCTTTG CGAACAGTGG CAGCGTTGCC AGCGGGCACC ACCTGAACTG CACTGTAGGC ACATCCAATG CTGAGGACGT 000720
000721 TGAGCAGGGC ACAGAAGCAG GCCCAGCCTC GGATGTCAGG AGGTCCCAGA AGGGGGTCGC CACGCAGTTT AAGTAGCAGG 000800
000801 GCAATAGGGA GGTGGAAGAG GCATCGACAG ATGAGCAGCT CCAGCGAGGG CAGGTTGGAA CCCTGATGGA CATTTCACAC 000880
000881 AACGCAGAGC TACGAGAACA TCTCTTATGC TCCTTGCCAT GGGATTTTAA TGCCCCAAGG TTCATAACTA CAGCAAAGAA 000960
000961 AGTAAGTCAA AAATAAACTG AGCTTAAAGA AGGTGGCAGG CCAATTTTCC CAAAAAGACT GTGGACTGTG GGCTGCTGTG 001040
001041 TAGCCTTTGC TACAAGGCTG AGGAAGCAGA AGAAAGATGA ATTGGGCAAT TGGTGATGAA AAGTATTTGC CATTTTCAAA 001120
001121 GGCTTCTCAG TGTGGCCATA GATTTTGCTA GTCaattttt aaaaaattat atttttaGCT CAACACACAG CTCTAAAGCA 001200
001201 GGGTTCAGTG TAGTGTGTTC TCTACCGAAA TGGTTATATA CAGATGGTAT GGAAATGGTT TTAAAGATTA CTCATAAACT 001280
001281 ATCCTTTTAA AGAAAAACTA GACTCGGTCA TATTTGTTAA AATGAGCAAT GTCACCAAAC AGAAATGTAG GTGGGAAATA 001360
001361 CTGAACCACA AACATTTGGA GTTGCAGGCA TAGACTAGCA GAGCATGAAT AGTCATCACT GTTTCTATAA TACTGAAACA 001440
001441 CTCAAATCTG TTTCTGAGGT TTAAAACACA GAGCTATATT ATATTCATAA ACTTCC
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Predicted Small Protein

Name NONHSAT125047_smProtein_707:865
Length 53
Molecular weight 5904.7005
Aromaticity 0.0192307692308
Instability index 117.290384615
Isoelectric point 12.4274291992
Runs 8
Runs residual 0.00347674923946
Runs probability 0.0309243066596
Amino acid sequence MLRTLSRAQKQAQPRMSGGPRRGSPRSLSSRAIGRWKRHRQMSSSSEGRLEP
Secondary structure LLLHHHHHHHHLLLLLLLLLLLLLLLLLLHHHHHHEEELEELLLLLLLLLLL
PRMN -
PiMo -