Difference between revisions of "NONHSAT125873"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
 
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sequence = <dnaseq>GGAACACAAGGACCCGAATTTTCTCTTCCCCTCAGATCGTCCATAGGAGTACAGTCATCTCACCAAGAGCCGATTGGCACTGAGGGCATAAGCAGGTCCTTGAACACCAAAGTGGATCCGTCACAAGTCCTTGAGCTAACTGCCTTTTCCCCTTATTTACGGTAAGAAAGAGCCCCTCACTCCTGGCCTTGGTTTTTTGTGTTGACCTTTAAAAGCTTCTTGACATCTTTATATTTCTAATGGAAAATAACAAAACAAAAACCCAAACCAACCAGGTAATCATGACATTGAAATTTTCAACATAAGCCGAGCGGATCAATAGGAAAGACTGTGTTTGGCAGCTGAATTTAGGTCAGTGTGGTTTTACAAAAATGGCTTCTGTACAAGGGGAGAGGTTGAGCTGTCATGAACTCTGGAGATGTGTCAACTGACAACACCAGACTGACTTTGGCTTTGACGAAGTCTGAATAGAATTGGTTCCAAATGCCCACTGCCTCCGTCTCCTGTGGGGTGTGGCAGGACGTCTCACAGTGAGCACACGCCATTTGGGAGCTCATGGTATGTGGTCGGTTTGGCCCAGTGCTGCCAAGAGTTGGCAACACCAGCTCAGTTCAGCCGGTGTTTTGCAAACAAACATCACTTTGGAGATACAGACATGAGCTGCCCACTGCAGCCAGGTGGGCTGGGCACAGCCAACCCCTTCAAGGGCCAGGGCTGGCCTCCCAAGCCAAGGTTTTCCCTTACCAGTGAGGCAGGCTCTGCACTTACACTGCGGGAGCAGGGATGCGGGGCTGGCTTGTGGAAGGTAGGTTAGGCATCGAGTGGCTACACATACAGGAGAGTGGAAACATAAAACTGTACAAAGTCACACTTGGCACACAGTTGATATAGTCACAGCTGGAGCTACTAGGGCTTTCTAAGGGCACACTCAGCAGTTCTTACCAATGATGTTTTCTTGCCCAGTTGTGAATAAGCCATAGGTAGAAGCTCCTGGAGGCTTCTGGTTGATTGTCTTGCAGGGCTGTCCTACTAGAACTGGGATCCTAGACCTAACACTGCAAATAACAGTTCTGTTTCTAACATCTAACACCATGCTACTAATTTACCCTGGACTCCGGCCAGGCACAGATTTCTATATATTCACAATACAATTCAGGATATTTTGATAATATTTGGAAACATGCCTCAAACATGCAACTTACTTCAGAGGAAAAAAATAGATATTTTTAATTACAAGCATTCAAAAGTCAAGAACAAAAACTGTGATCCAAACCAGTGTAAGATCGTCCATCCCAGCATACTTAAAATGTTTGGTATAAAAATACTCACTTTTCTTGGTTTTATTGTTGACTTCTCTTACGTTTCGTTTGAAAATATCTCCAAACTGTACAGAAATTTCAGACCATGCATTCACA</dnaseq>|
 
sequence = <dnaseq>GGAACACAAGGACCCGAATTTTCTCTTCCCCTCAGATCGTCCATAGGAGTACAGTCATCTCACCAAGAGCCGATTGGCACTGAGGGCATAAGCAGGTCCTTGAACACCAAAGTGGATCCGTCACAAGTCCTTGAGCTAACTGCCTTTTCCCCTTATTTACGGTAAGAAAGAGCCCCTCACTCCTGGCCTTGGTTTTTTGTGTTGACCTTTAAAAGCTTCTTGACATCTTTATATTTCTAATGGAAAATAACAAAACAAAAACCCAAACCAACCAGGTAATCATGACATTGAAATTTTCAACATAAGCCGAGCGGATCAATAGGAAAGACTGTGTTTGGCAGCTGAATTTAGGTCAGTGTGGTTTTACAAAAATGGCTTCTGTACAAGGGGAGAGGTTGAGCTGTCATGAACTCTGGAGATGTGTCAACTGACAACACCAGACTGACTTTGGCTTTGACGAAGTCTGAATAGAATTGGTTCCAAATGCCCACTGCCTCCGTCTCCTGTGGGGTGTGGCAGGACGTCTCACAGTGAGCACACGCCATTTGGGAGCTCATGGTATGTGGTCGGTTTGGCCCAGTGCTGCCAAGAGTTGGCAACACCAGCTCAGTTCAGCCGGTGTTTTGCAAACAAACATCACTTTGGAGATACAGACATGAGCTGCCCACTGCAGCCAGGTGGGCTGGGCACAGCCAACCCCTTCAAGGGCCAGGGCTGGCCTCCCAAGCCAAGGTTTTCCCTTACCAGTGAGGCAGGCTCTGCACTTACACTGCGGGAGCAGGGATGCGGGGCTGGCTTGTGGAAGGTAGGTTAGGCATCGAGTGGCTACACATACAGGAGAGTGGAAACATAAAACTGTACAAAGTCACACTTGGCACACAGTTGATATAGTCACAGCTGGAGCTACTAGGGCTTTCTAAGGGCACACTCAGCAGTTCTTACCAATGATGTTTTCTTGCCCAGTTGTGAATAAGCCATAGGTAGAAGCTCCTGGAGGCTTCTGGTTGATTGTCTTGCAGGGCTGTCCTACTAGAACTGGGATCCTAGACCTAACACTGCAAATAACAGTTCTGTTTCTAACATCTAACACCATGCTACTAATTTACCCTGGACTCCGGCCAGGCACAGATTTCTATATATTCACAATACAATTCAGGATATTTTGATAATATTTGGAAACATGCCTCAAACATGCAACTTACTTCAGAGGAAAAAAATAGATATTTTTAATTACAAGCATTCAAAAGTCAAGAACAAAAACTGTGATCCAAACCAGTGTAAGATCGTCCATCCCAGCATACTTAAAATGTTTGGTATAAAAATACTCACTTTTCTTGGTTTTATTGTTGACTTCTCTTACGTTTCGTTTGAAAATATCTCCAAACTGTACAGAAATTTCAGACCATGCATTCACA</dnaseq>|
 
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[[Category:Antisense]]
+
[[Category:Antisense]][[Category:NONHSAG049906]][[Category:Transcripts]]

Latest revision as of 06:56, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT125873

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1415 nt

Genomic location

chr8-:30428301..30432397

Exon number

2

Exons

30428301..30429669,30432352..30432397

Genome context

Sequence
000001 GGAACACAAG GACCCGAATT TTCTCTTCCC CTCAGATCGT CCATAGGAGT ACAGTCATCT CACCAAGAGC CGATTGGCAC 000080
000081 TGAGGGCATA AGCAGGTCCT TGAACACCAA AGTGGATCCG TCACAAGTCC TTGAGCTAAC TGCCTTTTCC CCTTATTTAC 000160
000161 GGTAAGAAAG AGCCCCTCAC TCCTGGCCTT GGTTTTTTGT GTTGACCTTT AAAAGCTTCT TGACATCTTT ATATTTCTAA 000240
000241 TGGAAAATAA CAAAACAAAA ACCCAAACCA ACCAGGTAAT CATGACATTG AAATTTTCAA CATAAGCCGA GCGGATCAAT 000320
000321 AGGAAAGACT GTGTTTGGCA GCTGAATTTA GGTCAGTGTG GTTTTACAAA AATGGCTTCT GTACAAGGGG AGAGGTTGAG 000400
000401 CTGTCATGAA CTCTGGAGAT GTGTCAACTG ACAACACCAG ACTGACTTTG GCTTTGACGA AGTCTGAATA GAATTGGTTC 000480
000481 CAAATGCCCA CTGCCTCCGT CTCCTGTGGG GTGTGGCAGG ACGTCTCACA GTGAGCACAC GCCATTTGGG AGCTCATGGT 000560
000561 ATGTGGTCGG TTTGGCCCAG TGCTGCCAAG AGTTGGCAAC ACCAGCTCAG TTCAGCCGGT GTTTTGCAAA CAAACATCAC 000640
000641 TTTGGAGATA CAGACATGAG CTGCCCACTG CAGCCAGGTG GGCTGGGCAC AGCCAACCCC TTCAAGGGCC AGGGCTGGCC 000720
000721 TCCCAAGCCA AGGTTTTCCC TTACCAGTGA GGCAGGCTCT GCACTTACAC TGCGGGAGCA GGGATGCGGG GCTGGCTTGT 000800
000801 GGAAGGTAGG TTAGGCATCG AGTGGCTACA CATACAGGAG AGTGGAAACA TAAAACTGTA CAAAGTCACA CTTGGCACAC 000880
000881 AGTTGATATA GTCACAGCTG GAGCTACTAG GGCTTTCTAA GGGCACACTC AGCAGTTCTT ACCAATGATG TTTTCTTGCC 000960
000961 CAGTTGTGAA TAAGCCATAG GTAGAAGCTC CTGGAGGCTT CTGGTTGATT GTCTTGCAGG GCTGTCCTAC TAGAACTGGG 001040
001041 ATCCTAGACC TAACACTGCA AATAACAGTT CTGTTTCTAA CATCTAACAC CATGCTACTA ATTTACCCTG GACTCCGGCC 001120
001121 AGGCACAGAT TTCTATATAT TCACAATACA ATTCAGGATA TTTTGATAAT ATTTGGAAAC ATGCCTCAAA CATGCAACTT 001200
001201 ACTTCAGAGG AAAAAAATAG ATATTTTTAA TTACAAGCAT TCAAAAGTCA AGAACAAAAA CTGTGATCCA AACCAGTGTA 001280
001281 AGATCGTCCA TCCCAGCATA CTTAAAATGT TTGGTATAAA AATACTCACT TTTCTTGGTT TTATTGTTGA CTTCTCTTAC 001360
001361 GTTTCGTTTG AAAATATCTC CAAACTGTAC AGAAATTTCA GACCATGCAT TCACA
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Predicted Small Protein

Name NONHSAT125873_smProtein_560:658
Length 33
Molecular weight 3599.0344
Aromaticity 0.09375
Instability index 46.965625
Isoelectric point 6.50152587891
Runs 7
Runs residual 0.0271045918367
Runs probability 0.0374870668989
Amino acid sequence MWSVWPSAAKSWQHQLSSAGVLQTNITLEIQT
Secondary structure LLLLLHHHHHHHHHHHHHLLLLEELEEEEEEL
PRMN -
PiMo -