Difference between revisions of "NONHSAT125873"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGAACACAAGGACCCGAATTTTCTCTTCCCCTCAGATCGTCCATAGGAGTACAGTCATCTCACCAAGAGCCGATTGGCACTGAGGGCATAAGCAGGTCCTTGAACACCAAAGTGGATCCGTCACAAGTCCTTGAGCTAACTGCCTTTTCCCCTTATTTACGGTAAGAAAGAGCCCCTCACTCCTGGCCTTGGTTTTTTGTGTTGACCTTTAAAAGCTTCTTGACATCTTTATATTTCTAATGGAAAATAACAAAACAAAAACCCAAACCAACCAGGTAATCATGACATTGAAATTTTCAACATAAGCCGAGCGGATCAATAGGAAAGACTGTGTTTGGCAGCTGAATTTAGGTCAGTGTGGTTTTACAAAAATGGCTTCTGTACAAGGGGAGAGGTTGAGCTGTCATGAACTCTGGAGATGTGTCAACTGACAACACCAGACTGACTTTGGCTTTGACGAAGTCTGAATAGAATTGGTTCCAAATGCCCACTGCCTCCGTCTCCTGTGGGGTGTGGCAGGACGTCTCACAGTGAGCACACGCCATTTGGGAGCTCATGGTATGTGGTCGGTTTGGCCCAGTGCTGCCAAGAGTTGGCAACACCAGCTCAGTTCAGCCGGTGTTTTGCAAACAAACATCACTTTGGAGATACAGACATGAGCTGCCCACTGCAGCCAGGTGGGCTGGGCACAGCCAACCCCTTCAAGGGCCAGGGCTGGCCTCCCAAGCCAAGGTTTTCCCTTACCAGTGAGGCAGGCTCTGCACTTACACTGCGGGAGCAGGGATGCGGGGCTGGCTTGTGGAAGGTAGGTTAGGCATCGAGTGGCTACACATACAGGAGAGTGGAAACATAAAACTGTACAAAGTCACACTTGGCACACAGTTGATATAGTCACAGCTGGAGCTACTAGGGCTTTCTAAGGGCACACTCAGCAGTTCTTACCAATGATGTTTTCTTGCCCAGTTGTGAATAAGCCATAGGTAGAAGCTCCTGGAGGCTTCTGGTTGATTGTCTTGCAGGGCTGTCCTACTAGAACTGGGATCCTAGACCTAACACTGCAAATAACAGTTCTGTTTCTAACATCTAACACCATGCTACTAATTTACCCTGGACTCCGGCCAGGCACAGATTTCTATATATTCACAATACAATTCAGGATATTTTGATAATATTTGGAAACATGCCTCAAACATGCAACTTACTTCAGAGGAAAAAAATAGATATTTTTAATTACAAGCATTCAAAAGTCAAGAACAAAAACTGTGATCCAAACCAGTGTAAGATCGTCCATCCCAGCATACTTAAAATGTTTGGTATAAAAATACTCACTTTTCTTGGTTTTATTGTTGACTTCTCTTACGTTTCGTTTGAAAATATCTCCAAACTGTACAGAAATTTCAGACCATGCATTCACA</dnaseq>| | sequence = <dnaseq>GGAACACAAGGACCCGAATTTTCTCTTCCCCTCAGATCGTCCATAGGAGTACAGTCATCTCACCAAGAGCCGATTGGCACTGAGGGCATAAGCAGGTCCTTGAACACCAAAGTGGATCCGTCACAAGTCCTTGAGCTAACTGCCTTTTCCCCTTATTTACGGTAAGAAAGAGCCCCTCACTCCTGGCCTTGGTTTTTTGTGTTGACCTTTAAAAGCTTCTTGACATCTTTATATTTCTAATGGAAAATAACAAAACAAAAACCCAAACCAACCAGGTAATCATGACATTGAAATTTTCAACATAAGCCGAGCGGATCAATAGGAAAGACTGTGTTTGGCAGCTGAATTTAGGTCAGTGTGGTTTTACAAAAATGGCTTCTGTACAAGGGGAGAGGTTGAGCTGTCATGAACTCTGGAGATGTGTCAACTGACAACACCAGACTGACTTTGGCTTTGACGAAGTCTGAATAGAATTGGTTCCAAATGCCCACTGCCTCCGTCTCCTGTGGGGTGTGGCAGGACGTCTCACAGTGAGCACACGCCATTTGGGAGCTCATGGTATGTGGTCGGTTTGGCCCAGTGCTGCCAAGAGTTGGCAACACCAGCTCAGTTCAGCCGGTGTTTTGCAAACAAACATCACTTTGGAGATACAGACATGAGCTGCCCACTGCAGCCAGGTGGGCTGGGCACAGCCAACCCCTTCAAGGGCCAGGGCTGGCCTCCCAAGCCAAGGTTTTCCCTTACCAGTGAGGCAGGCTCTGCACTTACACTGCGGGAGCAGGGATGCGGGGCTGGCTTGTGGAAGGTAGGTTAGGCATCGAGTGGCTACACATACAGGAGAGTGGAAACATAAAACTGTACAAAGTCACACTTGGCACACAGTTGATATAGTCACAGCTGGAGCTACTAGGGCTTTCTAAGGGCACACTCAGCAGTTCTTACCAATGATGTTTTCTTGCCCAGTTGTGAATAAGCCATAGGTAGAAGCTCCTGGAGGCTTCTGGTTGATTGTCTTGCAGGGCTGTCCTACTAGAACTGGGATCCTAGACCTAACACTGCAAATAACAGTTCTGTTTCTAACATCTAACACCATGCTACTAATTTACCCTGGACTCCGGCCAGGCACAGATTTCTATATATTCACAATACAATTCAGGATATTTTGATAATATTTGGAAACATGCCTCAAACATGCAACTTACTTCAGAGGAAAAAAATAGATATTTTTAATTACAAGCATTCAAAAGTCAAGAACAAAAACTGTGATCCAAACCAGTGTAAGATCGTCCATCCCAGCATACTTAAAATGTTTGGTATAAAAATACTCACTTTTCTTGGTTTTATTGTTGACTTCTCTTACGTTTCGTTTGAAAATATCTCCAAACTGTACAGAAATTTCAGACCATGCATTCACA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG049906]][[Category:Transcripts]] |
Latest revision as of 06:56, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125873 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1415 nt |
Genomic location |
chr8-:30428301..30432397 |
Exon number |
2 |
Exons |
30428301..30429669,30432352..30432397 |
Genome context |
|
Sequence |
000001 GGAACACAAG GACCCGAATT TTCTCTTCCC CTCAGATCGT CCATAGGAGT ACAGTCATCT CACCAAGAGC CGATTGGCAC 000080
000081 TGAGGGCATA AGCAGGTCCT TGAACACCAA AGTGGATCCG TCACAAGTCC TTGAGCTAAC TGCCTTTTCC CCTTATTTAC 000160 000161 GGTAAGAAAG AGCCCCTCAC TCCTGGCCTT GGTTTTTTGT GTTGACCTTT AAAAGCTTCT TGACATCTTT ATATTTCTAA 000240 000241 TGGAAAATAA CAAAACAAAA ACCCAAACCA ACCAGGTAAT CATGACATTG AAATTTTCAA CATAAGCCGA GCGGATCAAT 000320 000321 AGGAAAGACT GTGTTTGGCA GCTGAATTTA GGTCAGTGTG GTTTTACAAA AATGGCTTCT GTACAAGGGG AGAGGTTGAG 000400 000401 CTGTCATGAA CTCTGGAGAT GTGTCAACTG ACAACACCAG ACTGACTTTG GCTTTGACGA AGTCTGAATA GAATTGGTTC 000480 000481 CAAATGCCCA CTGCCTCCGT CTCCTGTGGG GTGTGGCAGG ACGTCTCACA GTGAGCACAC GCCATTTGGG AGCTCATGGT 000560 000561 ATGTGGTCGG TTTGGCCCAG TGCTGCCAAG AGTTGGCAAC ACCAGCTCAG TTCAGCCGGT GTTTTGCAAA CAAACATCAC 000640 000641 TTTGGAGATA CAGACATGAG CTGCCCACTG CAGCCAGGTG GGCTGGGCAC AGCCAACCCC TTCAAGGGCC AGGGCTGGCC 000720 000721 TCCCAAGCCA AGGTTTTCCC TTACCAGTGA GGCAGGCTCT GCACTTACAC TGCGGGAGCA GGGATGCGGG GCTGGCTTGT 000800 000801 GGAAGGTAGG TTAGGCATCG AGTGGCTACA CATACAGGAG AGTGGAAACA TAAAACTGTA CAAAGTCACA CTTGGCACAC 000880 000881 AGTTGATATA GTCACAGCTG GAGCTACTAG GGCTTTCTAA GGGCACACTC AGCAGTTCTT ACCAATGATG TTTTCTTGCC 000960 000961 CAGTTGTGAA TAAGCCATAG GTAGAAGCTC CTGGAGGCTT CTGGTTGATT GTCTTGCAGG GCTGTCCTAC TAGAACTGGG 001040 001041 ATCCTAGACC TAACACTGCA AATAACAGTT CTGTTTCTAA CATCTAACAC CATGCTACTA ATTTACCCTG GACTCCGGCC 001120 001121 AGGCACAGAT TTCTATATAT TCACAATACA ATTCAGGATA TTTTGATAAT ATTTGGAAAC ATGCCTCAAA CATGCAACTT 001200 001201 ACTTCAGAGG AAAAAAATAG ATATTTTTAA TTACAAGCAT TCAAAAGTCA AGAACAAAAA CTGTGATCCA AACCAGTGTA 001280 001281 AGATCGTCCA TCCCAGCATA CTTAAAATGT TTGGTATAAA AATACTCACT TTTCTTGGTT TTATTGTTGA CTTCTCTTAC 001360 001361 GTTTCGTTTG AAAATATCTC CAAACTGTAC AGAAATTTCA GACCATGCAT TCACA |
Predicted Small Protein
Name | NONHSAT125873_smProtein_560:658 |
Length | 33 |
Molecular weight | 3599.0344 |
Aromaticity | 0.09375 |
Instability index | 46.965625 |
Isoelectric point | 6.50152587891 |
Runs | 7 |
Runs residual | 0.0271045918367 |
Runs probability | 0.0374870668989 |
Amino acid sequence | MWSVWPSAAKSWQHQLSSAGVLQTNITLEIQT |
Secondary structure | LLLLLHHHHHHHHHHHHHLLLLEELEEEEEEL |
PRMN | - |
PiMo | - |