Difference between revisions of "NONHSAT127191"

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sequence = <dnaseq>gtcccaactcttcaggaactcactgttcattggcaaaagaagcaagtgaatagagaaGATATCATAGTTTCTATGATATGAGCTTGTTCCGATATAACAAAGCCATGGAGGAGGAATTCCAGCAAAAGCTTTATAAAAGTTTGTGCCATGAACTGACAGTGAGGTCATTAAAATGGAGTTTGCAATTTAACTCACTAGTTTTTGGCAAATAAAATATCCTTCATACTTTATTAACTAATAATATCATCCCAAATTGCCTTTTATTATGAATAATAACTTTGAATTGTTTTCTATTAACAGGACATCTGTGCCCTAAGTGGAATGGTAGAGACCATTAAAAAATTGTCTTGAAAACATACAGCTGATATTTTAGCACCGTGCATTGTAAGTACGGGTCAATCTTGGGGTCAACAGGAATTTATTTTTAGAATGTAAAAATCACCCTTATTATAAAGGGGTCTTAGAAAACATCCAGCCCTAGGGCCTGTAGCATGGCTCCCAAGGATACGATTGAAATAAGATTCTGGTTTAGTCGTTTTAAGAAACAATATTTTATTCAGGGAAACTTGATGGTCATGTTCTTTATTTTTATTTTTTTCATAAAAATGCCAGCTGGACATGTTCACTGAAGCTCTGGGTAAAGAAGTTGGAAGGAAAGCCATGAATTGAGAGAAAGTGGGAGCTACAGTGAAGAGAGAGAGCATGACCTAAGTAGGAAGGGAAGGGAGAGAGGAAAAAGAAAGAAACCACGGAAGGATGGAAAGGGAGAAACCTCATCTGGGCCAATTGGGGTCTGGCTTCTTCAGGGGAGCTACTTAACCATAGAGCACGTGACGAAAAACGATTGAAAGATCAGGTTCAATCACATGGGCTGAAGTCCATCTCACCTCCAGTTCTGTCTTGCTCTGCTTTTGAGGATTGTTAATGGTCAGCCTGATGAAGGGCAGCGGGTAGAACCAGAGCGCTGAATGCTTCTGAGCTGCATGCTGGCTCCTGAGCATTGACAACATTCTCCTGCCCATGCAGCATCAGCCCCAGAAAGAGCTGAGAGAGCTGCCCTGAGGATTCATTCTGTGTGTGTTGGAGGAGTGGGGGTGGGGGTGGAGGTGATTACAGGGAACAACAGAGAAAAAGAGAAGTATAGTTTATAATTTCCCCTTACATTGAATGGCTTTGTAGCTGCTGAATTGTGCTACCTGTTTTCATACTGAGATTTATCTAAATGTATTTTAATGGCATAGGTACTAGTAAAAAATTTTAGTCAAATAATGTGTCTACATAAAAAGTCTGTAAAAAGCCTTGCCTTGCAAAATAAACTGTTAATTGCATTTAAAGATAATAAGGGTTAAAAAAATAAGGGGCATGTTTACAGGGATAAATGTTCATTGTGAACAAGAAAATGTGGTTTCAACTAAAGTAAGGTAATTAACAACAACACAAAAACGCCAAAGGATTTGGAGAACCGAAACAAAAACAAAACGCCTCAGAAGGGTGATGCACCTTCCGACTCTCCCTTCCTCGTGCTCAGCCCCCACGTCAATCACCTCCTCTCAGCGGTCACTAACCTGGCTATTTGTCTGTTTCCACACTACTGCATCACAAAACATCATGCCCACTTGCCTGGAAAAGATAATATCTCACACATATGGGGCCTGCCTTTGATCTCTGTGGTCGAGCTGGAGGTCAGAGGCCTGCCTTCTTCAGGCCCTTACTTCAAATGATTCCTTTCATTTACTGAGAAACCAAACGTTAGAAGGGCAAAGGCAGAAAAAATAAAGCCGTGATTTAATAGCAATTTATGTGTTTGGCCTATTTCGGGTTGGGTTTTATTCTC</dnaseq>|
 
sequence = <dnaseq>gtcccaactcttcaggaactcactgttcattggcaaaagaagcaagtgaatagagaaGATATCATAGTTTCTATGATATGAGCTTGTTCCGATATAACAAAGCCATGGAGGAGGAATTCCAGCAAAAGCTTTATAAAAGTTTGTGCCATGAACTGACAGTGAGGTCATTAAAATGGAGTTTGCAATTTAACTCACTAGTTTTTGGCAAATAAAATATCCTTCATACTTTATTAACTAATAATATCATCCCAAATTGCCTTTTATTATGAATAATAACTTTGAATTGTTTTCTATTAACAGGACATCTGTGCCCTAAGTGGAATGGTAGAGACCATTAAAAAATTGTCTTGAAAACATACAGCTGATATTTTAGCACCGTGCATTGTAAGTACGGGTCAATCTTGGGGTCAACAGGAATTTATTTTTAGAATGTAAAAATCACCCTTATTATAAAGGGGTCTTAGAAAACATCCAGCCCTAGGGCCTGTAGCATGGCTCCCAAGGATACGATTGAAATAAGATTCTGGTTTAGTCGTTTTAAGAAACAATATTTTATTCAGGGAAACTTGATGGTCATGTTCTTTATTTTTATTTTTTTCATAAAAATGCCAGCTGGACATGTTCACTGAAGCTCTGGGTAAAGAAGTTGGAAGGAAAGCCATGAATTGAGAGAAAGTGGGAGCTACAGTGAAGAGAGAGAGCATGACCTAAGTAGGAAGGGAAGGGAGAGAGGAAAAAGAAAGAAACCACGGAAGGATGGAAAGGGAGAAACCTCATCTGGGCCAATTGGGGTCTGGCTTCTTCAGGGGAGCTACTTAACCATAGAGCACGTGACGAAAAACGATTGAAAGATCAGGTTCAATCACATGGGCTGAAGTCCATCTCACCTCCAGTTCTGTCTTGCTCTGCTTTTGAGGATTGTTAATGGTCAGCCTGATGAAGGGCAGCGGGTAGAACCAGAGCGCTGAATGCTTCTGAGCTGCATGCTGGCTCCTGAGCATTGACAACATTCTCCTGCCCATGCAGCATCAGCCCCAGAAAGAGCTGAGAGAGCTGCCCTGAGGATTCATTCTGTGTGTGTTGGAGGAGTGGGGGTGGGGGTGGAGGTGATTACAGGGAACAACAGAGAAAAAGAGAAGTATAGTTTATAATTTCCCCTTACATTGAATGGCTTTGTAGCTGCTGAATTGTGCTACCTGTTTTCATACTGAGATTTATCTAAATGTATTTTAATGGCATAGGTACTAGTAAAAAATTTTAGTCAAATAATGTGTCTACATAAAAAGTCTGTAAAAAGCCTTGCCTTGCAAAATAAACTGTTAATTGCATTTAAAGATAATAAGGGTTAAAAAAATAAGGGGCATGTTTACAGGGATAAATGTTCATTGTGAACAAGAAAATGTGGTTTCAACTAAAGTAAGGTAATTAACAACAACACAAAAACGCCAAAGGATTTGGAGAACCGAAACAAAAACAAAACGCCTCAGAAGGGTGATGCACCTTCCGACTCTCCCTTCCTCGTGCTCAGCCCCCACGTCAATCACCTCCTCTCAGCGGTCACTAACCTGGCTATTTGTCTGTTTCCACACTACTGCATCACAAAACATCATGCCCACTTGCCTGGAAAAGATAATATCTCACACATATGGGGCCTGCCTTTGATCTCTGTGGTCGAGCTGGAGGTCAGAGGCCTGCCTTCTTCAGGCCCTTACTTCAAATGATTCCTTTCATTTACTGAGAAACCAAACGTTAGAAGGGCAAAGGCAGAAAAAATAAAGCCGTGATTTAATAGCAATTTATGTGTTTGGCCTATTTCGGGTTGGGTTTTATTCTC</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG050490]][[Category:Transcripts]]

Latest revision as of 07:01, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT127191

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1834 nt

Genomic location

chr8+:72665590..72668941

Exon number

2

Exons

72665590..72666150,72667669..72668941

Genome context

Sequence
000001 gtcccaactc ttcaggaact cactgttcat tggcaaaaga agcaagtgaa tagagaaGAT ATCATAGTTT CTATGATATG 000080
000081 AGCTTGTTCC GATATAACAA AGCCATGGAG GAGGAATTCC AGCAAAAGCT TTATAAAAGT TTGTGCCATG AACTGACAGT 000160
000161 GAGGTCATTA AAATGGAGTT TGCAATTTAA CTCACTAGTT TTTGGCAAAT AAAATATCCT TCATACTTTA TTAACTAATA 000240
000241 ATATCATCCC AAATTGCCTT TTATTATGAA TAATAACTTT GAATTGTTTT CTATTAACAG GACATCTGTG CCCTAAGTGG 000320
000321 AATGGTAGAG ACCATTAAAA AATTGTCTTG AAAACATACA GCTGATATTT TAGCACCGTG CATTGTAAGT ACGGGTCAAT 000400
000401 CTTGGGGTCA ACAGGAATTT ATTTTTAGAA TGTAAAAATC ACCCTTATTA TAAAGGGGTC TTAGAAAACA TCCAGCCCTA 000480
000481 GGGCCTGTAG CATGGCTCCC AAGGATACGA TTGAAATAAG ATTCTGGTTT AGTCGTTTTA AGAAACAATA TTTTATTCAG 000560
000561 GGAAACTTGA TGGTCATGTT CTTTATTTTT ATTTTTTTCA TAAAAATGCC AGCTGGACAT GTTCACTGAA GCTCTGGGTA 000640
000641 AAGAAGTTGG AAGGAAAGCC ATGAATTGAG AGAAAGTGGG AGCTACAGTG AAGAGAGAGA GCATGACCTA AGTAGGAAGG 000720
000721 GAAGGGAGAG AGGAAAAAGA AAGAAACCAC GGAAGGATGG AAAGGGAGAA ACCTCATCTG GGCCAATTGG GGTCTGGCTT 000800
000801 CTTCAGGGGA GCTACTTAAC CATAGAGCAC GTGACGAAAA ACGATTGAAA GATCAGGTTC AATCACATGG GCTGAAGTCC 000880
000881 ATCTCACCTC CAGTTCTGTC TTGCTCTGCT TTTGAGGATT GTTAATGGTC AGCCTGATGA AGGGCAGCGG GTAGAACCAG 000960
000961 AGCGCTGAAT GCTTCTGAGC TGCATGCTGG CTCCTGAGCA TTGACAACAT TCTCCTGCCC ATGCAGCATC AGCCCCAGAA 001040
001041 AGAGCTGAGA GAGCTGCCCT GAGGATTCAT TCTGTGTGTG TTGGAGGAGT GGGGGTGGGG GTGGAGGTGA TTACAGGGAA 001120
001121 CAACAGAGAA AAAGAGAAGT ATAGTTTATA ATTTCCCCTT ACATTGAATG GCTTTGTAGC TGCTGAATTG TGCTACCTGT 001200
001201 TTTCATACTG AGATTTATCT AAATGTATTT TAATGGCATA GGTACTAGTA AAAAATTTTA GTCAAATAAT GTGTCTACAT 001280
001281 AAAAAGTCTG TAAAAAGCCT TGCCTTGCAA AATAAACTGT TAATTGCATT TAAAGATAAT AAGGGTTAAA AAAATAAGGG 001360
001361 GCATGTTTAC AGGGATAAAT GTTCATTGTG AACAAGAAAA TGTGGTTTCA ACTAAAGTAA GGTAATTAAC AACAACACAA 001440
001441 AAACGCCAAA GGATTTGGAG AACCGAAACA AAAACAAAAC GCCTCAGAAG GGTGATGCAC CTTCCGACTC TCCCTTCCTC 001520
001521 GTGCTCAGCC CCCACGTCAA TCACCTCCTC TCAGCGGTCA CTAACCTGGC TATTTGTCTG TTTCCACACT ACTGCATCAC 001600
001601 AAAACATCAT GCCCACTTGC CTGGAAAAGA TAATATCTCA CACATATGGG GCCTGCCTTT GATCTCTGTG GTCGAGCTGG 001680
001681 AGGTCAGAGG CCTGCCTTCT TCAGGCCCTT ACTTCAAATG ATTCCTTTCA TTTACTGAGA AACCAAACGT TAGAAGGGCA 001760
001761 AAGGCAGAAA AAATAAAGCC GTGATTTAAT AGCAATTTAT GTGTTTGGCC TATTTCGGGT TGGGTTTTAT TCTC
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Predicted Small Protein

Name NONHSAT127191_smProtein_491:628
Length 46
Molecular weight 5559.6834
Aromaticity 0.244444444444
Instability index 49.5377777778
Isoelectric point 10.1659545898
Runs 7
Runs residual 0.00669191919192
Runs probability 0.0539909657557
Amino acid sequence MAPKDTIEIRFWFSRFKKQYFIQGNLMVMFFIFIFFIKMPAGHVH
Secondary structure LLLLLLEEEHHHHHHHHHHHHHHLLHHHHHHHHHHHEELLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooo